mRNA_H-paniculata_contig2254.6002.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2254.6002.1
Unique NamemRNA_H-paniculata_contig2254.6002.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2254.6002.1 vs. uniprot
Match: D7FU18_ECTSI (Phospholipid-transporting ATPase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU18_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 8.140e-28
Identity = 59/85 (69.41%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:    1 GRGVTDIGRAVAEGLGEEIPKEDLDAERVIAETPPVPHVRFYDPDLQRHLEGAAGEEQRKLLTEFFMTLAVCHTVIPERSTSSRA 255
            GRGVT I RAVA  LG EIP+EDL+AE VIA+ PPVPHVRFYDP L   L+ + GEEQR LL +FF+ LAVCHTVIPER  SSR+
Sbjct:  394 GRGVTTIARAVAAELGHEIPQEDLEAEAVIAKQPPVPHVRFYDPRLLEDLQSSTGEEQRALLLDFFLALAVCHTVIPERGLSSRS 478
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BLAST of mRNA_H-paniculata_contig2254.6002.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.970e-25
Identity = 61/96 (63.54%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:    1 GRGVTDIGRAVAEGLGEEIPKEDLDAERVIAETPPVPHVRFYDP----DLQRH-------LEGAAGEEQRKLLTEFFMTLAVCHTVIPERSTSSRA 255
            GRGVT IGRAVA  LG EIP+EDL+AE VIA+ PPVPHVRF+DP    DLQ         L+G+ GEEQR LL +FF+ LAVCHTVIPE   SSR+
Sbjct:  267 GRGVTTIGRAVAAELGHEIPQEDLEAEAVIAKQPPVPHVRFHDPRLLEDLQGSTVRFEGDLQGSKGEEQRALLLDFFLALAVCHTVIPEHGLSSRS 362
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BLAST of mRNA_H-paniculata_contig2254.6002.1 vs. uniprot
Match: T0Q3D8_SAPDV (Phospholipid-transporting ATPase n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q3D8_SAPDV)

HSP 1 Score: 64.3 bits (155), Expect = 2.260e-9
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:    1 GRGVTDIGRAVAEGLGEEIPKEDLDAERVIAETPPVPHVRFYDPDLQRHLEGAAGEEQRKLLTEFFMTLAVCHTVIPERSTSS 249
            GRG T+IG A     G+ +P E   A     + P VP+V +  P++  H+ G AG +Q   L  FF+ LAVCHTVIPER   S
Sbjct:  423 GRGTTEIGLAALRRAGQPVPAE---APPSSVKRPLVPYVNYDGPEIYDHMVGEAGPDQAARLHHFFLHLAVCHTVIPERREGS 502
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BLAST of mRNA_H-paniculata_contig2254.6002.1 vs. uniprot
Match: A0A1V9ZJT1_9STRA (Phospholipid-transporting ATPase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZJT1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.080e-8
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 1 
Query:    1 GRGVTDIGRAVAEGLGEEIPKEDLDAERVIAETPPVPHVRFYDPDLQRHLEGAAGEEQRKLLTEFFMTLAVCHTVIPERSTSSRAKT 261
            G+G T+IG A  +  G  +P+E  + ++  A    VP V F  P++  H++G+AG+ Q   L  FF+ LAVCHTVIPER   S   T
Sbjct:  911 GKGTTEIGLAAMKRAGLPVPEETTN-DKASA----VPFVNFDGPEIYDHMKGSAGKAQTDRLHNFFLHLAVCHTVIPERKEGSDVVT 992
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BLAST of mRNA_H-paniculata_contig2254.6002.1 vs. uniprot
Match: A0A1V9ZP48_9STRA (Phospholipid-transporting ATPase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZP48_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.400e-7
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:    1 GRGVTDIGRAVAEGLGEEIPKEDLDAERVIAETPPVPHVRFYDPDLQRHLEGAAGEEQRKLLTEFFMTLAVCHTVIPERSTSS 249
            GRG T+IG A     G+ +P +D   +      P VP+V +  P++  H+  AA + Q + L  FF+ LAVCHTVIPER   S
Sbjct: 1006 GRGTTEIGLAALRRAGKPLPPDDSATDT----KPRVPYVNYDGPEIFEHM--AAADAQARRLHHFFLHLAVCHTVIPERREGS 1082
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BLAST of mRNA_H-paniculata_contig2254.6002.1 vs. uniprot
Match: A0A024U8V7_9STRA (Phospholipid-transporting ATPase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U8V7_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.800e-6
Identity = 31/87 (35.63%), Postives = 46/87 (52.87%), Query Frame = 1 
Query:    1 GRGVTDIGRAVAEGLGEEIPKEDLDAERVIAETPPVPHVRFYDPDLQRHLEGAAGEEQRKLLTEFFMTLAVCHTVIPERSTSSRAKT 261
            G G T+IG A  +   +  P   ++  +  A    VP+V F  P+L  H+ G  G +Q+  +  FF+ LA+CHTVIPER   +   T
Sbjct:  418 GHGTTEIGLAALKRANKTEPLPPIEETKRKANV--VPNVNFDGPELFDHMAGGLGSDQKDRIDWFFLHLAICHTVIPERREGTNELT 502
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BLAST of mRNA_H-paniculata_contig2254.6002.1 vs. uniprot
Match: A0A662XYF9_9STRA (Phospholipid-transporting ATPase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XYF9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.330e-5
Identity = 35/87 (40.23%), Postives = 48/87 (55.17%), Query Frame = 1 
Query:    1 GRGVTDIGRAVAEGLGEEIPKEDLDAERVIAETPPV----PHVRFYDP--DLQRHLEGAAGEEQRKLLTEFFMTLAVCHTVIPERST 243
            GRG T+IGR     LG     +DL A  V+A++ PV     +V F DP  DL+R  +     EQ   + +FF+ LAVCH+V+ E  T
Sbjct:  500 GRGTTEIGREATRRLG-----KDLSASDVLADSTPVVTKTDNVNFLDPAGDLERDSDARLHPEQAARIHDFFVHLAVCHSVVRETHT 581
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BLAST of mRNA_H-paniculata_contig2254.6002.1 vs. uniprot
Match: A0A0P1AE94_PLAHL (Phospholipid-transporting ATPase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AE94_PLAHL)

HSP 1 Score: 53.1 bits (126), Expect = 1.810e-5
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 1 
Query:    1 GRGVTDIGRAVAEGLGEEIPKEDLDAERVIAETPPV----PHVRFYDP--DLQRHLEGAAGEEQRKLLTEFFMTLAVCHTVIPERSTSSRAKT 261
            GRG T+IGR     LG     +DL A  V+A++ P+     +V F DP  DL+R  +     EQ   + +FF+ LAVCH+V+ E  + + + T
Sbjct:  502 GRGTTEIGREATRRLG-----KDLSASDVLADSTPILMKTDNVNFLDPAGDLERDSDARLHPEQATRIHDFFVHLAVCHSVVRESLSETESGT 589
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BLAST of mRNA_H-paniculata_contig2254.6002.1 vs. uniprot
Match: A0A8K0E5Q3_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0E5Q3_9ROSA)

HSP 1 Score: 52.8 bits (125), Expect = 2.430e-5
Identity = 31/79 (39.24%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:    1 GRGVTDIGRAVAEGLGEEIPKEDLDAERVIAETPPVPHVRFYDPDLQRHLEGA-AGEEQRKLLTEFFMTLAVCHTVIPE 234
            GRGVT++ RA+A   GEE+ +ED DAE V    PP+    F D   +R + G    E    ++ +F   LA+C T +PE
Sbjct:  450 GRGVTEVERAMARRKGEELTREDEDAEDVEVAKPPIKGFNFTD---ERIMNGNWINEPHADVIQKFLQLLAICQTALPE 525
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BLAST of mRNA_H-paniculata_contig2254.6002.1 vs. uniprot
Match: A0A7S0HEK8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HEK8_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 3.090e-5
Identity = 33/92 (35.87%), Postives = 50/92 (54.35%), Query Frame = 1 
Query:    1 GRGVTDIGRAVAEGLGEEIP---KEDLDAERVIAETPPVPHVRFYDPDLQRHLEGAAGEEQRKLLTEFFMTLAVCHTVIPERSTSSRAKTAA 267
            G+G T++G A  + LG  +P   K++  A +V         V F  P+L   L G  GEEQ++   +FF+ LA+CHTV+ E   + R  +AA
Sbjct:  451 GKGTTEMGVARLKRLGLPLPPPTKDNSSANKV---------VNFDGPELHAALNGEGGEEQQRKCRDFFLHLALCHTVVAETVGNDRRLSAA 533
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2254.6002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FU18_ECTSI8.140e-2869.41Phospholipid-transporting ATPase, putative n=1 Tax... [more]
A0A6H5KPG5_9PHAE2.970e-2563.54P-type phospholipid transporter n=1 Tax=Ectocarpus... [more]
T0Q3D8_SAPDV2.260e-943.37Phospholipid-transporting ATPase n=2 Tax=Saprolegn... [more]
A0A1V9ZJT1_9STRA1.080e-841.38Phospholipid-transporting ATPase n=1 Tax=Thraustot... [more]
A0A1V9ZP48_9STRA2.400e-740.96Phospholipid-transporting ATPase n=1 Tax=Achlya hy... [more]
A0A024U8V7_9STRA3.800e-635.63Phospholipid-transporting ATPase n=2 Tax=Aphanomyc... [more]
A0A662XYF9_9STRA1.330e-540.23Phospholipid-transporting ATPase n=2 Tax=Nothophyt... [more]
A0A0P1AE94_PLAHL1.810e-536.56Phospholipid-transporting ATPase n=1 Tax=Plasmopar... [more]
A0A8K0E5Q3_9ROSA2.430e-539.24Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A7S0HEK8_9EUKA3.090e-535.87Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2254contigH-paniculata_contig2254:7502..9937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue5.7e-25
Seed eggNOG ortholog2880.D7FU18
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons3
Model size399
Cds size396
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2254.6002.1prot_H-paniculata_contig2254.6002.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2254 7504..9937 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.3292649-CDS-H-paniculata_contig2254:7503..77361622929626.3292649-CDS-H-paniculata_contig2254:7503..7736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2254 7504..7736 -
1691480941.266752-CDS-H-paniculata_contig2254:7503..77361691480941.266752-CDS-H-paniculata_contig2254:7503..7736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2254 7504..7736 -
1622929626.3476167-CDS-H-paniculata_contig2254:8541..86321622929626.3476167-CDS-H-paniculata_contig2254:8541..8632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2254 8542..8632 -
1691480941.279098-CDS-H-paniculata_contig2254:8541..86321691480941.279098-CDS-H-paniculata_contig2254:8541..8632Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2254 8542..8632 -
1622929626.361647-CDS-H-paniculata_contig2254:9865..99371622929626.361647-CDS-H-paniculata_contig2254:9865..9937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2254 9866..9937 -
1691480941.2870212-CDS-H-paniculata_contig2254:9865..99371691480941.2870212-CDS-H-paniculata_contig2254:9865..9937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2254 9866..9937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2254.6002.1

>prot_H-paniculata_contig2254.6002.1 ID=prot_H-paniculata_contig2254.6002.1|Name=mRNA_H-paniculata_contig2254.6002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
GRGVTDIGRAVAEGLGEEIPKEDLDAERVIAETPPVPHVRFYDPDLQRHL
EGAAGEEQRKLLTEFFMTLAVCHTVIPERSTSSRAKTAAARRRAASVSVS
SSSRHQRHSISRAQAQRQRELSSGELFCDGGG
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mRNA from alignment at H-paniculata_contig2254:7502..9937-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2254.6002.1 ID=mRNA_H-paniculata_contig2254.6002.1|Name=mRNA_H-paniculata_contig2254.6002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2436bp|location=Sequence derived from alignment at H-paniculata_contig2254:7502..9937- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGGGGGGTGACGGACATCGGGAGGGCAGTGGCAGAGGGGCTGGGGGA
GGAGATTCCGAAGGAGGATTTGGTGAGTCTATTTTCGAGGGGGCGGGGCG
CGTGGGTGGGGAGGTCGAATGGACTTAGAGGATGTTTGGGTACCCTGCGT
AGTAGCTTGAAGGGAAATTTGCAAGGTTCTGCGCACAAGCGATTACAGTA
TTTTATACAGCGCTACATGTTTAATGTTATCGAGTTCTTTTTTTGCTTCC
GCAAAAATGAAGCAACACAGCCTCTATAAACGCCGTCCTAAGGCGTTTTT
TCCGCTGTTGAGGTTATGCAGCTGACCTCATATCTCATTTGTATATACTT
TAGCAGCGAAATTCGAAAATGACCACATCAAGGGGGGGGGAGGATCAAAA
ATAATCCCGCAACTTGTACCGTTTTTTACATGTCACGAATCATGTGTGTA
TATGAGCTATGATGACGATGATGTAGTGCTGTGTTATGAAAATTATTATT
CACGAGATAAATGTGCCTGCTTGCCTACTTGCGAGCGCAGCGAGGCGCTG
TTGGGGGGTCTAGCAAAGTACACAAGTCAGCAGAGAATTTACGGGCGTAG
CCGTGGCCCTGCCCTGTCCTGCCTCTACTCTCCTGAATCATATCGTGTTG
AGATATGGCAAGAGTCAAGAGTTAACGGCGTTTGACTTGTGAAGCATTGC
AAGCTATTTATTTAAGTTAGTTTGGTTTGTTGTTATGCCCTGAGGTCATT
TTCCAATCTTGCACTCGCACGTGACGCCTTCGTCTGCCTCTGTGATTTTT
GTTACCCTGTCTTGCCCTGCCCTGCTTCACGGTTCGCACGCGTTTGGTTG
ATGTATGTTCTAAAATGCTGTTGTTATTTTTGTAATTATTAATAATAATT
GTAGTCGAATAAATTAGTATATACCTACTATATTTTCAACGTAAGTGTAC
ATACCATAGACTATTTATCTTTCATAAGGACAAAGAACGTGTAAGTTTTT
TTCAGCACGGTGGGGATAAATATCTGTCATGTATGCAAGGGTCGACCTAC
AGTATCAGGGGATCAAAACATAAATACAAGGTGTTTCTATAAAGGAAATA
AACAGCATCGCGCTCGAAGCTGTACCTTCTTGGCGCATGACAGAAACACC
CTAGTCGGAGGGACAGAGAAAAAATAGTGCAGAAAAGGAGCGAAAATTGA
CCCTGTCGCTGGTAAGTCTCACATCACTTGTATCCCTCTGCGCTTATTTA
GTTTTGTCTCTTTTTCTGGCTCGCGTTTTTTTGTTTTGTTTTTCGTTGTG
TTCAGGATGCTGAGCGCGTGATCGCGGAGACACCGCCAGTTCCACACGTG
CGCTTTTATGACCCCGACTTGCAGCGACATCTTGAAGGAGCCGCAGGTGT
GGTGTGTGTGTGTGTGTGTGGGAGGGGGAGGGGGACTTGATTACAATAAT
TCCATTGTACCCCATGTTGAGGTTATGCACCTGAGTGTGTGTAATCTTCA
CTTGCACTTCTCAGCAAAACTAAGTCCACAAGCGGGGTGGGGGTATATAA
TAAACACTATATGACAGGCTGGGTTCTATTATAGAAAATAAATTATGTCA
GATACCCTCTCTCCCCCCCTACCCGACCCCACATTTAACTCCTGGGACTA
CGAAATGACCTCGCAAGGCGAGGGCTAAGGTGACAAGGATAAGTCAAAGG
TTTTTGACCCACATTTGGCAACATGGGAAAGGGCGATTAAATAGACATGA
GAGATCGCTCTGATAGGAACGGAGCTCCGTCTTCTCGAGGACGTGTGATC
AATGGTCAACGGTCGATGGACAGCCGTCTCATACAAGAGTAAGTACCTCT
CGCTAGACATGTTTGGGCGAATACCTGAATGTGGAAGCAGTGGAAAAGGT
TTTTGCTTCAGCCTTGCGGGGGTTAAAAAAAAAAAAAGTACCTCTCGCCT
TGTTTGATGTGATAGAAGTGTACAGTACACAAGTGAGCTTCGAGGTCAGC
TGCATAACCTTATCTTGAGGTGGGTTCGATGATGAGAGTATTTTATAGTA
ACTGTGTAAAGTTGGTTCGTTGACTGGTCGACTCGTGAGTGAGGCTCACG
ATGGATGCTTTTTTTTTTTTTGCTGTCATGCGTTCACCTGAAACGAATTA
ATTTCATGTTTACATGAGTACTCGCCCCTCCCCAAACCTCAAACCACACA
GGAGAAGAGCAACGAAAACTCCTGACGGAGTTTTTCATGACCCTCGCGGT
GTGCCACACGGTCATCCCGGAGCGAAGCACGTCGTCGCGAGCCAAGACGG
CCGCTGCCCGGAGGCGCGCCGCGAGCGTCTCTGTCAGCAGCAGCAGCAGG
CACCAGCGCCACTCGATCAGCCGAGCCCAGGCCCAGCGGCAGCGCGAGCT
GAGCAGCGGCGAGCTGTTTTGCGATGGGGGAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2254:7502..9937-

>mRNA_H-paniculata_contig2254.6002.1 ID=mRNA_H-paniculata_contig2254.6002.1|Name=mRNA_H-paniculata_contig2254.6002.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig2254:7502..9937- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGGGGGGTGACGGACATCGGGAGGGCAGTGGCAGAGGGGCTGGGGGA
GGAGATTCCGAAGGAGGATTTGGGGCGGGGGGTGACGGACATCGGGAGGG
CAGTGGCAGAGGGGCTGGGGGAGGAGATTCCGAAGGAGGATTTGGATGCT
GAGCGCGTGATCGCGGAGACACCGCCAGTTCCACACGTGCGCTTTTATGA
CCCCGACTTGCAGCGACATCTTGAAGGAGCCGCAGGATGCTGAGCGCGTG
ATCGCGGAGACACCGCCAGTTCCACACGTGCGCTTTTATGACCCCGACTT
GCAGCGACATCTTGAAGGAGCCGCAGGAGAAGAGCAACGAAAACTCCTGA
CGGAGTTTTTCATGACCCTCGCGGTGTGCCACACGGTCATCCCGGAGCGA
AGCACGTCGTCGCGAGCCAAGACGGCCGCTGCCCGGAGGCGCGCCGCGAG
CGTCTCTGTCAGCAGCAGCAGCAGGCACCAGCGCCACTCGATCAGCCGAG
CCCAGGCCCAGCGGCAGCGCGAGCTGAGCAGCGGCGAGCTGTTTTGCGAT
GGGGGAGGGGAGAAGAGCAACGAAAACTCCTGACGGAGTTTTTCATGACC
CTCGCGGTGTGCCACACGGTCATCCCGGAGCGAAGCACGTCGTCGCGAGC
CAAGACGGCCGCTGCCCGGAGGCGCGCCGCGAGCGTCTCTGTCAGCAGCA
GCAGCAGGCACCAGCGCCACTCGATCAGCCGAGCCCAGGCCCAGCGGCAG
CGCGAGCTGAGCAGCGGCGAGCTGTTTTGCGATGGGGGAGGG
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