mRNA_H-paniculata_contig22537.5999.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig22537.5999.1 vs. uniprot
Match: A0A6H5K3W8_9PHAE (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3W8_9PHAE) HSP 1 Score: 198 bits (504), Expect = 6.920e-59 Identity = 94/113 (83.19%), Postives = 104/113 (92.04%), Query Frame = 1
Query: 1 MLLLGRIITGVGVGCGFVVAPVYIAEITPPRVRGRLTSLTDISINLGIVIGYLIAFICAETIDSTSGKWRMMLGISIVPPFIILSSLCLLPESPRWLLGRGREAEAFYVLCTV 339
+LLLGRI+TG+GVGCGFVVAPVYIAEITPP +RGRLTSLTDISIN+GIVIGYL+AF A T++ SGKWR MLGISIVPPFIILSSLCLLPESPRWLLG+GRE EAF VLCT+
Sbjct: 157 VLLLGRIVTGIGVGCGFVVAPVYIAEITPPHIRGRLTSLTDISINMGIVIGYLVAFGVASTVEDDSGKWRTMLGISIVPPFIILSSLCLLPESPRWLLGKGREVEAFAVLCTI 269
BLAST of mRNA_H-paniculata_contig22537.5999.1 vs. uniprot
Match: A0A6H5JT77_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT77_9PHAE) HSP 1 Score: 147 bits (372), Expect = 2.860e-39 Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = 1
Query: 4 LLLGRIITGVGVGCGFVVAPVYIAEITPPRVRGRLTSLTDISINLGIVIGYLIAFICAETIDSTSGKWRMMLGISIVPPFIILSSLCLLPESPRWLLGRGREAEAFYVLCTVRGLPL 354
LL GR++TG+GVGCGFVVAPVYI EITPP +RG+L +LTDI IN+GI++GY+ F C E I KWR+MLG+ I+PP +I+ SL LPESPRWL+ RGR E + VL V P+
Sbjct: 286 LLTGRLLTGLGVGCGFVVAPVYITEITPPHIRGKLVALTDIMINIGILLGYITGFACQELIPPVWLKWRVMLGLGILPPAVIVISLTFLPESPRWLISRGRIREGYQVLGRVIDDPI 402
BLAST of mRNA_H-paniculata_contig22537.5999.1 vs. uniprot
Match: D8LJ49_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ49_ECTSI) HSP 1 Score: 147 bits (372), Expect = 3.390e-39 Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = 1
Query: 4 LLLGRIITGVGVGCGFVVAPVYIAEITPPRVRGRLTSLTDISINLGIVIGYLIAFICAETIDSTSGKWRMMLGISIVPPFIILSSLCLLPESPRWLLGRGREAEAFYVLCTVRGLPL 354
LL GR++TG+GVGCGFVVAPVYI EITPP +RG+L +LTDI IN+GI++GY+ F C E I KWR+MLG+ I+PP +I+ SL LPESPRWL+ RGR E + VL V P+
Sbjct: 185 LLTGRLLTGLGVGCGFVVAPVYITEITPPHIRGKLVALTDIMINIGILLGYITGFACQELIPPVWLKWRIMLGLGILPPAVIVISLTFLPESPRWLISRGRIREGYQVLGRVIDDPI 301
BLAST of mRNA_H-paniculata_contig22537.5999.1 vs. uniprot
Match: A0A4D9D9C2_9STRA (MFS domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9C2_9STRA) HSP 1 Score: 145 bits (367), Expect = 6.730e-39 Identity = 70/115 (60.87%), Postives = 87/115 (75.65%), Query Frame = 1
Query: 1 MLLLGRIITGVGVGCGFVVAPVYIAEITPPRVRGRLTSLTDISINLGIVIGYLIAFICAETIDSTSGKWRMMLGISIVPPFIILSSLCLLPESPRWLLGRGREAEAFYVLCTVRG 345
+LL+GRIITG+GVGCGFV+APVYIAEITPP +RG + SLTD+ IN+GIV+G ++ F C TI KWR+MLG+ +PP IILS L LPESPRWLL + R EA +VL + G
Sbjct: 116 VLLVGRIITGLGVGCGFVIAPVYIAEITPPEIRGLMVSLTDVCINVGIVLGSVVGFFCELTIADDDAKWRVMLGLGTIPPVIILSFLRCLPESPRWLLLQDRVPEARHVLKRIVG 230
BLAST of mRNA_H-paniculata_contig22537.5999.1 vs. uniprot
Match: D7FTG6_ECTSI (MFS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTG6_ECTSI) HSP 1 Score: 145 bits (367), Expect = 1.180e-38 Identity = 65/112 (58.04%), Postives = 85/112 (75.89%), Query Frame = 1
Query: 4 LLLGRIITGVGVGCGFVVAPVYIAEITPPRVRGRLTSLTDISINLGIVIGYLIAFICAETIDSTSGKWRMMLGISIVPPFIILSSLCLLPESPRWLLGRGREAEAFYVLCTV 339
LLLGR++TG+GVGC V+APVYI E+ PP VRG L SLTDI IN+GIV GY + +C++ +S S KWR M+GI ++PP +IL+ L L+PESPRWL+ GR A+A +VL V
Sbjct: 209 LLLGRVVTGIGVGCAMVIAPVYITELAPPDVRGMLVSLTDICINVGIVFGYAASLLCSDVFNSDSAKWRSMIGIGMLPPLLILACLSLMPESPRWLVAAGRNADALHVLKRV 320
BLAST of mRNA_H-paniculata_contig22537.5999.1 vs. uniprot
Match: A0A7S2WJJ0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WJJ0_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.450e-32 Identity = 64/115 (55.65%), Postives = 80/115 (69.57%), Query Frame = 1
Query: 1 MLLLGRIITGVGVGCGFVVAPVYIAEITPPRVRGRLTSLTDISINLGIVIGYLIAFICAETIDSTSGKWRMMLGISIVPPFIILSSLCLLPESPRWLLGRGREAEAFYVLCTVRG 345
+L+LGRI+TG+GVG FVV PVYI EITP VRG LT+ D+SINLGI+ GY+ F+ T S+ KWR MLG+ V P I+ ++L LPESPRWL+ RG+E EA VL G
Sbjct: 123 VLVLGRIVTGLGVGVAFVVTPVYITEITPSEVRGMLTTCFDVSINLGILFGYITGFVITVTDMSSEAKWRTMLGLGGVIPLIVAAALSKLPESPRWLMTRGKEDEASAVLLEFLG 237
BLAST of mRNA_H-paniculata_contig22537.5999.1 vs. uniprot
Match: A0A7R9Y9S9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9S9_9STRA) HSP 1 Score: 124 bits (311), Expect = 4.310e-31 Identity = 60/115 (52.17%), Postives = 79/115 (68.70%), Query Frame = 1
Query: 1 MLLLGRIITGVGVGCGFVVAPVYIAEITPPRVRGRLTSLTDISINLGIVIGYLIAFICAETIDSTSGKWRMMLGISIVPPFIILSSLCLLPESPRWLLGRGREAEAFYVLCTVRG 345
+LLLGRIITG+GVG F V PVY++EI P +RGRLT+L DISIN+GI+ +C E I ++ KWR MLG+ +VPP ++ L LLPESPR+L+ RG+ +A VL G
Sbjct: 108 VLLLGRIITGLGVGVSFTVCPVYVSEIAPAELRGRLTTLFDISINVGILXXXXXXXVCEEAISNSEAKWRTMLGLGLVPPLMVCLCLALLPESPRYLVMRGKMRKAVEVLTLTLG 222
BLAST of mRNA_H-paniculata_contig22537.5999.1 vs. uniprot
Match: A0A835Z5D9_9STRA (General substrate transporter (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5D9_9STRA) HSP 1 Score: 123 bits (309), Expect = 4.620e-31 Identity = 57/112 (50.89%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 4 LLLGRIITGVGVGCGFVVAPVYIAEITPPRVRGRLTSLTDISINLGIVIGYLIAFICAETIDSTSGKWRMMLGISIVPPFIILSSLCLLPESPRWLLGRGREAEAFYVLCTV 339
LL GR++TGVGVG +VAP+YIAE+ PP VRG L SLTDISINLGI++GY A + + S KWR M+G +PP ++L L +PESPRWL+ +G + VL +
Sbjct: 100 LLTGRVVTGVGVGAAMMVAPIYIAELAPPDVRGALVSLTDISINLGILLGYGGAILFDSVLTGESAKWRAMVGAGAIPPALVLMCLVCMPESPRWLIAKGNPRAGYSVLLRI 211
BLAST of mRNA_H-paniculata_contig22537.5999.1 vs. uniprot
Match: A0A6U1Q4B6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1Q4B6_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.560e-30 Identity = 55/101 (54.46%), Postives = 78/101 (77.23%), Query Frame = 1
Query: 28 GVGVGCGFVVAPVYIAEITPPRVRGRLTSLTDISINLGIVIGYLIAFICAETIDSTSGKWRMMLGISIVPPFIILSSLCLLPESPRWLLGRGREAEAFYVL 330
GV VG FV++P+Y AEI PP +RG+L +L+D+ IN+G+V+GY++AF+ I S + KWR+MLG+ +VPPF+IL +L LPESPRWL+ + +EAEA VL
Sbjct: 1 GVAVGWSFVISPMYNAEIAPPEIRGKLVALSDVFINIGLVLGYVLAFVFDNNI-SGAWKWRVMLGMGVVPPFLILLTLLFLPESPRWLMTQKKEAEALRVL 100
BLAST of mRNA_H-paniculata_contig22537.5999.1 vs. uniprot
Match: A0A7S0D0F0_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D0F0_9EUKA) HSP 1 Score: 121 bits (303), Expect = 8.250e-30 Identity = 54/113 (47.79%), Postives = 82/113 (72.57%), Query Frame = 1
Query: 1 MLLLGRIITGVGVGCGFVVAPVYIAEITPPRVRGRLTSLTDISINLGIVIGYLIAFICAETIDSTSGKWRMMLGISIVPPFIILSSLCLLPESPRWLLGRGREAEAFYVLCTV 339
+L +GRIITG+GVG G V+AP+Y++E+ PP RG L L D+ +N+GI+ GY++ +I ++ + SG+WR+M+G++I+PP II+ L L ESPRWL GR+A+A VL +
Sbjct: 121 ILFVGRIITGIGVGFGLVIAPLYLSEVVPPEKRGFLVCLFDVVLNVGILEGYIVGYIVHSSMSTASGRWRVMIGVAILPPLIIIMGLRYLSESPRWLYYVGRDAQAKEVLLKM 233 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22537.5999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22537.5999.1 >prot_H-paniculata_contig22537.5999.1 ID=prot_H-paniculata_contig22537.5999.1|Name=mRNA_H-paniculata_contig22537.5999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp MLLLGRIITGVGVGCGFVVAPVYIAEITPPRVRGRLTSLTDISINLGIVIback to top mRNA from alignment at H-paniculata_contig22537:222..3542- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22537.5999.1 ID=mRNA_H-paniculata_contig22537.5999.1|Name=mRNA_H-paniculata_contig22537.5999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3321bp|location=Sequence derived from alignment at H-paniculata_contig22537:222..3542- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22537:222..3542- >mRNA_H-paniculata_contig22537.5999.1 ID=mRNA_H-paniculata_contig22537.5999.1|Name=mRNA_H-paniculata_contig22537.5999.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig22537:222..3542- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |