prot_H-paniculata_contig2253.5997.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2253.5997.1
Unique Nameprot_H-paniculata_contig2253.5997.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length135
Homology
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 4.440e-25
Identity = 59/131 (45.04%), Postives = 74/131 (56.49%), Query Frame = 0
Query:    2 FKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKD-LRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKDVY 131
             K R++  GW  +H IDCG T+ PV R  SQL    IAA  G+ V  +D   AFL   ++EEVY RQ    EI D + G P  MKL KS YGL+QSP+         ++ IGF A +SDP VYV G+   Y
Sbjct:  951 MKARLIVQGWGQRHGIDCGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTY 1081          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A6H5JVC8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVC8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 5.950e-24
Identity = 57/131 (43.51%), Postives = 72/131 (54.96%), Query Frame = 0
Query:    2 FKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKD-LRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKDVY 131
             K R+   GW  ++ ID G T+ PV R  SQL    IAA  G+ V  +D   AFL   ++EEVY RQ    EI D + G P  MKL KS YGL+QSP+         ++ IGF A +SDP VYV G+   Y
Sbjct:   55 MKARLTVQGWGQRYGIDYGGTYAPVSRFSSQLVLMAIAAERGYVVETMDVVTAFLQSNVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGFTALLSDPCVYVYGAGPTY 185          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A6H5KCZ9_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ9_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.300e-21
Identity = 54/120 (45.00%), Postives = 68/120 (56.67%), Query Frame = 0
Query:    2 FKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKD-LRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDP 120
             K R++  GW  +H IDCG T+ PV R  SQL    IAA  G+ V  +D   AFL  K++EEVY RQ    EI D + G P  MKL KS YGL+QSP+         ++ IG  A +SDP
Sbjct:  387 MKARLIVQGWGQRHGIDCGGTYGPVSRFSSQLVFMAIAAERGYDVETMDVVTAFLQSKVEEEVYVRQAKGYEITDEVTGLPLVMKLKKSLYGLKQSPRNFGNAFAKGIKEIGSTALLSDP 506          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: UPI001CC1BEB7 (DDE-type integrase/transposase/recombinase n=1 Tax=Corallococcus sp. AS-1-6 TaxID=2874599 RepID=UPI001CC1BEB7)

HSP 1 Score: 93.2 bits (230), Expect = 2.030e-19
Identity = 56/126 (44.44%), Postives = 73/126 (57.94%), Query Frame = 0
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKG 126
            R+K R+V TG+S K+ ID   TF+PV R ES      IAA  G S+  +D + AFLNGKLDEE+Y +Q      K    + +  KL KS YGL+Q+P   ++ ID  L   GF    +D  VYVKG
Sbjct:  973 RYKARLVCTGYSQKYGIDYEETFSPVVRPESIRLLVAIAAQLGGSIHQMDVTTAFLNGKLDEEIYVKQPMGYVQKGFEDKVY--KLKKSLYGLKQAPLCWNKEIDGVLTKFGFTRNKADHGVYVKG 1096          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A8J6CVB0_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CVB0_9ROSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.450e-17
Identity = 46/129 (35.66%), Postives = 75/129 (58.14%), Query Frame = 0
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 129
            + K R+V  G+S ++ +D   TF PV R ++      +AA   W +  +D   AFLNG L EE+Y  Q    ++K    + + +K  K+ YGL+Q+P+A +  +D  L  +GF  ++S+P++YVK SKD
Sbjct:  195 KHKARLVVKGYSQQYGVDFEVTFAPVARLDTIKLLFALAAQKKWQIHQLDVKSAFLNGFLKEEIYIEQPDGFQVKGQEDKVYRLK--KALYGLKQAPRAWYDRVDASLSKLGFEKSLSEPTLYVKKSKD 321          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A438HQP6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HQP6_VITVI)

HSP 1 Score: 87.0 bits (214), Expect = 2.870e-17
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 0
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 129
            R K R+VA G+S +  +D   TF PV R ++      +AA  GW +  +D   AFLNGKL+EE+Y  Q     +     + +  KL K+ YGL+Q+P+A +  ID      GF+ + S+P++YVK SKD
Sbjct:  762 RLKARLVAKGYSQQPNVDFHETFAPVARLDTIRTIITVAAQKGWLLYQLDIKSAFLNGKLEEEIYVEQPQGFVVDGEENKVY--KLKKALYGLKQAPRAWYTQIDSYFIENGFIRSKSEPTLYVK-SKD 887          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A438FVW7_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FVW7_VITVI)

HSP 1 Score: 87.0 bits (214), Expect = 2.870e-17
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 0
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 129
            R K R+VA G+S +  +D   TF PV R ++      +AA  GW +  +D   AFLNGKL+EE+Y  Q     +     + +  KL K+ YGL+Q+P+A +  ID      GF+ + S+P++YVK SKD
Sbjct:  650 RLKARLVAKGYSQQPGVDFHETFAPVARLDTIRTIIAVAAQKGWLLYQLDIKSAFLNGKLEEEIYVEQPQGFVVDGEENKVY--KLKKALYGLKQAPRAWYTQIDSYFIENGFIRSKSEPTLYVK-SKD 775          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A2G8SFR3_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8SFR3_9APHY)

HSP 1 Score: 87.0 bits (214), Expect = 2.910e-17
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 0
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVK 125
            ++K R+VA G++  H +D   TF PV R  S      IA+ +GW +   DFS AFLN  LDE+VY  Q P  E  D RG+ F +KL K+ YGL+Q  +  + T+   L ++GF    +D  ++ K
Sbjct: 1074 KYKARLVARGFTQVHGVDYTETFAPVARLSSIRTIFAIASRNGWPIDVFDFSSAFLNSTLDEDVYLEQPPHHEFAD-RGK-FVLKLKKALYGLKQGGRKWYETLCAALADLGFGRVEADHGIFFK 1196          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A438H4J7_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438H4J7_VITVI)

HSP 1 Score: 86.7 bits (213), Expect = 3.870e-17
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 0
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 129
            R K R+VA G+S +  +D   TF PV R ++      +AA  GW +  +D   AFLNGKL+EE+Y  Q     +     + +  KL K+ YGL+Q+P+A +  ID      GF+ + S+P++YVK SKD
Sbjct:  613 RLKARLVAKGYSQQPGVDFHETFAPVARLDTIRTIIAVAAQKGWLLYQLDIKSAFLNGKLEEEIYVEQPQGFVVDGEENKVY--KLKKALYGLKQAPRAWYTQIDNYFIENGFIRSKSEPTLYVK-SKD 738          
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Match: A0A151T5R4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T5R4_CAJCA)

HSP 1 Score: 86.7 bits (213), Expect = 3.940e-17
Identity = 49/129 (37.98%), Postives = 74/129 (57.36%), Query Frame = 0
Query:    1 RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVDFSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKARHRTIDIDLRNIGFVATVSDPSVYVKGSKD 129
            R+K R+VA G++  H ID   TF PV +  S      +AA+  W +  +D   AFLNGKL+EEVY +  P  E ++        +L KS YGL+QSP+A        ++ +G+V + +D +++VK SKD
Sbjct:  911 RYKARLVAQGYTQTHGIDYEETFAPVAKLNSIRILISLAANLDWKLHQLDVKNAFLNGKLEEEVYMKLPPGFEGEN---NDVVCRLNKSLYGLKQSPRAWFTRFSTTMKQLGYVQSQADHTLFVKKSKD 1036          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2253.5997.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY84_9PHAE4.440e-2545.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JVC8_9PHAE5.950e-2443.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KCZ9_9PHAE1.300e-2145.00Integrase catalytic domain-containing protein (Fra... [more]
UPI001CC1BEB72.030e-1944.44DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A8J6CVB0_9ROSI1.450e-1735.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438HQP6_VITVI2.870e-1738.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FVW7_VITVI2.870e-1738.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G8SFR3_9APHY2.910e-1739.20Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A438H4J7_VITVI3.870e-1738.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A151T5R4_CAJCA3.940e-1737.98Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..129
e-value: 1.4E-19
score: 70.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2253contigH-paniculata_contig2253:16317..16721 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2253.5997.1mRNA_H-paniculata_contig2253.5997.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2253 16317..16721 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2253.5997.1 ID=prot_H-paniculata_contig2253.5997.1|Name=mRNA_H-paniculata_contig2253.5997.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
RFKGRVVATGWSVKHVIDCGSTFTPVYRTESQLPSPVIAASHGWSVIAVD
FSPAFLNGKLDEEVYRRQVPRLEIKDLRGRPFTMKLCKSTYGLRQSPKAR
HRTIDIDLRNIGFVATVSDPSVYVKGSKDVYIRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2