mRNA_H-paniculata_contig22551.6004.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22551.6004.1 vs. uniprot
Match: D8LS05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS05_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 7.270e-18 Identity = 40/72 (55.56%), Postives = 55/72 (76.39%), Query Frame = 3
Query: 183 LGVVPINYLKDGQHPAIKPDEEYPEWLWHLPQMSKAKLSRIPEEEMTVEQQRRFLQLKSRDDIKDQNASSRF 398
LGV PIN+LKDG+ P++ PDEEYPEWLW++ S A+L R E++ T+++ RRF+QL SR+ IK QN S +F
Sbjct: 35 LGVTPINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQNRSGKF 106
BLAST of mRNA_H-paniculata_contig22551.6004.1 vs. uniprot
Match: A0A6H5JCL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL9_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 1.560e-17 Identity = 41/72 (56.94%), Postives = 55/72 (76.39%), Query Frame = 3
Query: 183 LGVVPINYLKDGQHPAIKPDEEYPEWLWHLPQMSKAKLSRIPEEEMTVEQQRRFLQLKSRDDIKDQNASSRF 398
LGV PIN+LKDG+ P++ PDEEYPEWLW++ S A+L R EE+ T+++ RRF+QL SR+ IK QN S +F
Sbjct: 75 LGVTPINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKRKKEEDYTLDEFRRFVQLDSREKIKRQNRSGKF 146
BLAST of mRNA_H-paniculata_contig22551.6004.1 vs. uniprot
Match: A0A1V9ZKD2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKD2_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 2.230e-7 Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 3
Query: 192 VPINYLKDGQHPAIKPDEEYPEWLWHL--PQMSKAKLSRIPEEEM-TVEQQRRFLQLKSRDDIKDQNAS 389
P+N LKDG HP +KP EEYPEWL+ L P+ + +L R + + T+E++RR + L R IK++NAS
Sbjct: 54 APVNILKDGTHPELKPREEYPEWLYTLLDPKPTLGELERKGYDNLETMEEKRRLITLSYRKAIKEKNAS 122
BLAST of mRNA_H-paniculata_contig22551.6004.1 vs. uniprot
Match: A0A067CLQ6_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CLQ6_SAPPC) HSP 1 Score: 58.5 bits (140), Expect = 3.880e-7 Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 3
Query: 192 VPINYLKDGQHPAIKPDEEYPEWLWHL--PQMSKAKLSRIPEEEM-TVEQQRRFLQLKSRDDIKDQNAS 389
P+N LKDG HP +KP EEYPEWL+ L P+ + +L R E + ++E +RR ++L R IK++NAS
Sbjct: 38 APVNILKDGAHPELKPREEYPEWLFTLLEPKPTLGELERKGYENLESMEDKRRLIKLSYRRAIKEKNAS 106
BLAST of mRNA_H-paniculata_contig22551.6004.1 vs. uniprot
Match: A0A803LIQ4_CHEQI (Uncharacterized protein n=3 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LIQ4_CHEQI) HSP 1 Score: 59.3 bits (142), Expect = 4.240e-7 Identity = 28/68 (41.18%), Postives = 45/68 (66.18%), Query Frame = 3
Query: 189 VVPINYLKDGQHPAIKPDEEYPEWLWHL--PQMSKAKLSRIPEEEMTVEQQRRFLQLKSRDDIKDQNA 386
VV N LK+G P I+PD EYP+WLWHL + + ++L R E++ +E +R+++L +R IK+ N+
Sbjct: 69 VVGANILKEGTDPKIRPDSEYPDWLWHLLDKRAALSELQRKEAEDLPIEDLKRYVKLDNRARIKENNS 136
BLAST of mRNA_H-paniculata_contig22551.6004.1 vs. uniprot
Match: A0A024UUR7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUR7_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.870e-6 Identity = 31/69 (44.93%), Postives = 45/69 (65.22%), Query Frame = 3
Query: 192 VPINYLKDGQHPAIKPDEEYPEWLWHL--PQMSKAKLSRIPEEEM-TVEQQRRFLQLKSRDDIKDQNAS 389
P+N LKDG HP +KP EEYPEWL+ L P+ + +L R + + T+E +RR ++L R IK++N S
Sbjct: 52 APVNILKDGTHPELKPREEYPEWLFTLLDPKPTLGELERKGYDNLETMEDKRRLIKLSYRKAIKEKNNS 120
BLAST of mRNA_H-paniculata_contig22551.6004.1 vs. uniprot
Match: A0A6G0XZ19_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XZ19_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 3.480e-6 Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 3
Query: 192 VPINYLKDGQHPAIKPDEEYPEWLWHL--PQMSKAKLSRIPEEEM-TVEQQRRFLQLKSRDDIKDQNAS 389
P+N LKDG HP +KP EEYPEWL+ L P+ + +L R + + ++E +RR ++L R IK++N S
Sbjct: 52 APVNILKDGSHPELKPREEYPEWLFTLLEPKPTLGELERKGYDNLESLEDKRRLIKLSYRRAIKEKNTS 120
BLAST of mRNA_H-paniculata_contig22551.6004.1 vs. uniprot
Match: A0A0K9Q6Y4_SPIOL (Uncharacterized protein (Fragment) n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9Q6Y4_SPIOL) HSP 1 Score: 55.8 bits (133), Expect = 6.160e-6 Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 3
Query: 189 VVPINYLKDGQHPAIKPDEEYPEWLWHL----PQMSKAKLSRIPEEEMTVEQQRRFLQLKSRDDIKDQNA 386
VV N LKDG P I+PD EYP+WLW L P +S+ L R E++ E +R+++L +R IK+ N+
Sbjct: 64 VVGANILKDGTDPKIRPDSEYPDWLWQLLDKRPALSE--LQRKEAEDLPFEDLKRYVKLDNRARIKENNS 131
BLAST of mRNA_H-paniculata_contig22551.6004.1 vs. uniprot
Match: A0A7R9YEM7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEM7_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 1.400e-5 Identity = 27/72 (37.50%), Postives = 47/72 (65.28%), Query Frame = 3
Query: 189 VVPINYLKDGQHPAIKPDEEYPEWLWHLPQMS-KAKLSRIPE--EEMTVEQQRRFLQLKSRDDIKDQNASSR 395
VVPI +LK+ + I D++YPEWLW LPQ KA ++ E +E++V++ +R ++L+ R I++ N ++
Sbjct: 44 VVPIKFLKEQEEIKIMEDDQYPEWLWELPQPGIKALTKKLHENFDELSVDELQRLVKLRRRQKIREHNLRNK 115
BLAST of mRNA_H-paniculata_contig22551.6004.1 vs. uniprot
Match: UPI00054004A4 (39S ribosomal protein L54, mitochondrial n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00054004A4) HSP 1 Score: 54.3 bits (129), Expect = 1.870e-5 Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 3
Query: 189 VVPINYLKDGQHPAIKPDEEYPEWLWHL----PQMSKAKLSRIPEEEMTVEQQRRFLQLKSRDDIKDQNA 386
VV N LKDG P ++PD EYP+WL+ L P +S+ L R E+++VE +R+++L +R IK+ N+
Sbjct: 58 VVGANILKDGTDPKVRPDSEYPDWLFQLLDKRPALSE--LQRKEAEDLSVEDLKRYVKLDNRARIKENNS 125 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22551.6004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22551.6004.1 >prot_H-paniculata_contig22551.6004.1 ID=prot_H-paniculata_contig22551.6004.1|Name=mRNA_H-paniculata_contig22551.6004.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp MEAAPGCGNVNNIRRGMMAKAAKGKKSGKGDGGKAGAKKGDGVDLGVVPIback to top mRNA from alignment at H-paniculata_contig22551:1289..3537- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22551.6004.1 ID=mRNA_H-paniculata_contig22551.6004.1|Name=mRNA_H-paniculata_contig22551.6004.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2249bp|location=Sequence derived from alignment at H-paniculata_contig22551:1289..3537- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22551:1289..3537- >mRNA_H-paniculata_contig22551.6004.1 ID=mRNA_H-paniculata_contig22551.6004.1|Name=mRNA_H-paniculata_contig22551.6004.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig22551:1289..3537- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |