mRNA_H-paniculata_contig22516.5994.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22516.5994.1
Unique NamemRNA_H-paniculata_contig22516.5994.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22516.5994.1 vs. uniprot
Match: D7FMF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF4_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.780e-6
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 3 
Query:  102 KPTLMATIKAFFVSLINPHFTLKLEAKKSNQVHTVHGTGS 221
            KP+ +ATIKAFF SL+NPHF LKL+AKK  Q +TVHG+GS
Sbjct:   96 KPSFIATIKAFFQSLVNPHFALKLQAKKE-QHNTVHGSGS 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22516.5994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMF4_ECTSI2.780e-670.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22516contigH-paniculata_contig22516:715..3371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_000940.1
Exons2
Model size1416
Cds size123
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22516.5994.1prot_H-paniculata_contig22516.5994.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22516 1895..3258 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.4702847-UTR-H-paniculata_contig22516:714..18941622929625.4702847-UTR-H-paniculata_contig22516:714..1894Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22516 715..1894 -
1691480940.9029484-UTR-H-paniculata_contig22516:714..18941691480940.9029484-UTR-H-paniculata_contig22516:714..1894Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22516 715..1894 -
1622929625.5182412-UTR-H-paniculata_contig22516:3258..33711622929625.5182412-UTR-H-paniculata_contig22516:3258..3371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22516 3259..3371 -
1691480940.9299994-UTR-H-paniculata_contig22516:3258..33711691480940.9299994-UTR-H-paniculata_contig22516:3258..3371Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22516 3259..3371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.4865937-CDS-H-paniculata_contig22516:1894..19731622929625.4865937-CDS-H-paniculata_contig22516:1894..1973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22516 1895..1973 -
1691480940.9122467-CDS-H-paniculata_contig22516:1894..19731691480940.9122467-CDS-H-paniculata_contig22516:1894..1973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22516 1895..1973 -
1622929625.5041063-CDS-H-paniculata_contig22516:3214..32581622929625.5041063-CDS-H-paniculata_contig22516:3214..3258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22516 3215..3258 -
1691480940.922023-CDS-H-paniculata_contig22516:3214..32581691480940.922023-CDS-H-paniculata_contig22516:3214..3258Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22516 3215..3258 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22516.5994.1

>prot_H-paniculata_contig22516.5994.1 ID=prot_H-paniculata_contig22516.5994.1|Name=mRNA_H-paniculata_contig22516.5994.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
MATIKAFFVSLINPHFTLKLEAKKSNQVHTVHGTGSTTAS*
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mRNA from alignment at H-paniculata_contig22516:715..3371-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22516.5994.1 ID=mRNA_H-paniculata_contig22516.5994.1|Name=mRNA_H-paniculata_contig22516.5994.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2657bp|location=Sequence derived from alignment at H-paniculata_contig22516:715..3371- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTCATCGGCAAGCAAGGGTTCCTCCTCTTCGAGCAAAAACACGACCGGG
AAGGCGAAGGGCGCGAACAAATCGCCCTTGAAAAGCCGAAAGAAGGACCG
AAAGCCTACGCTCATGGCGACCATCAAGGCCTTTTTCGTTTCGTTGATTA
ACCCGCAGTGAGTATTAGTAACGGTAGCCCTGTTTAATTATACCGCAAAA
TCATGCTGCATTCGACTTATTTGTTCCGAAATTTGTCCCGCAAAATTATG
TCGGAGTCAAGTGGAGATAGTGATGAAATATTTTTGAAAGGTCATGATAT
TGGGAAATCGAAAATGAGAGGAAACCGATTTATTCGCAAATTAATGACAA
TAATAACTACTGTAGGGCTTAGTGTGCTGTGCGGTACTTGGGTCAGTATA
CTTGAGGTTTAGCGTGCTGCCTCCAAGTTGGTAAATCCCACGGTAAGCGA
AATGGTAAGGGCCTTTCGTGGTGGCGCACATGGTTGCAGCACTTGAGAGA
CGGTTATTTGGCGCGAGCCTTACGCATGGCTGTATAAAGGTCTCAATCGA
TGTAAGAATTTCTTCGTCCTTCCCTCACAACGCTCACGAGGTATGTAAAC
AGAGGTTGCATATGCCGGGGTGGAAAGGAAAGAATTTCTTCGTCTTTTTC
GTCAATAGGAATGTTGGCATGGAGGGGGGCGAGTGTGGAGGCGTTTTTAT
ATTTTGCAGGTCGTGGTTGTTAAATTATTGGTCACGCGTCCTCGGGAGGA
TGGGGGATCCTCATCTCTTCCATGCCGAAGTTGTTGAACCATTGACCATA
CATGTAATGTAATCCTCGGGAGGACGGAGTCTTGTCCCTATCTAAGCAAT
TTCCGATAGTGGCCAATTGCTCTCTCCTACGTTGCTAAATATGTCTCGAA
AAGTTTTTCAACGATAGTTACCCCAAACCTTGCCTTTTTGAAGTCAATTT
ATGCCTTGTAAAACCGCTGACTCTCTTTTTTTTTTTTTGCGATCCCAGTT
TTCGAAGGTCTCTACTCTCTGTAGCTTCCTTCGATTTTGCCAATTCACTC
ATACAAATTTGCTCTCATTTTTTTATGGTAGGAGGCGACATTTCAGCAGC
GTCTTTATAGCAAATTTCTCAAGGGGGTCCAAACTTGAGCATGAATTTCT
CGACTATGTCATGTGTGCTGTGGTCGTCAGTTCGTTGAGCCCTCGCAGTG
CACCTTCGTGTACACAGACAGACAGGCATGCTGTGTGTCATTCTCCAGCG
ACAGAGTGTCGATTATATTTTGCCCCGCCTTGCCCCTACATGTATTTTTA
ATCTCTTCTGTCCCCATTGTCCTCCTCGTGCTTGTTACGTTTCGATTGCA
TGATTGGAAATTGATTAAACTTGCTCTCTTATGCTCTGCGAACGATAGCT
TCACCTTGAAGCTGGAAGCGAAAAAGAGCAACCAGGTGCATACCGTGCAC
GGGACGGGGTCGACAACGGCGAGTTAGATGATTGGTTCATTTTCTCAAGT
ACACTATTGAAGTGGTGGTTGAAGAGGGGTACACTGTTGATACAACGGTG
AACACCCCCACTAAATTTAAATGTCTAACGTGCGGGGAGGCGCACTGGTA
TCATACCCTGTCTTCTTTTTAGTGCTTACAGTAAGTATGCTGTGCGGCAC
CGTCTCTCGTACGTTCGACGCTATTTAGAGACACTCTGGACTAGTCTACC
CGTAATACAACACAGGGATCCTCGTTTTGATTGAGGGGGCCGCTTTCGCC
CACTTTATTGGAACACACGTGGAGGCAACCTTTTTCCTGTGCGTTTGACG
TTTTTAGCGGACACATCCTGGTTCGTGTTCAAGGTGGCGTTTATTTTTTG
GGGGGAGAGCAGCTAAATATTTTCCCGTATGGTGCCGGAAGGGCCTATCA
ACGCCGGGTCAGCACTTACGCCCCTTCGTGTTTTGTACTTGCCATGCCGT
TAAGGGTGTAAACGATTGGAACCGGCTGATGGTTTCCTGAAGCAAATACC
AAGAGTCATGTGTTGGCGAATAGAGCATGACCTTTCATCACGCCTGTAGG
GGGATGGAAAAGGGATTCAGATAGAACGCGGTGTTGCTTTTTTGTGTCTC
TATTTCGGGGGCATTGAAGAGTCGCTGAAGTCGCGCGGGTTGATTCTGTT
GTGACCAGCTGCCGAGAGAACACGCTCACATTTTGAACGAAGGTACGTGC
GTCATCGTAAATAAGTCGCCGATCGCCTTCAAGTATTGTCGTACGTAACA
GGAGTGAGTGTTACTTATTTCCAATCGTCGAGATGCGCCAGAGTAGAGCG
GTTTGATAATGATATGATCTGTCATATGTCATATGGGAGATTATACGTCA
TGTGCGTGTCGTCAGTGTGCTTGTCGGGTTGATGGCAGTCAGTGCGCAAA
CAGATAGGATGGGGATAGAGAACAATACCCGTTTTGAAAGTAACAATGTT
TTCGTTGGAATATATATATTTTTAAGTCTGACCAAACTCCGCGGAGCCGG
GTGAAAAGTGAAAGCTAGGAGTCGCGAGTACGCGCACGTGTGCTCAACAC
AACGTTTTGTAGAAACGTTCAGCGCACTTGTCATCCATTAGAAAATGATC
AGAAGAAGCTAGCCCCAACAAGTAAGTGACACATCATTTCATTTCCGCCA
AAATGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig22516:715..3371-

>mRNA_H-paniculata_contig22516.5994.1 ID=mRNA_H-paniculata_contig22516.5994.1|Name=mRNA_H-paniculata_contig22516.5994.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig22516:715..3371- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACCATCAAGGCCTTTTTCGTTTCGTTGATTAACCCGCAATGGCG
ACCATCAAGGCCTTTTTCGTTTCGTTGATTAACCCGCACTTCACCTTGAA
GCTGGAAGCGAAAAAGAGCAACCAGGTGCATACCGTGCACGGGACGGGGT
CGACAACGGCGAGTTAGCTTCACCTTGAAGCTGGAAGCGAAAAAGAGCAA
CCAGGTGCATACCGTGCACGGGACGGGGTCGACAACGGCGAGTTAG
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