mRNA_H-paniculata_contig22507.5991.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22507.5991.1
Unique NamemRNA_H-paniculata_contig22507.5991.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22507.5991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22507contigH-paniculata_contig22507:3659..4024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.248378-CDS-H-paniculata_contig22507:3658..37921622929625.248378-CDS-H-paniculata_contig22507:3658..3792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22507 3659..3792 -
1691480940.822574-CDS-H-paniculata_contig22507:3658..37921691480940.822574-CDS-H-paniculata_contig22507:3658..3792Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22507 3659..3792 -
1622929625.2658873-CDS-H-paniculata_contig22507:3903..40241622929625.2658873-CDS-H-paniculata_contig22507:3903..4024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22507 3904..4024 -
1691480940.832812-CDS-H-paniculata_contig22507:3903..40241691480940.832812-CDS-H-paniculata_contig22507:3903..4024Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22507 3904..4024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22507.5991.1prot_H-paniculata_contig22507.5991.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22507 3659..4024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22507.5991.1

>prot_H-paniculata_contig22507.5991.1 ID=prot_H-paniculata_contig22507.5991.1|Name=mRNA_H-paniculata_contig22507.5991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
PKCFICRSKDHFQRDCPNVYCRRCGKRGHDLNACPQLANEGKEEVLSLAS
EELEYREVGGMEIWICDNGATKHMTHNSDFLFNY*
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mRNA from alignment at H-paniculata_contig22507:3659..4024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22507.5991.1 ID=mRNA_H-paniculata_contig22507.5991.1|Name=mRNA_H-paniculata_contig22507.5991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at H-paniculata_contig22507:3659..4024- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAAGTGCTTCATCTGCCGCTCCAAGGATCACTTTCAACGGGACTGCCC
CAACGTATACTGTCGGCGATGTGGCAAGCGTGGTCACGACTTGAACGCGT
GCCCCCAGCTCGCCAATGAAGGTGCTTGTTTGGCTGAAGCTGAAATTGAG
ATTGAACTTGAACAGGCGCTCAGGGTTGATCTGGGCGAAGACGACTTCAT
CGCGGCATACATCACGTCGACTTCCACCACAGGCAAGGAAGAGGTTTTGT
CTTTGGCCTCTGAGGAGTTAGAATATCGTGAGGTGGGGGGGATGGAGATC
TGGATATGTGATAATGGTGCAACAAAACACATGACCCATAATTCAGATTT
TCTTTTTAATTACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig22507:3659..4024-

>mRNA_H-paniculata_contig22507.5991.1 ID=mRNA_H-paniculata_contig22507.5991.1|Name=mRNA_H-paniculata_contig22507.5991.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig22507:3659..4024- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAAAGTGCTTCATCTGCCGCTCCAAGGATCACTTTCAACGGGACTGCCC
CAACGTATACTGTCGGCGATGTGGCAAGCGTGGTCACGACTTGAACGCGT
GCCCCCAGCTCGCCAATGAAGCCAAAGTGCTTCATCTGCCGCTCCAAGGA
TCACTTTCAACGGGACTGCCCCAACGTATACTGTCGGCGATGTGGCAAGC
GTGGTCACGACTTGAACGCGTGCCCCCAGCTCGCCAATGAAGGCAAGGAA
GAGGTTTTGTCTTTGGCCTCTGAGGAGTTAGAATATCGTGAGGTGGGGGG
GATGGAGATCTGGATATGTGATAATGGTGCAACAAAACACATGACCCATA
ATTCAGATTTTCTTTTTAATTACTAGGCAAGGAAGAGGTTTTGTCTTTGG
CCTCTGAGGAGTTAGAATATCGTGAGGTGGGGGGGATGGAGATCTGGATA
TGTGATAATGGTGCAACAAAACACATGACCCATAATTCAGATTTTCTTTT
TAATTACTAG
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