mRNA_H-paniculata_contig22501.5990.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig22501.5990.1
Unique Name	mRNA_H-paniculata_contig22501.5990.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

[Close]

BLAST of mRNA_H-paniculata_contig22501.5990.1 vs. uniprot
Match: A0A6H5JPW7_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPW7_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.240e-22
Identity = 54/92 (58.70%), Postives = 64/92 (69.57%), Query Frame = 2

Query:    2 RDYRMDIVVPAGELRDTPINAYRVKGLLIDVTHADPQSTGQLERGSATIDGSAAATSQARKSAYYSRRGNVSFDERCFELPPLAVESFGRSG 277
            R+  MDIV+  G L +     YR KG+L+DVTHADPQ+   L  GSAT DG AA  S+ARK  +Y+R GNVSFDER F+L  LAVESFGR G
Sbjct:  139 RNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGNVSFDERSFKLTTLAVESFGRLG 230

[Close]

BLAST of mRNA_H-paniculata_contig22501.5990.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.740e-22
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 2

Query:    2 RDYRMDIVVPAGELRDTPINAYRVKGLLIDVTHADPQSTGQLERGSATIDGSAAATSQARKSAYYSRRGNVSFDERCFELPPLAVESFGRSG 277
            R+  MDIV+  G LR+   + YR KG+L+DVTHADPQ+   L  GSAT DG+AA  S+ARK  +Y+R G+VSFDER F+L  LAVESFGR G
Sbjct: 2006 RNLSMDIVIRPGALRNAASSVYRNKGILLDVTHADPQAQVHLRNGSATSDGTAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLG 2097

[Close]

BLAST of mRNA_H-paniculata_contig22501.5990.1 vs. uniprot
Match: A0A6H5KAD2_9PHAE (Uncharacterized protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD2_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.220e-21
Identity = 52/92 (56.52%), Postives = 63/92 (68.48%), Query Frame = 2

Query:    2 RDYRMDIVVPAGELRDTPINAYRVKGLLIDVTHADPQSTGQLERGSATIDGSAAATSQARKSAYYSRRGNVSFDERCFELPPLAVESFGRSG 277
            R+  MDIV+  G L +     Y  KG+L+DVTHADPQ+   L  GSAT DG AA  S+ARK  +Y+R G+VSFDER F+L  LAVESFGR G
Sbjct:   27 RNLSMDIVIRPGALTNASSPGYHNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERRFKLTTLAVESFGRLG 118

[Close]

BLAST of mRNA_H-paniculata_contig22501.5990.1 vs. uniprot
Match: A0A6H5K198_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K198_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.800e-21
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 2

Query:    2 RDYRMDIVVPAGELRDTPINAYRVKGLLIDVTHADPQSTGQLERGSATIDGSAAATSQARKSAYYSRRGNVSFDERCFELPPLAVESFGRSG 277
            R+  MDIV+  G L +     YR KG+L+DVTHADPQ+   L  GSAT DG AA  S+ARK  +Y+R G+VSFDER F+L  LAVESFGR G
Sbjct:  162 RNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLG 253

[Close]

BLAST of mRNA_H-paniculata_contig22501.5990.1 vs. uniprot
Match: A0A6H5JUN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN7_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.310e-21
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 2

Query:    2 RDYRMDIVVPAGELRDTPINAYRVKGLLIDVTHADPQSTGQLERGSATIDGSAAATSQARKSAYYSRRGNVSFDERCFELPPLAVESFGRSG 277
            R+  MDIV+  G L +     YR KG+L+DVTHADPQ+   L  GSAT DG AA  S+ARK  +Y+R G+VSFDER F+L  LAVESFGR G
Sbjct:  148 RNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLG 239

[Close]

BLAST of mRNA_H-paniculata_contig22501.5990.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 7.220e-21
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 2

Query:    2 RDYRMDIVVPAGELRDTPINAYRVKGLLIDVTHADPQSTGQLERGSATIDGSAAATSQARKSAYYSRRGNVSFDERCFELPPLAVESFGRSG 277
            R+  MDIV+  G L +     YR KG+L+DVTHADPQ+   L  GSAT DG AA  S+ARK  +Y+R G+VSFDER F+L  LAVESFGR G
Sbjct:  216 RNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLG 307

[Close]

BLAST of mRNA_H-paniculata_contig22501.5990.1 vs. uniprot
Match: A0A6H5KEX1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX1_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 8.480e-21
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 2

Query:    2 RDYRMDIVVPAGELRDTPINAYRVKGLLIDVTHADPQSTGQLERGSATIDGSAAATSQARKSAYYSRRGNVSFDERCFELPPLAVESFGRSG 277
            R+  MDIV+  G L +     YR KG+L+DVTHADPQ+   L  GSAT DG AA  S+ARK  +Y+R G+VSFDER F+L  LAVESFGR G
Sbjct:  139 RNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLG 230

[Close]

BLAST of mRNA_H-paniculata_contig22501.5990.1 vs. uniprot
Match: A0A6H5L8G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 8.680e-21
Identity = 49/88 (55.68%), Postives = 62/88 (70.45%), Query Frame = 2

Query:   14 MDIVVPAGELRDTPINAYRVKGLLIDVTHADPQSTGQLERGSATIDGSAAATSQARKSAYYSRRGNVSFDERCFELPPLAVESFGRSG 277
            MDIV+  G L      AYR KG+L+DVTHADPQ+   L  G AT DG+AA  S+ARK  +Y+R G+VSFDER ++L  LA++SFGR G
Sbjct:    1 MDIVIRPGALASASSPAYRHKGILLDVTHADPQAQVHLRNGGATSDGTAAQASEARKRQHYARPGHVSFDERSYKLTTLALKSFGRLG 88

[Close]

BLAST of mRNA_H-paniculata_contig22501.5990.1 vs. uniprot
Match: A0A6H5JS53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS53_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.120e-20
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 2

Query:    2 RDYRMDIVVPAGELRDTPINAYRVKGLLIDVTHADPQSTGQLERGSATIDGSAAATSQARKSAYYSRRGNVSFDERCFELPPLAVESFGRSG 277
            R+  MDIV+  G L +     YR KG+L+DVTHADPQ+   L  GSAT DG AA  S+ARK  +Y+R G+VSFDER F+L  LAVESFGR G
Sbjct:  268 RNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLG 359

[Close]

BLAST of mRNA_H-paniculata_contig22501.5990.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.390e-20
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 2

Query:    2 RDYRMDIVVPAGELRDTPINAYRVKGLLIDVTHADPQSTGQLERGSATIDGSAAATSQARKSAYYSRRGNVSFDERCFELPPLAVESFGRSG 277
            R+  MDIV+  G L +     YR KG+L+DVTHADPQ+   L  GSAT DG AA  S+ARK  +Y+R G+VSFDER F+L  LAVESFGR G
Sbjct:  305 RNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARKRQHYARPGHVSFDERSFKLTTLAVESFGRLG 396

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig22501.5990.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig22501.5990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JPW7_9PHAE	5.240e-22	58.70	Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JH58_9PHAE	6.740e-22	58.70	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KAD2_9PHAE	3.220e-21	56.52	Uncharacterized protein n=7 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K198_9PHAE	3.800e-21	57.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUN7_9PHAE	5.310e-21	57.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDZ4_9PHAE	7.220e-21	57.61	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KEX1_9PHAE	8.480e-21	57.61	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5L8G2_9PHAE	8.680e-21	55.68	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JS53_9PHAE	1.120e-20	57.61	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LLI3_9PHAE	1.390e-20	57.61	Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig22501	contig	H-paniculata_contig22501:1833..2590 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	2
Model size	737
Cds size	504
Stop	1
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig22501.5990.1	prot_H-paniculata_contig22501.5990.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig22501 2065..2590 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929625.1612604-UTR-H-paniculata_contig22501:1832..2064	1622929625.1612604-UTR-H-paniculata_contig22501:1832..2064	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig22501 1833..2064 -
1691480940.7977288-UTR-H-paniculata_contig22501:1832..2064	1691480940.7977288-UTR-H-paniculata_contig22501:1832..2064	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig22501 1833..2064 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929625.1826086-CDS-H-paniculata_contig22501:2064..2289	1622929625.1826086-CDS-H-paniculata_contig22501:2064..2289	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig22501 2065..2289 -
1691480940.806024-CDS-H-paniculata_contig22501:2064..2289	1691480940.806024-CDS-H-paniculata_contig22501:2064..2289	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig22501 2065..2289 -
1622929625.2002048-CDS-H-paniculata_contig22501:2311..2590	1622929625.2002048-CDS-H-paniculata_contig22501:2311..2590	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig22501 2312..2590 -
1691480940.8139784-CDS-H-paniculata_contig22501:2311..2590	1691480940.8139784-CDS-H-paniculata_contig22501:2311..2590	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig22501 2312..2590 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig22501:1833..2590-
coding sequence from alignment at H-paniculata_contig22501:1833..2590-

protein sequence of mRNA_H-paniculata_contig22501.5990.1

>prot_H-paniculata_contig22501.5990.1 ID=prot_H-paniculata_contig22501.5990.1|Name=mRNA_H-paniculata_contig22501.5990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
PGLPDGHRRPGRRAPRYSHQRLPRQGSPDRRHARRSSVDGATRARERYHR
RLGRRDFPGAQKRLLLSKRKRVLRRALFRTSPPRGGKLWAFGKQVASSVV
GEQEGGDISQKGVLLLLIERMKEVIWVAIQVAISRRVQICRLALRGRQEA
AEGAFNPRSWGWSLAAP*

mRNA from alignment at H-paniculata_contig22501:1833..2590-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig22501.5990.1 ID=mRNA_H-paniculata_contig22501.5990.1|Name=mRNA_H-paniculata_contig22501.5990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=758bp|location=Sequence derived from alignment at H-paniculata_contig22501:1833..2590- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGGACTACCGGATGGACATCGTCGTCCCGGCAGGAGAGCTCCGAGATA
CTCCCATCAACGCCTACCGCGTCAAGGGTCTCCTGATCGACGTCACGCAC
GCAGATCCTCAGTCGACGGGGCAACTCGAGCGCGGGAGCGCTACCATCGA
CGGCTCGGCCGCCGCGACTTCCCAGGCGCGCAAAAGCGCTTACTACTCTC
GAAGAGGAAACGTGTCCTTCGACGAGCGTTGTTTCGAACTTCCCCCCCTC
GCGGTGGAAAGCTTTGGGCGTTCGGGAAAGTGGGGAGAGGAGCTGCTCGA
GCAGGTGGCGTCCAGCGTGGTGGGGGAACAGGAGGGTGGCGACATTTCGC
AGAAAGGAGTACTGCTATTACTAATAGAGCGGATGAAAGAAGTCATTTGG
GTGGCTATACAGGTGGCTATCTCGAGACGGGTGCAGATATGCAGACTGGC
TCTGCGGGGAAGGCAAGAAGCAGCAGAAGGGGCCTTCAATCCTCGATCGT
GGGGATGGAGTTTAGCGGCGCCGTAGTATTCCATTACGGTGTTTTATCAT
TTTTCGATTTTATATGTGGACTTTTGTTTTATGTCTTAATTTTTCAAAAA
AGAAAATGGTTATCGTTAGTTAATTGTGTGGGTATTGTGCAATGAAACCC
TATTTTTGGTTTAACAGTTTGCTTAATGTATTTTTCTCTTGCAGGTATAC
CACCATTTGGGGGATTTTTTGCTAAAGTTTTTGTTTTTATTGCTTTAATT
ACTAAATC

Coding sequence (CDS) from alignment at H-paniculata_contig22501:1833..2590-

>mRNA_H-paniculata_contig22501.5990.1 ID=mRNA_H-paniculata_contig22501.5990.1|Name=mRNA_H-paniculata_contig22501.5990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig22501:1833..2590- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGGGACTACCGGATGGACATCGTCGTCCCGGCAGGAGAGCTCCGAGATA
CTCCCATCAACGCCTACCGCGTCAAGGGTCTCCTGATCGACGTCACGCAC
GCAGATCCTCAGTCGACGGGGCAACTCGAGCGCGGGAGCGCTACCATCGA
CGGCTCGGCCGCCGCGACTTCCCAGGCGCGCAAAAGCGCTTACTACTCTC
GAAGAGGAAACGTGTCCTTCGACGAGCGTTGTTTCGAACTTCCCCCCCTC
GCGGTGGAAAGCTTTGGGCGTTCGGGAAACCGGGACTACCGGATGGACAT
CGTCGTCCCGGCAGGAGAGCTCCGAGATACTCCCATCAACGCCTACCGCG
TCAAGGGTCTCCTGATCGACGTCACGCACGCAGATCCTCAGTCGACGGGG
CAACTCGAGCGCGGGAGCGCTACCATCGACGGCTCGGCCGCCGCGACTTC
CCAGGCGCGCAAAAGCGCTTACTACTCTCGAAGAGGAAACGTGTCCTTCG
ACGAGCGTTGTTTCGAACTTCCCCCCCTCGCGGTGGAAAGCTTTGGGCGT
TCGGGAAACAGGTGGCGTCCAGCGTGGTGGGGGAACAGGAGGGTGGCGAC
ATTTCGCAGAAAGGAGTACTGCTATTACTAATAGAGCGGATGAAAGAAGT
CATTTGGGTGGCTATACAGGTGGCTATCTCGAGACGGGTGCAGATATGCA
GACTGGCTCTGCGGGGAAGGCAAGAAGCAGCAGAAGGGGCCTTCAATCCT
CGATCGTGGGGATGGAGTTTAGCGGCGCCGTAGCAGGTGGCGTCCAGCGT
GGTGGGGGAACAGGAGGGTGGCGACATTTCGCAGAAAGGAGTACTGCTAT
TACTAATAGAGCGGATGAAAGAAGTCATTTGGGTGGCTATACAGGTGGCT
ATCTCGAGACGGGTGCAGATATGCAGACTGGCTCTGCGGGGAAGGCAAGA
AGCAGCAGAAGGGGCCTTCAATCCTCGATCGTGGGGATGGAGTTTAGCGG
CGCCGTAG