mRNA_H-paniculata_contig22511.5993.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22511.5993.1
Unique NamemRNA_H-paniculata_contig22511.5993.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22511.5993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22511contigH-paniculata_contig22511:3135..3374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size214
Cds size111
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22511.5993.1prot_H-paniculata_contig22511.5993.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22511 3211..3347 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.357162-UTR-H-paniculata_contig22511:3134..32101622929625.357162-UTR-H-paniculata_contig22511:3134..3210Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22511 3135..3210 +
1691480940.8536415-UTR-H-paniculata_contig22511:3134..32101691480940.8536415-UTR-H-paniculata_contig22511:3134..3210Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22511 3135..3210 +
1622929625.4182644-UTR-H-paniculata_contig22511:3347..33741622929625.4182644-UTR-H-paniculata_contig22511:3347..3374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22511 3348..3374 +
1691480940.894773-UTR-H-paniculata_contig22511:3347..33741691480940.894773-UTR-H-paniculata_contig22511:3347..3374Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22511 3348..3374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.3772173-CDS-H-paniculata_contig22511:3210..33141622929625.3772173-CDS-H-paniculata_contig22511:3210..3314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22511 3211..3314 +
1691480940.863908-CDS-H-paniculata_contig22511:3210..33141691480940.863908-CDS-H-paniculata_contig22511:3210..3314Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22511 3211..3314 +
1622929625.3997345-CDS-H-paniculata_contig22511:3340..33471622929625.3997345-CDS-H-paniculata_contig22511:3340..3347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22511 3341..3347 +
1691480940.8757846-CDS-H-paniculata_contig22511:3340..33471691480940.8757846-CDS-H-paniculata_contig22511:3340..3347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22511 3341..3347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22511.5993.1

>prot_H-paniculata_contig22511.5993.1 ID=prot_H-paniculata_contig22511.5993.1|Name=mRNA_H-paniculata_contig22511.5993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
MGRKGGAGAGGLSSTRGRRHINRCHAVFACEILGRQ*
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mRNA from alignment at H-paniculata_contig22511:3135..3374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22511.5993.1 ID=mRNA_H-paniculata_contig22511.5993.1|Name=mRNA_H-paniculata_contig22511.5993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig22511:3135..3374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGGCTACCGCCGACCGATCCTGCGGGGTGTCCAGGGTCACCAGGTCTTA
GGTGGAGATAGCTCCTTCGACCGTGAATGGGGCGTAAAGGTGGTGCTGGT
GCTGGTGGTCTATCTAGCACGAGAGGCCGGAGGCACATAAATCGGTGTCA
CGCTGTATTTGCGTGTGAAATCCTAGGAAGGCAATGACTGTTGAAATCCT
AGGAAGGCAATGACTGTTGTATTATTCGAGTCATGTAAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig22511:3135..3374+

>mRNA_H-paniculata_contig22511.5993.1 ID=mRNA_H-paniculata_contig22511.5993.1|Name=mRNA_H-paniculata_contig22511.5993.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig22511:3135..3374+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCGTAAAGGTGGTGCTGGTGCTGGTGGTCTATCTAGCACGAGAGG
CCGGAGGCACATAAATCGGTGTCACGCTGTATTTGCGTGTGAAATCCTAG
GAAGATGGGGCGTAAAGGTGGTGCTGGTGCTGGTGGTCTATCTAGCACGA
GAGGCCGGAGGCACATAAATCGGTGTCACGCTGTATTTGCGTGTGAAATC
CTAGGAAGGCAATGAGCAATGA
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