prot_H-paniculata_contig2257.6010.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2257.6010.1
Unique Nameprot_H-paniculata_contig2257.6010.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length361
Homology
BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: D8LB47_ECTSI (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB47_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 4.980e-47
Identity = 100/173 (57.80%), Postives = 125/173 (72.25%), Query Frame = 0
Query:    1 MPLRERRRLTARQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRS-CRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHGVWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLRVPAEIALVEAAGCLFYSNRPSHVAP 172
            MPLRERRRL+A+QVA+FDVVVTTYD+LKAKEVPR VE  A    SPRS     + +WR+R     GQ +T   +A++K  + VSLLHGVWW RVVADGA+IL   RSARA AA  L+G ARWC+VD E++  +E++S+RM  L  FLRVPA + LVE A  L + +RP H+AP
Sbjct: 1199 MPLRERRRLSAKQVAAFDVVVTTYDVLKAKEVPRGVE--AKEATSPRSWALPGSTQWRTRNAKEGGQKRT---SASSKTDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALALMGTARWCLVDCESMSIVEDASERMRCLAAFLRVPAAVPLVEVAESLLFRSRPRHIAP 1366          
BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: A0A6H5KIY1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY1_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 1.030e-43
Identity = 101/187 (54.01%), Postives = 124/187 (66.31%), Query Frame = 0
Query:    1 MPLRERRRLTARQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRS-CRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHGVWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRM--W------------SLVRFLRVPAEIALVEAAGCLFYSNRPSHVAP 172
            MPLRERRRL+A+QVA+FDVVVTTYD+LKAKEVPR VE  A    SPRS     + +WR+R     GQ ++   A+ T   + VSLLHGVWW RVVADGA+IL   RSARA AA  L G ARWC+VD E++  +E++SDRM  W             L  FLRVPA + LV+ A  LF+ +RP H+AP
Sbjct: 1197 MPLRERRRLSAKQVAAFDVVVTTYDVLKAKEVPRGVE--AKEATSPRSWALPGSTQWRTRNGKEAGQKRSSSSASMT--DHMVSLLHGVWWDRVVADGAQILATQRSARAVAALTLAGTARWCLVDCESMSIVEDASDRMRAWIGREKEDNFLEECLAAFLRVPAAVPLVDVAESLFFRSRPRHIAP 1379          
BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: A0A1V9ZDT9_9STRA (SNF2 family DNA/RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZDT9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.720e-5
Identity = 40/134 (29.85%), Postives = 63/134 (47.01%), Query Frame = 0
Query:   16 SFDVVVTTYDILKAKEVPRVVEPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHGVWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLRVP 149
            +FDV+++TYD+L+ KE    V               +AG  R        + + EKQ         +S LH + W RV+ D A ++ N  SAR +A+  L+  ARWC+        I+N  + +  L +FL +P
Sbjct:  477 AFDVILSTYDVLRMKETAVPVA--------------SAGRSRDTSWIAAKRQREEKQL--------LSRLHKIHWERVILDEAHLIANMASARTQASFQLLANARWCVTGTP----IQNRLEDLHPLFKFLGIP 584          
BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: A0A1D6PUW7_MAIZE (Putative SNF2-domain/RING finger domain/helicase domain protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6PUW7_MAIZE)

HSP 1 Score: 55.8 bits (133), Expect = 8.090e-5
Identity = 47/140 (33.57%), Postives = 69/140 (49.29%), Query Frame = 0
Query:   12 RQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHG----VWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLR 147
            R++A +DVVVTTY I+ A EVP+ +  +    K+             R  +   Q K +K+    K SN   L  G    V W RVV D A+ + N R+  A A  GL  + RWC+    +   I+N+ D ++S  RFL+
Sbjct:  205 RELAKYDVVVTTYTIV-ANEVPKQMADDDADQKNSEE----PSASNKRKPSANMQNKAKKKKKKLKDSN-FDLDSGPIARVRWFRVVLDEAQTIKNFRTVVARACCGLRAKRRWCL----SGTPIQNAIDDLFSYFRFLK 334          
BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: K7TWQ7_MAIZE (Putative SNF2-domain/RING finger domain/helicase domain protein n=3 Tax=Zea mays TaxID=4577 RepID=K7TWQ7_MAIZE)

HSP 1 Score: 55.8 bits (133), Expect = 8.160e-5
Identity = 47/140 (33.57%), Postives = 69/140 (49.29%), Query Frame = 0
Query:   12 RQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHG----VWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLR 147
            R++A +DVVVTTY I+ A EVP+ +  +    K+             R  +   Q K +K+    K SN   L  G    V W RVV D A+ + N R+  A A  GL  + RWC+    +   I+N+ D ++S  RFL+
Sbjct:  473 RELAKYDVVVTTYTIV-ANEVPKQMADDDADQKNSEE----PSASNKRKPSANMQNKAKKKKKKLKDSN-FDLDSGPIARVRWFRVVLDEAQTIKNFRTVVARACCGLRAKRRWCL----SGTPIQNAIDDLFSYFRFLK 602          
BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: K7UB18_MAIZE (Putative SNF2-domain/RING finger domain/helicase domain protein n=11 Tax=Zea mays TaxID=4577 RepID=K7UB18_MAIZE)

HSP 1 Score: 55.8 bits (133), Expect = 8.790e-5
Identity = 47/140 (33.57%), Postives = 69/140 (49.29%), Query Frame = 0
Query:   12 RQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHG----VWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLR 147
            R++A +DVVVTTY I+ A EVP+ +  +    K+             R  +   Q K +K+    K SN   L  G    V W RVV D A+ + N R+  A A  GL  + RWC+    +   I+N+ D ++S  RFL+
Sbjct:  473 RELAKYDVVVTTYTIV-ANEVPKQMADDDADQKNSEE----PSASNKRKPSANMQNKAKKKKKKLKDSN-FDLDSGPIARVRWFRVVLDEAQTIKNFRTVVARACCGLRAKRRWCL----SGTPIQNAIDDLFSYFRFLK 602          
BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: A0A1R1YAY0_9FUNG (DNA repair protein RAD5 n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1YAY0_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 9.390e-5
Identity = 48/170 (28.24%), Postives = 79/170 (46.47%), Query Frame = 0
Query:    7 RRLTARQVASFDVVVTTYDIL---KAKEVPRVVEPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHGVWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLRV-PAEI--ALVEAAGCLFYSNRPSHV 170
            R  +A+ ++SFDVV+TTY+I+    AKEV ++   + TS   P                                   VS L  ++W RVV D A I+ + ++ ++ A+  L  R+RWC+        I+N  D ++SLV+FL   P ++    V+  G  F+SN   ++
Sbjct:  760 RTRSAKFLSSFDVVITTYNIIFNEYAKEVRQLKPQDDTSFSIPDR-------------------------------PYVSPLQHLFWDRVVLDEAHIIKDRKTWQSRASCSLTARSRWCLTGTP----IQNRIDDLYSLVKFLHFSPLDLWYTWVKYIGAPFHSNLSENI 894          
BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Match: A0A1R1XY58_9FUNG (DNA repair protein RAD5 n=1 Tax=Smittium culicis TaxID=133412 RepID=A0A1R1XY58_9FUNG)

HSP 1 Score: 55.8 bits (133), Expect = 9.430e-5
Identity = 48/170 (28.24%), Postives = 79/170 (46.47%), Query Frame = 0
Query:    7 RRLTARQVASFDVVVTTYDIL---KAKEVPRVVEPEATSLKSPRSCRRAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHGVWWGRVVADGAEILVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLRV-PAEI--ALVEAAGCLFYSNRPSHV 170
            R  +A+ ++SFDVV+TTY+I+    AKEV ++   + TS   P                                   VS L  ++W RVV D A I+ + ++ ++ A+  L  R+RWC+        I+N  D ++SLV+FL   P ++    V+  G  F+SN   ++
Sbjct:  795 RTRSAKFLSSFDVVITTYNIIFNEYAKEVRQLKPQDDTSFSIPDR-------------------------------PYVSPLQHLFWDRVVLDEAHIIKDRKTWQSRASCSLTARSRWCLTGTP----IQNRIDDLFSLVKFLHFSPLDLWYTWVKYVGAPFHSNLSENI 929          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2257.6010.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LB47_ECTSI4.980e-4757.80SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KIY1_9PHAE1.030e-4354.01SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A1V9ZDT9_9STRA2.720e-529.85SNF2 family DNA/RNA helicase n=1 Tax=Achlya hypogy... [more]
A0A1D6PUW7_MAIZE8.090e-533.57Putative SNF2-domain/RING finger domain/helicase d... [more]
K7TWQ7_MAIZE8.160e-533.57Putative SNF2-domain/RING finger domain/helicase d... [more]
K7UB18_MAIZE8.790e-533.57Putative SNF2-domain/RING finger domain/helicase d... [more]
A0A1R1YAY0_9FUNG9.390e-528.24DNA repair protein RAD5 n=1 Tax=Smittium culicis T... [more]
A0A1R1XY58_9FUNG9.430e-528.24DNA repair protein RAD5 n=1 Tax=Smittium culicis T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 225..252
NoneNo IPR availablePANTHERPTHR45626FAMILY NOT NAMEDcoord: 8..149
IPR000330SNF2-related, N-terminal domainPFAMPF00176SNF2_Ncoord: 6..148
e-value: 2.5E-9
score: 36.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2257contigH-paniculata_contig2257:4745..8507 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2257.6010.1mRNA_H-paniculata_contig2257.6010.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2257 4595..8529 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2257.6010.1 ID=prot_H-paniculata_contig2257.6010.1|Name=mRNA_H-paniculata_contig2257.6010.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=361bp
MPLRERRRLTARQVASFDVVVTTYDILKAKEVPRVVEPEATSLKSPRSCR
RAAGEWRSRIVAVEGQTKTEKQAATTKMSNAVSLLHGVWWGRVVADGAEI
LVNPRSARAEAASGLVGRARWCMVDRENVDAIENSSDRMWSLVRFLRVPA
EIALVEAAGCLFYSNRPSHVAPAPRSGSSYLSERNNNNNNDGDGSDGSHC
RHGGFSPCTPGGVRARARTLGLSRGRQEEEEIEEIEEERERQRQRDDREH
RNNSLETDKRVSVSAGCGKTSNGPKGWKSTQGREADRPRRRQGGRTGRSK
SPLGGRGGRMRGVPSRRIERGRSRGQGDGVSRGGGAGLGLRREDVTYVEK
ALCFRRVQDR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000330SNF2_N