mRNA_H-paniculata_contig2256.6006.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2256.6006.1
Unique NamemRNA_H-paniculata_contig2256.6006.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2256.6006.1 vs. uniprot
Match: A0A6H5KGY0_9PHAE (PNPLA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGY0_9PHAE)

HSP 1 Score: 348 bits (892), Expect = 1.960e-113
Identity = 183/316 (57.91%), Postives = 226/316 (71.52%), Query Frame = 3 
Query:   45 MRKMLGMVLFDHVLLATTAFRVPILSTLQSIGDRRTTRFSERYFSLDRPDDFRDVSRMSLALGVGDTNHDGIDDASPIATTPPKPVLSFPGGGIFFWWQAGAITALQERYDLCSLDMVGASAGALAATLAACDADMDLAMTIALDLCDANQVWSRPLGLAGVWGAMVEDWLDDLLPADADIMCLDRVHLLVLGMWPQFGRRIPISDFSSKEDLIKTCMASVHIPYFMNKKFTAWHRGCRFVDGSFQASQQDLSLGAHRPTVYIDYKDDEVMARRTDNFLKLTNRDGLLFMRERGYEHVQSLLAGGELDCLEGAALP 992
            MR    MV  ++VL    AF  PI S L+     ++T           PD      R++L+ G   +N +GI  +  +  +  KPVLSFPGGGIFFWWQAG I+ALQERY+L SLD VGASAG+LAA               ALDLCD N++W+RPLGLAGVWGAMVEDWLD+LLP DAD++C DRVHLLV+G+WP+  RR  +SDF+SK DLIK CMASVHIP+FM+K F+A HRG RFVDGSF+AS++DLSLG  RPTVY DY +DEVMA R   FL LTN++GLLFMR+RGY+HVQ++LA G+LDC++ AALP
Sbjct:    1 MRGFRAMVALNNVL-HVGAFLWPISSVLRGNTAPKSTYLPS---PAGTPDPAALRRRLTLSAG---SNDEGIIASPAVLPSSGKPVLSFPGGGIFFWWQAGVISALQERYNLSSLDFVGASAGSLAAXXXXXXXXXXXXXXXALDLCDTNEIWTRPLGLAGVWGAMVEDWLDELLPDDADVICRDRVHLLVIGIWPRPFRRRAVSDFTSKSDLIKACMASVHIPWFMDKHFSARHRGGRFVDGSFRASREDLSLGDGRPTVYFDYDEDEVMAARRGKFLSLTNQEGLLFMRQRGYDHVQTMLAEGKLDCIKEAALP 309
[Close]
BLAST of mRNA_H-paniculata_contig2256.6006.1 vs. uniprot
Match: A0A7S4C0Y1_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C0Y1_CHRCT)

HSP 1 Score: 196 bits (498), Expect = 2.990e-55
Identity = 117/251 (46.61%), Postives = 152/251 (60.56%), Query Frame = 3 
Query:  273 PIATTPPKPVLSFPGGGIFFWWQAGAITALQERYDLCSLDMVGASAGALAATLAACDADMDLAMTIALDLCDANQVWSRPL-GLAGVWGAMVEDWLDDLLPADADIMCLDRVHLLVLGM----WPQFGRRIPISDFSSKEDLIKTCMASVHIPYFMNKKFTAWHRGCRFVDGSFQ----ASQQDLSLGAHRPTVYIDYKDDEVMARR---TDNFLKLTNRDGLLFMRERGYEHVQSLLAGGELDCLEGAAL 989
            P +T    P L+FPGGGIFFWWQAGA+ AL ER+DL  +  VGASAGALAAT+AA   D   A+ IA DL D + V+ R   GL GVWG MV +WLD+LLP DAD+MC  RVH+LV  +     P F   + +SD+ S+ DLI   +AS H+P F++ ++TA  RG R VDGS      +S + + L    P V ID   D  M  R    ++FL+L +RDG+  M E G +HV  +   G L+ L   AL
Sbjct:   30 PASTLQQLPGLAFPGGGIFFWWQAGAVAALNERFDLARVPCVGASAGALAATIAATKVDPHRALDIAADLADRHGVYDRGAWGLYGVWGPMVREWLDELLPKDADVMCRGRVHILVKRVPRLRHPYF-EPVMLSDYRSRADLIDVNLASAHVPLFLDGRWTARLRGMRCVDGSLSLRPDSSLRRVVLPGRAPVVRIDSSGDLRMRERYSRREDFLRLASRDGVEEMLEWGVKHVAQMERDGALELLAPYAL 279
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BLAST of mRNA_H-paniculata_contig2256.6006.1 vs. uniprot
Match: A0A7S0MNQ6_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MNQ6_9CRYP)

HSP 1 Score: 195 bits (496), Expect = 1.140e-54
Identity = 102/229 (44.54%), Postives = 133/229 (58.08%), Query Frame = 3 
Query:  297 PVLSFPGGGIFFWWQAGAITALQERYDLCSLDMVGASAGALAATLAACDADMDLAMTIALDLCDANQVWSRPLGLAGVWGAMVEDWLDDLLPADADIMCLDRVHLLVLGMWPQFG--RRIPISDFSSKEDLIKTCMASVHIPYFMNKKFTAWHRGCRFVDGSFQASQQD----LSLGAHRPTVYIDYKDDEVMARRTDNFLKLTNRDGLLFMRERGYEHVQSLLAGGEL 965
            P++ FPGGGI+FWWQAGA+ ALQE Y L  LDM GASAGAL A LA C+ DMD A  +A  L D N VW RP GL G+WG M+  WL +LLP DA   C  RV + V  + P     RR+ + DF +K D+I  C+ASVHIP+F++ K TA HRG R VDGS   + +        G  +  + +    D  +A     FL+  + +G   +  RGY+H  +  A   L
Sbjct:   65 PLIVFPGGGIYFWWQAGAVKALQEMYTLDDLDMTGASAGALCAVLAGCNVDMDRAFELASRLADENGVWERPQGLMGIWGGMIRQWLHELLPDDAARRCSGRVAISVTALSPAVPPLRRLSVDDFETKGDVIDACLASVHIPFFLDGKATARHRGARCVDGSLTFALRRTPWLFKPGDRQAALVVHQSHDAGLAGDRPGFLETLSLEGFRELYRRGYDHTHAAHAAAAL 293
[Close]
BLAST of mRNA_H-paniculata_contig2256.6006.1 vs. uniprot
Match: A0A388K383_CHABU (Patatin n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388K383_CHABU)

HSP 1 Score: 201 bits (511), Expect = 1.150e-53
Identity = 114/242 (47.11%), Postives = 146/242 (60.33%), Query Frame = 3 
Query:  294 KPVLSFPGGGIFFWWQAGAITALQERYDLCSLDMVGASAGALAATLAACDADMDLAMTIALDLCDANQVWSRPLGLAGVWGAMVEDWLDDLLPADADIMCLDRVHLLVLGMWPQFGRRIP------ISDFSSKEDLIKTCMASVHIPYFMNKKFTAWHRGCRFVDGSFQASQQDLSLGAHRPTVYIDYKDDEVMARRTDNFLKL-TNRDG-------LLFMRERGYEHVQSLLAGGELDCLE 977
            +P+LSF GGGIFF+WQ GA  AL   +DL   DM GASAGALAATLAAC+ D + A  +A  L   N+VW RP GL G+WG M+  WLD+LLP +A  +C  R+H+ VL + P   RR P      +  F SK DLI  CMASVHIP+F++    A  R    VDGSF AS+  +S    RPTV++DY DDE +A +   FL L    +G       LL M  +G  HV+ LL+  +L  L+
Sbjct:  380 RPLLSFQGGGIFFYWQLGAARALSRHFDLDKADMAGASAGALAATLAACEVDAEEATKLAFQLSLDNRVWDRPTGLGGIWGPMIRSWLDELLPPNAAQLCDGRLHIYVLEL-PSLRRRSPAFVRRGVCQFHSKRDLIDACMASVHIPFFIDGGACARFRDRWCVDGSFLASKHSISPYPDRPTVWVDYMDDEDLASQRLRFLSLGAQGEGPQRTWQWLLTMISKGEAHVEKLLSDHKLAALD 620
[Close]
BLAST of mRNA_H-paniculata_contig2256.6006.1 vs. uniprot
Match: A0A7S0MR98_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MR98_9CRYP)

HSP 1 Score: 186 bits (472), Expect = 2.530e-51
Identity = 93/224 (41.52%), Postives = 132/224 (58.93%), Query Frame = 3 
Query:  285 TPPKPVLSFPGGGIFFWWQAGAITALQERYDLCSLDMVGASAGALAATLAACDADMDLAMTIALDLCDANQVWSRPLGLAGVWGAMVEDWLDDLLPADADIMCLDRVHLLVLGMWPQFG--RRIPISDFSSKEDLIKTCMASVHIPYFMNKKFTAWHRGCRFVDGSF----QASQQDLSLGAHRPTVYIDYKDDEVMARRTDNFLKLTNRDGLLFMRERGYEHV 938
            T   P++ FPGGGI+FWWQAGA+ ALQERYD+    + GASAGAL A LA C  DMD A+ +A  L   N VW R  GL G+WG+++ +WLD +LP +A  +C  RV + V  +   F   +R  + DF +K DL++ C+ASVHIP+F++ +  + HRG   VDGS     +            P + +D++ DE +  R   FL+  ++D    M + GY HV
Sbjct:   39 TDQPPLIVFPGGGIYFWWQAGAVKALQERYDIDKCSLTGASAGALIAVLAGCKIDMDYALQVAERLAVQNGVWGRACGLMGIWGSIIYEWLDIILPENAAELCRGRVSVSVTSVHSSFPPLKRRSVGDFGTKRDLMQACLASVHIPFFLDGRLFSGHRGAACVDGSLTFVLRGKPWHFRPDEPEPALLVDHRTDEALMARRWGFLQTISQDAFRHMYQLGYAHV 262
[Close]
BLAST of mRNA_H-paniculata_contig2256.6006.1 vs. uniprot
Match: A0A6U3R5T6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R5T6_9STRA)

HSP 1 Score: 185 bits (470), Expect = 9.960e-51
Identity = 105/230 (45.65%), Postives = 145/230 (63.04%), Query Frame = 3 
Query:  303 LSFPGGGIFFWWQAGAITALQER-YDLCSLDMVGASAGALAATLAACDADMDLAMTIALDLCDANQVWSRPLGLAGVWGAMVEDWLDDLLPADADIMCLDRVHLLVLGMWPQFGRRIPISDFSSKEDLIKTCMASVHIPYFMNKKFTAWHRGCRFVDGSFQASQQDLSLGAHRPTV-----YIDYKDDEVMARRTDNFLKLTNRDGLLFMRERGYEHVQSLLAGGELDCL 974
            + FPGGGIFF+WQAGA + L+E  YDL  + M GASAGALAATL   D D + A ++AL L +   VW RPLGL GVWG M+E WL+DLLP +A  M  +R+ LLV  + P F R   IS F SKEDL++  MASVH+P+F++ K T+  R    +DGSF+A  +D         V      +D+K D VM  +T +F+KLT+++G+  + E+G  + Q +   G+ D +
Sbjct:   84 IIFPGGGIFFYWQAGAASYLREAGYDLSDVTMSGASAGALAATLTLADVDFEEATSLALKLAEDAGVWDRPLGLQGVWGPMIETWLNDLLPDNAVEMVDERLSLLVTSI-PSF-RTDRISSFESKEDLVRCNMASVHLPWFLDGKLTSNFRQAPRIDGSFRAKTEDYFPQVKNGQVDDSLIILDWKSDPVMEGKTKDFIKLTSKEGIWDLLEQGRSYAQIMDKRGDFDTI 311
[Close]
BLAST of mRNA_H-paniculata_contig2256.6006.1 vs. uniprot
Match: A0A7S2IAY4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IAY4_9STRA)

HSP 1 Score: 184 bits (467), Expect = 3.660e-50
Identity = 107/231 (46.32%), Postives = 142/231 (61.47%), Query Frame = 3 
Query:  303 LSFPGGGIFFWWQAGAITALQER-YDLCSLDMVGASAGALAATLAACDADMDLAMTIALDLCDANQVWSRPLGLAGVWGAMVEDWLDDLLPADADIMCLDRVHLLVLGMWPQFGRRIPISDFSSKEDLIKTCMASVHIPYFMNKKFTAWHRGCRFVDGSFQASQQDL--SLGAHRPT------VYIDYKDDEVMARRTDNFLKLTNRDGLLFMRERGYEHVQSLLAGGELD 968
            + FPGGGIFF+WQAGA + L+E  YDL S+ M GASAGAL ATL   D D D A  +AL L +   VW RPLGL GVWG M+E WL+DLLP +A  M  DR+ LLV  + P F R   IS F+SKEDL+K  MASVH+P+F++ K T+  R    VDGSF+A   D    L     +      + +D+K D +M  +  +F+ LT+++G+  + ERG  H + +   G  D
Sbjct:   92 IIFPGGGIFFYWQAGAASYLREAGYDLSSVRMSGASAGALVATLTLTDVDFDEATRLALSLAEEAGVWERPLGLQGVWGPMIETWLNDLLPENAVEMVDDRLSLLVTAI-PSF-RTDRISSFNSKEDLVKCNMASVHLPWFLDGKLTSNFRDAPHVDGSFRAKPNDYFPELNGQELSEDDDSLIILDWKADPIMKGKAKDFVTLTSKEGIWGLVERGRSHAKIMDKRGAFD 320
[Close]
BLAST of mRNA_H-paniculata_contig2256.6006.1 vs. uniprot
Match: K0TQT9_THAOC (PNPLA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQT9_THAOC)

HSP 1 Score: 179 bits (455), Expect = 4.160e-49
Identity = 103/259 (39.77%), Postives = 151/259 (58.30%), Query Frame = 3 
Query:  216 MSLALGVGDTNHDGIDDASPIATTPPK-PVLSFPGGGIFFWWQAGAITALQER-YDLCSLDMVGASAGALAATLAACDADMDLAMTIALDLCDANQVWSRPLGLAGVWGAMVEDWLDDLLPADADIMCLDR-VHLLVLGMWPQFGRRIPISDFSSKEDLIKTCMASVHIPYFMNKKFTAWHRGCRFVDGSFQASQQDL--SLGAHRPTVYIDYKDDEVMARRTDNFLKLTNRDGLLFMRERGYEHVQSLLAGGELDCLE 977
            +++A      +  G  ++ PI +   + P + FPGGG+FF+WQAG +T LQE  YDL +  M GASAGAL+ATLA        A  +AL +   N VW RP+GL G+WG+++EDWLD LLP DA +   D  +H+LV  + P FG+   +S+F  + DLI+  MASVH+P+F++   T   RG   +DGSF AS  D        R  + +D+K D VM  +   F+K+ +   +  + +RG E+ + +   GE  CLE
Sbjct:   11 IAVAAVFAGVSQAGAFESRPIHSREQRGPAIVFPGGGLFFYWQAGVVTHLQEAGYDLSAATMSGASAGALSATLAKTGVSPIDATELALHMSKENGVWERPMGLQGIWGSIIEDWLDRLLPDDAALRVDDGCLHILVTPV-PSFGKS-RVSNFEDRSDLIRANMASVHLPWFLDSNLTTHFRGRACIDGSFLASPSDYLSDRDQDRQRLVLDFKRDPVMKDKAGEFIKVVSPQAIWDILDRGKEYARIMERSGEFACLE 267
[Close]
BLAST of mRNA_H-paniculata_contig2256.6006.1 vs. uniprot
Match: A0A8J5XJD5_DIALT (PNPLA domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJD5_DIALT)

HSP 1 Score: 174 bits (442), Expect = 4.530e-47
Identity = 102/221 (46.15%), Postives = 133/221 (60.18%), Query Frame = 3 
Query:  288 PPKPVLSFPGGGIFFWWQAGAITALQERYDLCSLDMVGASAGALAATLAACDADMDLAMTIALDLCDANQVWSRPLGLAGVWGAMVEDWLDDLLPADADIMCLDRVHLLVLGMWPQFGRRIPISDFSSKEDLIKTCMASVHIPYFMNKKFTAWHRGCRFVDGSFQASQ-QDLSLG-AHRPTVYIDYKDDEVMARRTDNFLKLTNRDGLLFMRERGYEHVQS 944
            P  P+++  GGGI FWWQAGAI  L+E+  L   + +GASAG+LAA LAA   DMD A   A+ L     +W RPLGLAGVWG +V +WLDDLLPADA      RV +LVL   P F RR+  S F SK DLI   +AS HIPYF++ +F+A  R  R++DGSF  S+ +D        P +Y+D   D    R   +FL+L   +G+  M E G  + +S
Sbjct:   32 PNMPLVACTGGGILFWWQAGAIHGLREQCALDEANFIGASAGSLAAVLAASGVDMDDAFEHAITLSKRANLWERPLGLAGVWGEIVREWLDDLLPADAAERARGRVTILVLRTLP-FPRRVRFSAFESKSDLIDCALASCHIPYFLDGRFSARFRRARWIDGSFLTSRTRDFRHDDGSAPMLYLDPAADPNAPR---DFLRLRTPEGVRAMMESGLAYARS 248
[Close]
BLAST of mRNA_H-paniculata_contig2256.6006.1 vs. uniprot
Match: A0A1Y1IDI1_KLENI (Patatin n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IDI1_KLENI)

HSP 1 Score: 175 bits (444), Expect = 2.570e-46
Identity = 98/248 (39.52%), Postives = 142/248 (57.26%), Query Frame = 3 
Query:  264 DASPIATTPPKPVLSFPGGGIFFWWQAGAITALQERYDLCSLDMVGASAGALAATLAACDADMDLAMTIALDLCDANQVWSRPLGLAGVWGAMVEDWLDDLLPADADIMCLDRVHLLVLGMWPQFG-----RRIPISDFSSKEDLIKTCMASVHIPYFMNKKFTAWHRGCRFVDGSFQASQQDLSLGAHRPTVYIDYKDDEVMARRTDNFLKLTNR--------DGLLFMRERGYEHVQSLLAGGELD 968
            +A+P++   P P++ FPGGG+FF+W  G +  LQ+  D+ +  M GASAGALA+ LAAC  DM  A   A  L    ++W R L LA VWG ++  WL DLLP +A  +C  R+HL VL + P        +R+P++DF  K DLI   +ASVHIP F+N      +RG R VDGS  A +  L++   R T+Y+D  +D  M  R + FL+L           + +  M +RG EH + + + G+L+
Sbjct:  114 EATPLSPDLP-PIICFPGGGMFFYWMIGVVNILQDEIDMTTAHMSGASAGALASVLAACGVDMRRAAEHAFQLSIDEKLWDRKLKLALVWGRLIRQWLWDLLPDNAAELCNGRIHLFVLEL-PGLRTGLHCKRVPVTDFKDKADLIDCALASVHIPIFINGHIWTEYRGSRCVDGSINADRLALNIDPRRHTLYVDPYEDPEMKERGNRFLELYGDNPGPEGTWEWINHMMQRGEEHARRISSAGQLE 359
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2256.6006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGY0_9PHAE1.960e-11357.91PNPLA domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S4C0Y1_CHRCT2.990e-5546.61Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S0MNQ6_9CRYP1.140e-5444.54Hypothetical protein (Fragment) n=2 Tax=Cryptomona... [more]
A0A388K383_CHABU1.150e-5347.11Patatin n=1 Tax=Chara braunii TaxID=69332 RepID=A0... [more]
A0A7S0MR98_9CRYP2.530e-5141.52Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A6U3R5T6_9STRA9.960e-5145.65Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S2IAY4_9STRA3.660e-5046.32Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K0TQT9_THAOC4.160e-4939.77PNPLA domain-containing protein n=1 Tax=Thalassios... [more]
A0A8J5XJD5_DIALT4.530e-4746.15PNPLA domain-containing protein n=2 Tax=Diacronema... [more]
A0A1Y1IDI1_KLENI2.570e-4639.52Patatin n=1 Tax=Klebsormidium nitens TaxID=105231 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2256contigH-paniculata_contig2256:4495..11047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score352.4
Seed ortholog evalue2.2e-94
Seed eggNOG ortholog2880.D7FNZ7
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.triglyceride catabolic process
EggNOG OGsKOG3773@1,KOG3773@2759
Ec32 ortholog descriptionPatatin/Phospholipase A2-related
Ec32 orthologEc-10_004960.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1580
Cds size990
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2256.6006.1prot_H-paniculata_contig2256.6006.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2256 4539..10501 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.628417-UTR-H-paniculata_contig2256:4494..45381622929626.628417-UTR-H-paniculata_contig2256:4494..4538Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2256 4495..4538 +
1691480941.3831358-UTR-H-paniculata_contig2256:4494..45381691480941.3831358-UTR-H-paniculata_contig2256:4494..4538Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2256 4495..4538 +
1622929626.742343-UTR-H-paniculata_contig2256:10501..110471622929626.742343-UTR-H-paniculata_contig2256:10501..11047Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2256 10502..11047 +
1691480941.4541137-UTR-H-paniculata_contig2256:10501..110471691480941.4541137-UTR-H-paniculata_contig2256:10501..11047Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2256 10502..11047 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.6403258-CDS-H-paniculata_contig2256:4538..48291622929626.6403258-CDS-H-paniculata_contig2256:4538..4829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 4539..4829 +
1691480941.3947034-CDS-H-paniculata_contig2256:4538..48291691480941.3947034-CDS-H-paniculata_contig2256:4538..4829Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 4539..4829 +
1622929626.6521194-CDS-H-paniculata_contig2256:5433..55951622929626.6521194-CDS-H-paniculata_contig2256:5433..5595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 5434..5595 +
1691480941.4057856-CDS-H-paniculata_contig2256:5433..55951691480941.4057856-CDS-H-paniculata_contig2256:5433..5595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 5434..5595 +
1622929626.6750228-CDS-H-paniculata_contig2256:6875..69921622929626.6750228-CDS-H-paniculata_contig2256:6875..6992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 6876..6992 +
1691480941.418769-CDS-H-paniculata_contig2256:6875..69921691480941.418769-CDS-H-paniculata_contig2256:6875..6992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 6876..6992 +
1622929626.6913972-CDS-H-paniculata_contig2256:7668..78141622929626.6913972-CDS-H-paniculata_contig2256:7668..7814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 7669..7814 +
1691480941.4292345-CDS-H-paniculata_contig2256:7668..78141691480941.4292345-CDS-H-paniculata_contig2256:7668..7814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 7669..7814 +
1622929626.713187-CDS-H-paniculata_contig2256:9341..94061622929626.713187-CDS-H-paniculata_contig2256:9341..9406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 9342..9406 +
1691480941.437821-CDS-H-paniculata_contig2256:9341..94061691480941.437821-CDS-H-paniculata_contig2256:9341..9406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 9342..9406 +
1622929626.7283108-CDS-H-paniculata_contig2256:10292..105011622929626.7283108-CDS-H-paniculata_contig2256:10292..10501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 10293..10501 +
1691480941.4457765-CDS-H-paniculata_contig2256:10292..105011691480941.4457765-CDS-H-paniculata_contig2256:10292..10501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 10293..10501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2256.6006.1

>prot_H-paniculata_contig2256.6006.1 ID=prot_H-paniculata_contig2256.6006.1|Name=mRNA_H-paniculata_contig2256.6006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=330bp
MRKMLGMVLFDHVLLATTAFRVPILSTLQSIGDRRTTRFSERYFSLDRPD
DFRDVSRMSLALGVGDTNHDGIDDASPIATTPPKPVLSFPGGGIFFWWQA
GAITALQERYDLCSLDMVGASAGALAATLAACDADMDLAMTIALDLCDAN
QVWSRPLGLAGVWGAMVEDWLDDLLPADADIMCLDRVHLLVLGMWPQFGR
RIPISDFSSKEDLIKTCMASVHIPYFMNKKFTAWHRGCRFVDGSFQASQQ
DLSLGAHRPTVYIDYKDDEVMARRTDNFLKLTNRDGLLFMRERGYEHVQS
LLAGGELDCLEGAALPKFVSRRRVLMDAE*
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mRNA from alignment at H-paniculata_contig2256:4495..11047+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2256.6006.1 ID=mRNA_H-paniculata_contig2256.6006.1|Name=mRNA_H-paniculata_contig2256.6006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6553bp|location=Sequence derived from alignment at H-paniculata_contig2256:4495..11047+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACTCTGGAGGTAATAAAGTTGCACCATAACAAGTTGACACAAATGCGC
AAGATGTTAGGCATGGTCCTGTTTGACCATGTCCTCTTGGCAACCACCGC
GTTTCGAGTCCCCATATTATCAACGCTTCAATCAATAGGCGATAGAAGAA
CGACAAGGTTCTCGGAGAGGTATTTTTCCTTAGATCGCCCGGATGATTTT
CGAGATGTCAGCAGGATGTCCTTGGCATTAGGCGTTGGTGATACGAATCA
TGATGGGATTGACGATGCGTCCCCTATCGCCACTACCCCGCCTAAGCCCG
TGTTGAGCTTTCCCGGGGGCGGGATATTTTTTTGGGTGAGTTTTTTTCTG
CCGTCTCCGCGATCAGATCACAATATGAGTCTCTGTTTTGGGTAAAGTCG
GCCGTTATATCTGCTACTTTTCCAGCACGCTAGCATCACTGCCGTCAGTA
AGACTAAGGTCCGATTTTGTCGTTCATGACCTGGCGAGTCCGCCTGATTT
ACTTATCTAAGTGCTTGCATAGCTGTGTAATTGCGGAAGGTTAGAATGAA
ACCGTGATGAATGCGCAACGCAAGAGGTCGCGACAACTTCCGCACGTGTG
CGACATGTTTGTGTCCGTCATATGTCATAACTTGGATACACAAACTGGTC
CCAACATGAGACGATCTGGACAACAGGCATATTTCTGTGGGTTAGGGCAG
GGGTTATTTCAGGGCTAGGGTTAGGGTAAATGTAGTCTCAGTAAAACATA
AAAGAGCGGTACAGTGTAGACAGTGGGGTTTTATGAATCCACACGATGCC
ACCAGGTTCATTTTTAGAGAGTGCATGGTGTTGAACGTGTGACAATAGCC
GCTCTGGTCCCCCGCGATCTTGCTGGCACAGCGCAAGAATTTCCCTTTTA
CCCCAGCCCCGCCCCCGTTTTGCACTTGTATCTTTGCAGTGGCAGGCTGG
AGCGATTACAGCTCTTCAGGAACGGTACGATTTGTGTTCGTTAGATATGG
TCGGAGCTTCAGCCGGGGCTTTAGCTGCTACGCTTGCTGCTTGCGACGCA
GACATGGATTTGGCCATGACTATCGCACTCGATTTGTGTGACGCTAATCA
GGTGCTACTCTCAATAGTTTCGTTTCCTTACAGAGCGGCTGCGTTTTTAT
TACATACCCTCTTAATAAAAGCAGGGTTCAATAGGACGCCAAAGATCATT
TATGCGTCTAAAACGCAACAATGATGTCGCCTATTGTTCAATCTTCTTGG
GCTGAACGCTCATGCCTATGGAAACTGCGATGCCTGGGCGATGTAAGCAA
GACGCATCGCAAGCGCCGCTGCTCTCCTCTTGCAGCTTTAAATCTGTCAG
CACCGACTAAACTAGCAAGAATTCCCCAAAAGCCTCAAGACTCCCCTTGA
ACTAGCGTGGTGTGCACACGTGCTATTGCTGCGGTATCATGCTAAAACTC
ATGGGGAGAAGGTTCCTTTTTTTGGGACATTATGCGCATCTCCAGTCTTG
CGTTCCCGTTACGCGTAAAGCGCCAACTCCGGAAGGTTCCTTTTTCTGAA
AGATGTCAACCAATTACTTTCAATGGCGGACATTTTGTTCGTTGATCGTT
CGCCTGCCTAGAAAGTTGGGCGTGGAAATCCACACCTGGCGGATGCGCAG
TCAAGGCTTTCACGGTGCTACTCATCGCTCGACTAAACCGAGGAACTCTC
TAATCACCATGCCTAAAATAGTAGGATGGCCGTGTTCTTTTGGTGTAATA
CCTGACCACCCGTCTGTGTCCGATAGCCCGAAATCAAAGCGCCGGGAGGA
GCTAGGCTTTGACAGCAATTCTCCCATCGTAGGGTGTTTCATACGCTTAA
CCCTTTCGGGACGAAGCCCTCCGATCTCTGCTTCCTGAGATATGTTTTGG
GGAATATATTTCATATAATAGAACACAATTTGTATCAGTCCTCGGGACGC
AACCCGTCGCAGATATCTATTTTTGGGCACCCAGTTCTGCTTTTGGGCAT
TCCTTTGGAACGGTCGAAAAACTGTCCATTTTCAACACTAATCGCACATC
AACCTTCAACCATATTTCGAACGGTAACGCGTCCCGACTGGGTTAACTCG
TACCACCTAGTTCTTGTGATCTCGACCCTCTTTTTACATCATCCGAATGG
CGTGACAACCACCAAAACCCAAGGACTCATGCTTATTGTATCTAATAATA
ACTCACTTAGCTAAAAACTGACGGCTGACTGTTTAGTTCAGTGGTTATTT
CTGTATCTAACACGGGTACCATAGTGCCGTACTGTTCTGTGCCCCTCTGT
ATTTCACTGTACTTTGTGGGCAGTGCTTGGCATGCACTGCTGTTGTGCGG
TGGATTCCCACACTCTATTTCTTCGTTTTAGGTCTGGTCTCGACCATTGG
GGTTGGCGGGCGTGTGGGGCGCTATGGTGGAGGATTGGCTGGATGACCTT
CTACCTGCAGACGCGGATATAATGTGCCTCGACCGGGTGCACCTGTTGGT
AGGTGGATTGAAGTTCTTGGTTAGGGTTATGTGCAGAGTTTGCTGTATGA
GACAGTACAGCAAGCACGGCCGTTGGTATTGTGCAAGGTAATCAGTAGTG
TTTGGTGAAAGGCAGGCCTGCTTCGAAGCTCTGTACGAAGCCCCCAATAC
ACCCAACACGATAGAACCGTGACGTGTACGCTTGAATGCAATTCAGCGCT
GCTATCACATTTCCGATTTATTTCGTATCCTGATACTGTACAGTGAGAAG
CTCGCTGTTTTGATGCACTGATGCAGTTCTGCAGGAAAGAGAAAGAGGTC
GTTAAGCAACAGCTTGCCACCCCGCAGATGGCCGACCCATTCATAGGGTA
CCTTCGTCCAATGCTGTAGGTTAGCAACAACTCAGCACTGTGAAAATTTG
TTTTTGCTGACGGGCTTAAAGATGATGACGTCGAATACGTCGCGAGAAGC
GAATTTCCTAGGCGTTAGTGATTGGGTCAAATTTTGGACGGCAAGTGTCC
TTGCCCCAGTAGCTTGTCCCGCTTAGGGGGGTACATATCGCTGGCCGTGC
GAAACTATCGGCCGACAGCAGGATAGTAAATAACATCAATTTTTCCTGAT
GTCGTCGTGTGTAATACCATGCCGGCAAATGCATTTATCTCGAGCATGTG
ATTGACGTGTAAACCATGTTACAGGTGCTGGGTATGTGGCCTCAGTTCGG
AAGGCGAATACCTATTTCCGACTTCTCCAGCAAGGAAGATCTAATCAAGA
CCTGCATGGCCTCGGTGCATATCCCGTACTTCATGAACAAGAAATTTACC
GCATGGCATCGAGGGTGCAGGTAAGCCAGGAACTTCGTTGTATGCACACA
AATGTTCATGCACGTTTTGTCCTATTCAAAATACACAACTTGCGGTCCCT
CCCGTATCCCATGTTTTTTATTTCTCCGTACAGGCATGGAACCTGCCCAT
AAAACATTTTTTCTCCTTATTTTTCGTGCTGATTTGTTTTCAGTAAACCC
TAGATTTGCGCACATTTGTCATTGCGCATTGGATCAACATGAACTCGGTG
CAGCACCCGCTGACTTATGCGCCACTCGCCTGTGAAAGGAAAAAATGGGG
AGATATGGAATTTGATGAGAAACAGTAGAAAAAGTGCGCCCCAAAACAGT
TATCCCTCACTTGGCAGTGTTCATCTCATACGCTGATTAATTCGTTGGAA
TGCTCTAGTCCTCCCTCAATATCGTGCAGATAATTTTTGTACAAACCGCA
TTTTTCGTGGAGTTTGCACTGGATGTCCTCCATTCAGTTCCAACAAGTGC
ATCGTAAAAGGCAGCAATCCCCCTGATTTTCCGTCAACTTTGAGGATTTG
AATATCCACCAATTCAGAATATCATAAGGCCCCAGGTGCAAATGAAAGCT
GATGTGTGGGTGCATGTCACATAATGTGCTTTTGTGTCGGTTAATGCCAA
AATTGGTCTCATAATGGCGTTTTAATCCCCAGAGTCGACATGTCCCATTT
TTAGTTTCCGTGAAAGAAGTACTTCTGGACGCCTTCTGCCAAGGAACGCT
TTTGTTATGTTTTTATACAATTTTGTTGACAAGAGGGATGCGCGCCACCG
TAGGCATACTAGGCCGCGAGAAAAAAACACTTATACTCCTGTATCGGTAG
CCGGTACCGCTCTCGGAACCATTTTAGGTTATTTAGTCTAGTTTACCAGA
TAATGAAGCTGTCACCAACTACACACCGGATGCTGCAGGGATATGCGCTG
TTTTCCTGTGCTCTTTGAAACGCACAATGATTTATTTGTCATGCATTGTC
GCACGTTACACGGCGACTCGTACTGCTTATTGAATCTCTCTCTTCTCGTT
TTTCCAGTTTCCCTGCGAGCACCAAACGCAAGACTTATTCTTGTAAAGTT
ATGAAATGCCCTATTCCGAGAAATCAAGAGGATTGAGTAATACACTAATA
TGGGTGTTCGTCCGAGATAAAAATAATACGGAAGCACTGCTGCCTTGGTG
ACCACCTCTTAATCGTCAGGGCCAAAGGCGCTACTGAGATATATTATTGG
TTTGCGGAAACAAGGATTGCTCTATGTCTTGAGGTTAGAAATGATGTAAC
TACGAAATTTTTGCGCCACAATAGGGACCTGAAATACGTTCATATTCCCG
AAATTATCTCGGATATTTCCGTTTTCAATGCAATCATGCATTCGTGTCCG
GGCTTGCACCGCGTCAGTCACAAGAGTAGAAATAGGATTCCCCATCCGGC
TTTGCTACGACTCTTTTCTAATGTACAATCTAGGCGCGAAATGATCTCTC
TCCCTGCATATATGTAAATGTGTGTTGCTTGTTCCACCGCACTTCAGGTT
CGTTGACGGATCTTTCCAAGCTAGTCAACAAGATCTCTCCCTCGGAGCAC
ACAGGCCGACCGGTGAGATTGACCCAGTATCCAATTATAAGGAGACCGTG
TCGATGATGCGTGATCAAAACGTGCTTTGGTGTATGATCAAAACCATTCT
TGTGATACGTGATTTGAAGGGCCGGTTGTCTCTCTCTACGGTTTAGTACT
CGGTATCGTCGACCACCATTCCTTCAGGCGATAAAATATATTTGAAGTGT
GGCCCGCGGCCAATCAGCGAAGCAAGACAAAACGTCACAAGCAAAAGATA
CCACGCCTGTGCCGTGGTCGGTGACCCCGAGGAACCATGTTCAACGTTCG
TGGTTCATGACTGCTCATGGAAGTTTTTTGTTTGAGCATTTTAATGTCCC
TACTGCGCTACGTATGTACGATGACTAGAAAGGCGGAATTGTAGGCAAGA
CACACATACAGAGGATGTTATTCTGAATTTGTTAGGCCAATCGTTGGGAA
GTGTAGATGTGAACATGTTTGAGCATGGTAACCCTGAGAACCTACTAATG
AAGTATTTCGATAGCAGAAACACACAGATTTTTTACATTGGTGCAGTGTC
GAGAGCCTCTAGAACGTGAGGTCTAACGATCGTAAAGACTGTGCAAACTT
GATGCCTGCGGCGATGATGACTAGGCTTGACGGATAAGTATTGACAATGT
TGATAAAATCACTTGTACGAATGCCAAGCGCTGCACTCTCTTGCCTTTCT
ATCCTTAGTACCTATCATATCTCCGAGAAAAGTTACATGCAACAGTGGAG
GCGTTTGTGTAAGTTTCCGTTCTTTTCACGTGGTCCGTCGTGTTTTTCGT
GGATAGTCGCGATATTTTCTACTCAAGAAATCCAATTCTGGAATACAACA
TGCCAGTATTTCTCCGCGCGTTATCCCTCTTTTACTTCGTCGCCCCAGTG
TACATCGACTACAAGGACGACGAGGTGATGGCACGCAGGACAGATAACTT
CTTGAAACTGACAAACCGGGACGGTCTATTGTTCATGCGCGAGAGGGGTT
ACGAACACGTGCAGTCCCTGCTGGCAGGGGGGGAGCTGGACTGTCTGGAA
GGCGCTGCGCTGCCTAAATTTGTCTCGCGCCGACGAGTGTTGATGGATGC
CGAGTAGCCCCATGGAGAGGGAGGAAACGCTGAGAGCGTCTATTTGCACA
CGGACGGGTTCACCTAGAAACTACTGAAATGCCAAATTTTGTATTTCTTT
CTGAAACATATTTTCTTGTACGTATATAGTTTCTTGTCATGTATATATTT
TCTTGCTCTGGGTAGCTGAGAAATATCCCCAAAAACGCCGCAAAGATAGA
GATATAAGGCGGCGATAGGCTTGGGTACCAGCATCCATGCACTGTTTATA
CCTTGCTTATGATACGAGAGGAACGGCTTTGTTATGACTGCGCGCCCACT
TGTAGAGCTTTGGTTGTGTATTAATAATATGCATGGCACTTTAAATGGTT
GCTGAATGGGTGTTTTGATGATAATCCGGGGAAAGATCATATGGAGAACT
GAAACATTGGAGGAAGCAGATCTGTCGGCTTCCAGCCATACGTGTTGTCG
CTGTCATCCCCTCGAGCACGAAAATGTATGTGCTCTTCGAGTATGTGCGG
CTAAATTTCCGACCAAAATACGGTTTCAGGGCAACTCCGGCTCGCGAGTG
GTG
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Coding sequence (CDS) from alignment at H-paniculata_contig2256:4495..11047+

>mRNA_H-paniculata_contig2256.6006.1 ID=mRNA_H-paniculata_contig2256.6006.1|Name=mRNA_H-paniculata_contig2256.6006.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1980bp|location=Sequence derived from alignment at H-paniculata_contig2256:4495..11047+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGCAAGATGTTAGGCATGGTCCTGTTTGACCATGTCCTCTTGGCAAC
CACCGCGTTTCGAGTCCCCATATTATCAACGCTTCAATCAATAGGCGATA
GAAGAACGACAAGGTTCTCGGAGAGGTATTTTTCCTTAGATCGCCCGGAT
GATTTTCGAGATGTCAGCAGGATGTCCTTGGCATTAGGCGTTGGTGATAC
GAATCATGATGGGATTGACGATGCGTCCCCTATCGCCACTACCCCGCCTA
AGCCCGTGTTGAGCTTTCCCGGGGGCGGGATATTTTTTTGGATGCGCAAG
ATGTTAGGCATGGTCCTGTTTGACCATGTCCTCTTGGCAACCACCGCGTT
TCGAGTCCCCATATTATCAACGCTTCAATCAATAGGCGATAGAAGAACGA
CAAGGTTCTCGGAGAGGTATTTTTCCTTAGATCGCCCGGATGATTTTCGA
GATGTCAGCAGGATGTCCTTGGCATTAGGCGTTGGTGATACGAATCATGA
TGGGATTGACGATGCGTCCCCTATCGCCACTACCCCGCCTAAGCCCGTGT
TGAGCTTTCCCGGGGGCGGGATATTTTTTTGGTGGCAGGCTGGAGCGATT
ACAGCTCTTCAGGAACGGTACGATTTGTGTTCGTTAGATATGGTCGGAGC
TTCAGCCGGGGCTTTAGCTGCTACGCTTGCTGCTTGCGACGCAGACATGG
ATTTGGCCATGACTATCGCACTCGATTTGTGTGACGCTAATCAGTGGCAG
GCTGGAGCGATTACAGCTCTTCAGGAACGGTACGATTTGTGTTCGTTAGA
TATGGTCGGAGCTTCAGCCGGGGCTTTAGCTGCTACGCTTGCTGCTTGCG
ACGCAGACATGGATTTGGCCATGACTATCGCACTCGATTTGTGTGACGCT
AATCAGGTCTGGTCTCGACCATTGGGGTTGGCGGGCGTGTGGGGCGCTAT
GGTGGAGGATTGGCTGGATGACCTTCTACCTGCAGACGCGGATATAATGT
GCCTCGACCGGGTGCACCTGTTGGTCTGGTCTCGACCATTGGGGTTGGCG
GGCGTGTGGGGCGCTATGGTGGAGGATTGGCTGGATGACCTTCTACCTGC
AGACGCGGATATAATGTGCCTCGACCGGGTGCACCTGTTGGTGCTGGGTA
TGTGGCCTCAGTTCGGAAGGCGAATACCTATTTCCGACTTCTCCAGCAAG
GAAGATCTAATCAAGACCTGCATGGCCTCGGTGCATATCCCGTACTTCAT
GAACAAGAAATTTACCGCATGGCATCGAGGGTGCAGGTGCTGGGTATGTG
GCCTCAGTTCGGAAGGCGAATACCTATTTCCGACTTCTCCAGCAAGGAAG
ATCTAATCAAGACCTGCATGGCCTCGGTGCATATCCCGTACTTCATGAAC
AAGAAATTTACCGCATGGCATCGAGGGTGCAGGTTCGTTGACGGATCTTT
CCAAGCTAGTCAACAAGATCTCTCCCTCGGAGCACACAGGCCGACCGGTT
CGTTGACGGATCTTTCCAAGCTAGTCAACAAGATCTCTCCCTCGGAGCAC
ACAGGCCGACCGTGTACATCGACTACAAGGACGACGAGGTGATGGCACGC
AGGACAGATAACTTCTTGAAACTGACAAACCGGGACGGTCTATTGTTCAT
GCGCGAGAGGGGTTACGAACACGTGCAGTCCCTGCTGGCAGGGGGGGAGC
TGGACTGTCTGGAAGGCGCTGCGCTGCCTAAATTTGTCTCGCGCCGACGA
GTGTTGATGGATGCCGAGTAGTGTACATCGACTACAAGGACGACGAGGTG
ATGGCACGCAGGACAGATAACTTCTTGAAACTGACAAACCGGGACGGTCT
ATTGTTCATGCGCGAGAGGGGTTACGAACACGTGCAGTCCCTGCTGGCAG
GGGGGGAGCTGGACTGTCTGGAAGGCGCTGCGCTGCCTAAATTTGTCTCG
CGCCGACGAGTGTTGATGGATGCCGAGTAG
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