mRNA_H-paniculata_contig2256.6005.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2256.6005.1
Unique NamemRNA_H-paniculata_contig2256.6005.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2256.6005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2256contigH-paniculata_contig2256:1787..2626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size696
Cds size696
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.556826-CDS-H-paniculata_contig2256:1786..21451622929626.556826-CDS-H-paniculata_contig2256:1786..2145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 1787..2145 -
1691480941.3667474-CDS-H-paniculata_contig2256:1786..21451691480941.3667474-CDS-H-paniculata_contig2256:1786..2145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 1787..2145 -
1622929626.5718634-CDS-H-paniculata_contig2256:2289..26261622929626.5718634-CDS-H-paniculata_contig2256:2289..2626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 2290..2626 -
1691480941.3748257-CDS-H-paniculata_contig2256:2289..26261691480941.3748257-CDS-H-paniculata_contig2256:2289..2626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2256 2290..2626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2256.6005.1prot_H-paniculata_contig2256.6005.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2256 1787..2626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2256.6005.1

>prot_H-paniculata_contig2256.6005.1 ID=prot_H-paniculata_contig2256.6005.1|Name=mRNA_H-paniculata_contig2256.6005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=232bp
MAHGQKSRWLKQFNQIVMEKGEDPIRLFARVDAVVNSLATLGVHKDEGEV
TQKIVDSLTSDYELEVRTLLYKDTITRTEVECMTRQRFTALAERRKPAGQ
ALFAGGSGRGGGGGNLSGRCLRCKLEGHFWRDCRARIIPAQSQEEAALAS
VESDHGEVHACTVLGISSESIDGVDGDQIQVDGLEKWRSDSGATYHMTCF
PEYMSNLRPSSDKVRVGGGRLLDIENYGTLTI
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mRNA from alignment at H-paniculata_contig2256:1787..2626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2256.6005.1 ID=mRNA_H-paniculata_contig2256.6005.1|Name=mRNA_H-paniculata_contig2256.6005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=840bp|location=Sequence derived from alignment at H-paniculata_contig2256:1787..2626- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCACGGTCAGAAGAGCAGGTGGCTGAAGCAATTTAATCAAATAGT
AATGGAGAAGGGTGAAGACCCTATCAGATTGTTTGCTAGGGTAGATGCAG
TTGTGAATTCCCTGGCAACCTTGGGTGTCCACAAGGATGAGGGCGAAGTC
ACCCAAAAGATTGTTGATAGCTTAACCTCTGACTACGAACTAGAAGTCCG
CACGCTCCTCTACAAGGATACAATTACCAGAACTGAAGTAGAGTGTATGA
CACGACAGCGTTTCACTGCACTTGCTGAAAGAAGGAAACCAGCAGGTCAG
GCCCTTTTTGCTGGGGGTTCAGGCCGCGGCGGAGGCGGTCGTGGAGGACG
AGGCGGCAGCGGCGCGCGCGGTGGCCGACACGGAATCAGAAATCGTGGCG
GGGGCCGCGGCAGCACGCAGAGCAGAGCCGCTAACGATGGCGGCGGAAAC
AACGCCAACACGACCGCTACATCTCCGCAAGGGGGCAACCTAAGCGGAAG
ATGTCTCCGCTGCAAGCTGGAGGGCCATTTCTGGCGGGACTGTAGGGCGC
GGATTATTCCTGCACAGTCGCAGGAAGAGGCCGCTTTGGCTTCTGTCGAG
AGTGACCATGGTGAGGTCCATGCGTGTACAGTGCTTGGTATTTCGAGTGA
AAGTATTGACGGGGTAGATGGGGATCAGATTCAGGTAGATGGCCTCGAAA
AATGGCGTAGTGACAGTGGTGCTACTTACCACATGACGTGTTTCCCCGAG
TACATGTCTAACCTCCGCCCCAGCAGTGATAAGGTTAGAGTTGGAGGTGG
TAGACTACTTGACATAGAAAACTATGGTACACTGACTATA
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Coding sequence (CDS) from alignment at H-paniculata_contig2256:1787..2626-

>mRNA_H-paniculata_contig2256.6005.1 ID=mRNA_H-paniculata_contig2256.6005.1|Name=mRNA_H-paniculata_contig2256.6005.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at H-paniculata_contig2256:1787..2626- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCACGGTCAGAAGAGCAGGTGGCTGAAGCAATTTAATCAAATAGT
AATGGAGAAGGGTGAAGACCCTATCAGATTGTTTGCTAGGGTAGATGCAG
TTGTGAATTCCCTGGCAACCTTGGGTGTCCACAAGGATGAGGGCGAAGTC
ACCCAAAAGATTGTTGATAGCTTAACCTCTGACTACGAACTAGAAGTCCG
CACGCTCCTCTACAAGGATACAATTACCAGAACTGAAGTAGAGTGTATGA
CACGACAGCGTTTCACTGCACTTGCTGAAAGAAGGAAACCAGCAGGTCAG
GCCCTTTTTGCTGGGGGTTCAGGCCGCGGCGGAGGCGATGGCGCACGGTC
AGAAGAGCAGGTGGCTGAAGCAATTTAATCAAATAGTAATGGAGAAGGGT
GAAGACCCTATCAGATTGTTTGCTAGGGTAGATGCAGTTGTGAATTCCCT
GGCAACCTTGGGTGTCCACAAGGATGAGGGCGAAGTCACCCAAAAGATTG
TTGATAGCTTAACCTCTGACTACGAACTAGAAGTCCGCACGCTCCTCTAC
AAGGATACAATTACCAGAACTGAAGTAGAGTGTATGACACGACAGCGTTT
CACTGCACTTGCTGAAAGAAGGAAACCAGCAGGTCAGGCCCTTTTTGCTG
GGGGTTCAGGCCGCGGCGGAGGCGGGGGCAACCTAAGCGGAAGATGTCTC
CGCTGCAAGCTGGAGGGCCATTTCTGGCGGGACTGTAGGGCGCGGATTAT
TCCTGCACAGTCGCAGGAAGAGGCCGCTTTGGCTTCTGTCGAGAGTGACC
ATGGTGAGGTCCATGCGTGTACAGTGCTTGGTATTTCGAGTGAAAGTATT
GACGGGGTAGATGGGGATCAGATTCAGGTAGATGGCCTCGAAAAATGGCG
TAGTGACAGTGGTGCTACTTACCACATGACGTGTTTCCCCGAGTACATGT
CTAACCTCCGCCCCAGCAGTGATAAGGTTAGAGTTGGAGGTGGTAGACTA
CTTGACATAGAAAACTATGGTACACTGACTATAGGGGCAACCTAAGCGGA
AGATGTCTCCGCTGCAAGCTGGAGGGCCATTTCTGGCGGGACTGTAGGGC
GCGGATTATTCCTGCACAGTCGCAGGAAGAGGCCGCTTTGGCTTCTGTCG
AGAGTGACCATGGTGAGGTCCATGCGTGTACAGTGCTTGGTATTTCGAGT
GAAAGTATTGACGGGGTAGATGGGGATCAGATTCAGGTAGATGGCCTCGA
AAAATGGCGTAGTGACAGTGGTGCTACTTACCACATGACGTGTTTCCCCG
AGTACATGTCTAACCTCCGCCCCAGCAGTGATAAGGTTAGAGTTGGAGGT
GGTAGACTACTTGACATAGAAAACTATGGTACACTGACTATA
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