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Homology
BLAST of mRNA_H-paniculata_contig2256.6007.1 vs. uniprot
Match: D7FNZ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNZ8_ECTSI) HSP 1 Score: 198 bits (504), Expect = 7.500e-56 Identity = 99/154 (64.29%), Postives = 126/154 (81.82%), Query Frame = 1
Query: 1015 LAQAASALDPQRDKNTALPPPPALLLPVQRIRIAVAKLEDLLSEPSKWEEALSLLQSPPLADAEFRTTLDRYSDSNWEKHILGDLYRNQSVESIKALKEIMVFALEQQGKGVEISQDDIQDVGEAGRALVDSLNDFVSLAPPTDVKMIEKLVSD 1476
LA ASALDPQRD+ TA+PPP LLLPV ++R A AK+ DLL EPS WEEA SLL+SPPL++ +F LDRYSDSNWEKHILGDLYRNQ + SIKAL E+M FAL+QQ GV++SQ+D+ DV ++GRAL SL+DF++LAPP D+++++ LV+D
Sbjct: 79 LAAPASALDPQRDRRTAVPPPRPLLLPVVKLRAATAKVLDLLEEPSGWEEARSLLRSPPLSNPDFAKILDRYSDSNWEKHILGDLYRNQGLASIKALDEVMSFALQQQEDGVKVSQEDVDDVRDSGRALAASLDDFLALAPPEDLRLVKDLVAD 232
BLAST of mRNA_H-paniculata_contig2256.6007.1 vs. uniprot
Match: A0A836CFE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFE8_9STRA) HSP 1 Score: 118 bits (295), Expect = 1.420e-26 Identity = 66/177 (37.29%), Postives = 94/177 (53.11%), Query Frame = 1
Query: 1030 SALDPQRDKNTALPPPPALLLPVQRIRIAVAKLEDLLSEPSKWEEALSLLQSPPLADAEFRTTLDRYSDSNWEKHILGDLYRNQSVESIKALKEIMVFALEQQGK------------------------------GVEISQDDIQDVGEAGRALVDSLNDFVSLAPPTDVKMIEKLV 1470
+ALD QRD + A PPPPA LLP+ ++++ V ++ LL +P+ WE A L L+ +E+R D YS NW HIL DLYRNQ +E + AL +++ + LEQQ K I +DI D+ G L+ S++ F+SLAPP DV M+E+ V
Sbjct: 33 AALDSQRDASLARPPPPARLLPIMKVKLRVEGIQALLGDPAGWEAAREKLMDKALSKSEYRRVFDEYSTDNWGSHILADLYRNQGLEQLDALSDLLRYLLEQQAKLSADTASXXXXXXXXXXXXXXXXXXXXXXXXXXILPEDIADLRACGDGLMASIDAFLSLAPPADVAMVERAV 209
BLAST of mRNA_H-paniculata_contig2256.6007.1 vs. uniprot
Match: D8LMV5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMV5_ECTSI) HSP 1 Score: 112 bits (281), Expect = 6.730e-24 Identity = 52/133 (39.10%), Postives = 91/133 (68.42%), Query Frame = 1
Query: 1084 LLLPVQRIRIAVAKLEDLLSEPSKWEEALSLLQSPPLADAEFRTTLDRYSDSNWEKHILGDLYRNQSVESIKALKEIMVFALEQQGKGVEISQDDIQDVGEAGRALVDSLNDFVSLAPPTDVKMIEKLVSDSS 1482
LL+P R ++AV + L+ +P KW EA L+SPPLA A+F+ YSD++ E+H+ DLYR Q+ +++KA+ E++ + ++ KG +I ++D++D+ EAGR+++ ++DF++LAP DV M+ K +D +
Sbjct: 128 LLVPALRAKLAVQSVLKLMKDPEKWGEAREALKSPPLAPADFKECFRTYSDADPEQHLAFDLYRIQAQDALKAVSELLAYLASEKNKGSKIDREDVEDLEEAGRSVLQGIDDFLALAPREDVLMVAKNTADQA 260
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-10_004970.1 |
| Exons | 3 |
| Model size | 1877 |
| Cds size | 774 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2256.6007.1 >prot_H-paniculata_contig2256.6007.1 ID=prot_H-paniculata_contig2256.6007.1|Name=mRNA_H-paniculata_contig2256.6007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=258bp
MVLAWVIPAGFYNYHHSWEGRHSELHTIRKARAFRILPQPKSLQYERVRA
LCAPRWGAPHGDLSDNTAFEDTLCGRTLPREMFLRHAANALAGVMTIFAL
AQAASALDPQRDKNTALPPPPALLLPVQRIRIAVAKLEDLLSEPSKWEEA
LSLLQSPPLADAEFRTTLDRYSDSNWEKHILGDLYRNQSVESIKALKEIM
VFALEQQGKGVEISQDDIQDVGEAGRALVDSLNDFVSLAPPTDVKMIEKL
VSDSSPI* back to topmRNA from alignment at H-paniculata_contig2256:11802..16317- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2256.6007.1 ID=mRNA_H-paniculata_contig2256.6007.1|Name=mRNA_H-paniculata_contig2256.6007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4516bp|location=Sequence derived from alignment at H-paniculata_contig2256:11802..16317- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCTGGGATGATGATACTGTGTGGAGTGTTTACTTTGTGCGATGTGATG
GGGGGCACCAAAGTGGGTGATGGCGTTTTTTTCACCCCGATGACGTATTT
TGCACCAAATATTTTGCTGGAAATTGCTACGTTTGCAATGGGCAGCTAGC
GTATGCGTAACTGTCGGGGAAAAAAAAAACGTTCACATACAAGGATCTCT
TTTCGTTCGCATATCGGAAGACCGGGCGCTGTGTTGGAAGACGGAAGCGC
AGGCACACGTTCTTGATGACCCTAACTTTCCTGAGCTGACGGTGGAAGAA
TATTTCACAATCTATCGGCGCAGGAGAGGGATTCTGCTGCTCTGCTGACA
CGTTACCGTTCTCTGCGTGGTCAGAAGATAGATATCTCTGATCCGCGGTC
GTGGGATAGAGTCACCACTGTTTCACCTCGAGAGGTGGTATCACAGCTGG
GACCGACTTGAGCACAAGAGAGTGTCACGTAGATAAAGGCCGCACAATAG
CCGCCTTTCCTGCGCCATAACGCAACATTCAAACAGGTGCGACATTTCGT
TGTGCCGGAAAATAGTGAAATACAAATATCCACAGGCAGGTTTCGGTTTT
GCTCTCTGGGATCATACAGAGGCAAACGCGATCTATTGTCAGTTTCTGTT
CTTGGATCAAGTGGTCCTCTTAACCCACCAGAGTTCCCACAAGAAATCCA
ACACCACAACAGCATAAATGGTCCTTGCTTGGGTGATACCCGCTGGTTTC
TATAACTATCATCATTCCTGGGAGGGGCGACATTCTGAGCTGCACACCAT
CAGGAAGGCGAGAGCATTTCGTATTTTACCGCAACCTAAATCGTTGCAGT
ATGAACGTGTCCGGGCGTTATGTGCGCCGCGATGGGGAGCACCACATGGC
GATCTCTCCGACAACACCGCCTTCGAAGACACACTTTGCGGCAGGACACT
TCCACGGGAGATGTTCTTGCGGCACGCGGCCAATGCGCTCGCTGGAGTAA
TGACTATCTTCGCTCTTGCACAGGCAGCTTCCGCCCTCGACCCCCAACGC
GATAAAAACACGGCGTTACCACCACCTCCCGCCTTGCTCCTGCCCGTGCA
AAGGATCAGGGTAAGTTTGCTGTGACGAATAAATGCATATATTTGCGTAC
ATGATGTGGGTAGTTCGGGGTGGTGATTCAGTGGAGTTTGAAAGAGTTAT
TTGGGTGCGCCACCAGATTGTGTTTGGAGTCATGTTACAACGGTAATATT
ACCGTTGTAAAAGGATATCCTTGGGTTGGCTTCTACGATATTTGTAACGG
TCACATGGTGAGTATGCTTACTAGGTACTCTATACTATATTGTAGTGCTT
CATTTTGCTGAAAATCCGAGTGTCTCCACCAATTTGTAAAACGGTTTGTG
TATGCAATAAACACAATGTCAAGTCTTACTCCCGCTGCTGAAACAAAATG
GGACCCGATACTATACGTACAAACGAACACCTGCGTACCCGCTGGCAGAT
TTCATGTGGCATTCTCATGCGTTATACACGGACGATACATCATGCTTTTG
GACAGATCGCTGTAGCGAAGTTGGAGGACCTCCTGAGCGAGCCCAGTAAA
TGGGAGGAGGCGTTATCTTTGTTGCAATCCCCGCCGCTGGCGGATGCGGA
GTTCAGAACTACGCTGGATCGATATAGCGATTCCAACTGGGAGAAGCACA
TTCTCGGGGATCTCTATCGGAACCAGAGCGTGGAGAGTATCAAGGTCTGT
TTCTCTACGACTGGATATGAAAATAGAATAGGGTACTGCGGGGTTGCCGG
AATTGTTATTACTTCGATCGGGGCTCTCCTTTGCATGGTGTAGTTGGCCG
TCGATGTACCACTATCCCTTTCTTTCTTTCTCCGCGGTATATTCGGGTGG
CTGTTTTCCCGTGTTGCCCGAACCTCGGTATTTCCTCTGGCCGAATAGCA
ATGCTGTGTTTCCGTTATCTTCTTTGGAACACGCTGGGATGCAAGGAGCG
ACACAGAAGGCAGGGCTTGAATCACCCACACACACTCTCTCACCCCCTGG
ACATAGGCGAATGGAGCATTCGCAACCATCTCGAACTATCATTATTTGTT
TACACGTATTTATTCGTCTACAAGTCTAAGAATGGTCGGTCACGAGGTGG
TCGTATATCCGGCGAACAGTCATGCCGGTCCTGCTTTTTTCCGGGTTGTA
CTGTGCAGATTGAATACTCCATCTGCCCGAATTTTTCGATGCTCCATGGT
ATATCGAGTACACTGTATATCATTCACGTCACATGGACATCTTCCCCAAC
TCAAACAGATACAGTATTCATTCTAGATTTCTCGTGTTTATTCGTGTCTT
GTATTTGTATTTGTCCGGGGGGTGAAGACTTTCTTATCGCCCCGGAACGC
ACTTATGTGCGTGTAATTGCTGCTGGGCTATGTAAGTGACCTGTAGGCCT
TCTTGAACGCTGTGCAAGTGCCACTGGATATATATAGCACATGCAACAGC
GCAGAGCATGCAATGGGTGCTGTGGCACCACCCTTATCCGACGTCATGTG
TTCGTCTCGCATAGATTCCGATCGATATATATGCTTGGTTTACAGGGTTC
ATATTTTGACTGCGCAGACCCGTATATCGAAAATAGGATTCAATAGTAGA
CCTTGGACAAGCGGGCATGGATTATTACCTTTTATTTAGCTGTTTAACCA
TAATTAAGGTAAACCAGACAGCAGGGAGAATCTCCAGCATGGGGCTTTCT
GCTGCAAAGGATTATTTGTTGTTGCTCGTATAGCCCCTGTGATGCAGCCA
AGATCTCCGAGCTTCTTTCCACATTCCGCGCCAACAAACAGACCCACGTG
CCGCCCACTACTAGCGTAGCGATGTCCACCAAAAATTGGAAGAGTTTGCT
TTGGGCACTAGCTCCTCCTTGCGAAATGTTTTGCCCCATAGGAATGCTAC
TACTATACTACACTCTCCCGCCGACACCGCACTACTTTTACCTACCTCCA
ACATGATCCTCCCACGATCTTCCAGGATCTTGGCCAAAAGGTACCCTGGA
AATTCGTTATGATGTTCATATTTTTTAATACTGAGAACAATAGATATTTC
GCAAAGTGCTGGATCGCAATAAAGTGCACCCATATTACAACCTCCCCCAA
AAGAATGCCCTTATCGATCTTCTTGGGGATGTGGTTCAAGCCCTCCCTTC
CGTGAAACCTCTTCTCATCTTCAAAAGTGCTCGGCTGCAAGTGTGCGCAT
TTAATGTCGATACAGTATATCTGAATGATGACAAAGGGGCGACAGCGTTC
AGTCATCCAATATTGTTGTCGAATATGTTCACGGGGCCTAACCTTTCAAT
CTGTCACATGCACTGACTGTGTCCGATGAAGAAAAAAAATGAGGTTGGAT
TCAATTTTCGTGCTTTTTATGGTCATCATATTGCCAATTCTGCCTCTGGA
TGATGTCGCCCCCGTTTTCATTTACAAGGCGTTTCTCAGCATCCTCATCG
CCTGGGTACAGCAAAGTGTGTACCTAGGTACAGCACAGTGTGAAATAGTA
ATATCTGCAATCTACATGGTGCTACAGGCACGGTTTGCAAGAACGAAAGG
TAGACCAGAGTGTAGCATCTTCTTCCAGGGCCTCGGCGTCAGCACCTGCA
CGCAGTAGAAATAATCGCAACCGAAAGCACCACCTCACCGATGCCACCAA
CGGTCACTTCTAGAGAAGAGTCCCATACCATACGTGCTGAGACCAAAGGA
TTCATGAACTATCCCGCTATGCGGTATGGCGCCGTCATTTGCTCAATGTA
GTGTCAACTAGTGTCAACGCACTGTTGTCAATGTCCGTGCGGTCTCAACT
GCTGTAATCTCGACGCCTCCATTTCCCAGGATTGATTCGAAATATCTACG
CTGCTAACTTTGCACTGGTTGCACCCACAAACCCTCAGGCCCTGAAGGAA
ATAATGGTCTTCGCGCTCGAGCAGCAAGGCAAAGGGGTAGAAATATCCCA
GGACGATATCCAGGATGTGGGAGAGGCAGGGCGTGCGTTGGTGGACAGTT
TGAACGATTTTGTGTCGCTCGCGCCTCCGACTGACGTGAAAATGATCGAG
AAGCTTGTCAGCGATTCGTCGCCGATATGATAAGAAAAGAGAGCAGTTAC
GTTGGACTCCATAGTAGGGATATTTTACTGATGGCATCGAACATGTGCCA
AGGGCTGAAGAAATGTTTCGAGTGTTAGTCTTCTGCGTGTGTTTTTTTTG
CGCTCGTTAGACGACTTCTTGTGGCAGGATATTTTTGGGAGAAAAAAAAC
TTAGCGACTACTTTCGGTCGGGAAAATTAACATGCACCTGCACGTTAGGA
TCGAGCCCGGAGATTGGTTATCAGTCAGCAATAAATCGACGGTGGGGCAG
AGGAAGATAATCATTCAAGTTTTACTCATGCTCCACCACGACAATGAATC
CACGTAAGCCGATTGTTCTTGACTCGTACTGCGGGTGGGCTTTGGCCTAG
GCTCGTCGTTCTCCAG back to topCoding sequence (CDS) from alignment at H-paniculata_contig2256:11802..16317- >mRNA_H-paniculata_contig2256.6007.1 ID=mRNA_H-paniculata_contig2256.6007.1|Name=mRNA_H-paniculata_contig2256.6007.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at H-paniculata_contig2256:11802..16317- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCTTGCTTGGGTGATACCCGCTGGTTTCTATAACTATCATCATTC
CTGGGAGGGGCGACATTCTGAGCTGCACACCATCAGGAAGGCGAGAGCAT
TTCGTATTTTACCGCAACCTAAATCGTTGCAGTATGAACGTGTCCGGGCG
TTATGTGCGCCGCGATGGGGAGCACCACATGGCGATCTCTCCGACAACAC
CGCCTTCGAAGACACACTTTGCGGCAGGACACTTCCACGGGAGATGTTCT
TGCGGCACGCGGCCAATGCGCTCGCTGGAGTAATGACTATCTTCGCTCTT
GCACAGGCAGCTTCCGCCCTCGACCCCCAACGCGATAAAAACACGGCGTT
ACCACCACCTCCCGCCTTGCTCCTGCCCGTGCAAAGGATCAGGATGGTCC
TTGCTTGGGTGATACCCGCTGGTTTCTATAACTATCATCATTCCTGGGAG
GGGCGACATTCTGAGCTGCACACCATCAGGAAGGCGAGAGCATTTCGTAT
TTTACCGCAACCTAAATCGTTGCAGTATGAACGTGTCCGGGCGTTATGTG
CGCCGCGATGGGGAGCACCACATGGCGATCTCTCCGACAACACCGCCTTC
GAAGACACACTTTGCGGCAGGACACTTCCACGGGAGATGTTCTTGCGGCA
CGCGGCCAATGCGCTCGCTGGAGTAATGACTATCTTCGCTCTTGCACAGG
CAGCTTCCGCCCTCGACCCCCAACGCGATAAAAACACGGCGTTACCACCA
CCTCCCGCCTTGCTCCTGCCCGTGCAAAGGATCAGGATCGCTGTAGCGAA
GTTGGAGGACCTCCTGAGCGAGCCCAGTAAATGGGAGGAGGCGTTATCTT
TGTTGCAATCCCCGCCGCTGGCGGATGCGGAGTTCAGAACTACGCTGGAT
CGATATAGCGATTCCAACTGGGAGAAGCACATTCTCGGGGATCTCTATCG
GAACCAGAGCGTGGAGAGTATCAAGATCGCTGTAGCGAAGTTGGAGGACC
TCCTGAGCGAGCCCAGTAAATGGGAGGAGGCGTTATCTTTGTTGCAATCC
CCGCCGCTGGCGGATGCGGAGTTCAGAACTACGCTGGATCGATATAGCGA
TTCCAACTGGGAGAAGCACATTCTCGGGGATCTCTATCGGAACCAGAGCG
TGGAGAGTATCAAGGCCCTGAAGGAAATAATGGTCTTCGCGCTCGAGCAG
CAAGGCAAAGGGGTAGAAATATCCCAGGACGATATCCAGGATGTGGGAGA
GGCAGGGCGTGCGTTGGTGGACAGTTTGAACGATTTTGTGTCGCTCGCGC
CTCCGACTGACGTGAAAATGATCGAGAAGCTTGTCAGCGATTCGTCGCCG
ATATGAGCCCTGAAGGAAATAATGGTCTTCGCGCTCGAGCAGCAAGGCAA
AGGGGTAGAAATATCCCAGGACGATATCCAGGATGTGGGAGAGGCAGGGC
GTGCGTTGGTGGACAGTTTGAACGATTTTGTGTCGCTCGCGCCTCCGACT
GACGTGAAAATGATCGAGAAGCTTGTCAGCGATTCGTCGCCGATATGA back to top
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