mRNA_H-paniculata_contig2248.5984.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2248.5984.1
Unique NamemRNA_H-paniculata_contig2248.5984.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2248.5984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2248contigH-paniculata_contig2248:11679..12022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size333
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.4831548-UTR-H-paniculata_contig2248:11678..116891622929624.4831548-UTR-H-paniculata_contig2248:11678..11689Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2248 11679..11689 +
1691480940.450118-UTR-H-paniculata_contig2248:11678..116891691480940.450118-UTR-H-paniculata_contig2248:11678..11689Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2248 11679..11689 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.5001485-CDS-H-paniculata_contig2248:11689..120221622929624.5001485-CDS-H-paniculata_contig2248:11689..12022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2248 11690..12022 +
1691480940.4615033-CDS-H-paniculata_contig2248:11689..120221691480940.4615033-CDS-H-paniculata_contig2248:11689..12022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2248 11690..12022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2248.5984.1prot_H-paniculata_contig2248.5984.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2248 11690..12022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2248.5984.1

>prot_H-paniculata_contig2248.5984.1 ID=prot_H-paniculata_contig2248.5984.1|Name=mRNA_H-paniculata_contig2248.5984.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MALHLDTPKGSDNNLHSSLYANHCTQEEPHQLCRGAYPVQQMYRSSSSGR
EGMALLSSAARPPPVSQASKLISSNSGSYETTSLGKTERGQSRSARARGA
AGMGVWEHNC*
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mRNA from alignment at H-paniculata_contig2248:11679..12022+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2248.5984.1 ID=mRNA_H-paniculata_contig2248.5984.1|Name=mRNA_H-paniculata_contig2248.5984.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=344bp|location=Sequence derived from alignment at H-paniculata_contig2248:11679..12022+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACCTCGCGCATGGCACTCCACTTGGATACCCCTAAGGGATCTGACAAC
AACCTGCACTCCAGTCTGTATGCCAATCACTGCACGCAGGAAGAACCTCA
CCAACTATGCCGTGGAGCATATCCTGTTCAACAGATGTACCGCTCATCGA
GCTCCGGCAGAGAGGGAATGGCCCTGCTCTCTTCTGCCGCAAGACCTCCA
CCGGTCTCACAGGCAAGTAAATTAATCTCTTCAAACTCGGGCTCGTATGA
GACCACCAGCTTAGGCAAAACAGAGCGGGGCCAGTCCCGCTCTGCCAGAG
CTCGAGGAGCGGCTGGCATGGGGGTATGGGAACACAACTGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2248:11679..12022+

>mRNA_H-paniculata_contig2248.5984.1 ID=mRNA_H-paniculata_contig2248.5984.1|Name=mRNA_H-paniculata_contig2248.5984.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig2248:11679..12022+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCACTCCACTTGGATACCCCTAAGGGATCTGACAACAACCTGCACTC
CAGTCTGTATGCCAATCACTGCACGCAGGAAGAACCTCACCAACTATGCC
GTGGAGCATATCCTGTTCAACAGATGTACCGCTCATCGAGCTCCGGCAGA
GAGGGAATGGCCCTGCTCTCTTCTGCCGCAAGACCTCCACCGGTCTCACA
GGCAAGTAAATTAATCTCTTCAAACTCGGGCTCGTATGAGACCACCAGCT
TAGGCAAAACAGAGCGGGGCCAGTCCCGCTCTGCCAGAGCTCGAGGAGCG
GCTGGCATGGGGGTATGGGAACACAACTGTTGAATGGCACTCCACTTGGA
TACCCCTAAGGGATCTGACAACAACCTGCACTCCAGTCTGTATGCCAATC
ACTGCACGCAGGAAGAACCTCACCAACTATGCCGTGGAGCATATCCTGTT
CAACAGATGTACCGCTCATCGAGCTCCGGCAGAGAGGGAATGGCCCTGCT
CTCTTCTGCCGCAAGACCTCCACCGGTCTCACAGGCAAGTAAATTAATCT
CTTCAAACTCGGGCTCGTATGAGACCACCAGCTTAGGCAAAACAGAGCGG
GGCCAGTCCCGCTCTGCCAGAGCTCGAGGAGCGGCTGGCATGGGGGTATG
GGAACACAACTGTTGA
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