prot_H-paniculata_contig22470.5980.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig22470.5980.1
Unique Nameprot_H-paniculata_contig22470.5980.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length362
Homology
BLAST of mRNA_H-paniculata_contig22470.5980.1 vs. uniprot
Match: A0A6H5KTP6_9PHAE (Ig-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP6_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 6.100e-35
Identity = 105/290 (36.21%), Postives = 140/290 (48.28%), Query Frame = 0
Query:   75 ASRR--VHFADELGGSLVSDVRITISWWDHMVFGPRVALGDEGKEFTCMACGHSHSPRKWGGEGAELEKQKHSCRCDNCGSAVVISFAEPAVAVASSRAGSSELLQFIVELNRGVEAVLLFPGVVG--KKRRPVVLYTEDHGESLCWIETGTSAGASNQKPYKLPCSCLLEVVDKSGVSMAAAASHRNGSRQSVVDTYSNCNRWSAELDGPFMTD-GDSGGAASSFASSRWVEGAWEKDGVGRVCVKLKWRPKPTFPVRKATLVEVKTRCSPSVFTRGMLQLRLHNLELD 359
            +SRR  V ++DE GG LV+ VR T  +W+ MV      LGD G    C  C              E         CD CG         P      S +   EL +FI EL+RGVEA L+FPG+ G  KKRRPV+LYTED+GES+CWI+TG +      +PY++    LLEV DKSG           GSR    ++ + C   +  ++G F ++ G+    A                    V + LKW P+PT+  R   LV+V+T C P +FTRGM QL   N +L 
Sbjct:   93 SSRRGTVRWSDECGGELVTQVRTTTDFWEMMV------LGDGG----CCTCXXXXXXXXXXXXXTETV-------CDGCGELR----RRPGGDACCSSSPPGELFRFIAELSRGVEATLVFPGLGGISKKRRPVILYTEDNGESICWIKTGANGSG---EPYRIRSKTLLEVKDKSGA----------GSR---AESVARCGGGAHGVEGAFRSECGEQEEDARGXXXXXXXXXXXXXXXATGVRINLKWLPQPTWSKRTVKLVDVQTAC-PGIFTRGMQQLLSFNSDLQ 344          
BLAST of mRNA_H-paniculata_contig22470.5980.1 vs. uniprot
Match: D8LE00_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE00_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 7.890e-28
Identity = 73/184 (39.67%), Postives = 102/184 (55.43%), Query Frame = 0
Query:  182 ELNRGVEAVLLFPGVVG--KKRRPVVLYTEDHGESLCWIETGTSAGASNQKPYKLPCSCLLEVVDKSGVSMAAAA----SHRNGSRQSVVDTYSNCNRWSAELDGPFMTDGDSGGAASSFASSRWVEGAWEKDGVGRVCVKLKWRPKPTFPVRKATLVEVKTRCSPSVFTRGMLQLRLHNLELD 359
            +L+RGVEA L+FPG  G  KKRRPV+LYTED+GES+CWI+TG +      +PY++ C  LLEV DKSG   +A +    +   G    V   + +   W  + +      G  GG +S + ++    G         V + LKW P+PT+  R   LV+V+T C P +FTRGM QL   N +L 
Sbjct:   14 QLSRGVEATLVFPGFGGISKKRRPVILYTEDNGESICWIKTGANGSG---EPYRIRCKTLLEVRDKSGAGSSAESPATVAGSGGELHEVEGAFGS--EWGEQKEDA----GGVGGTSSGYGTAAAAAG---------VRINLKWLPQPTWSRRTVKLVDVQTAC-PGMFTRGMQQLLSFNTDLQ 178          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22470.5980.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTP6_9PHAE6.100e-3536.21Ig-like domain-containing protein n=1 Tax=Ectocarp... [more]
D8LE00_ECTSI7.890e-2839.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22470contigH-paniculata_contig22470:1098..2183 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22470.5980.1mRNA_H-paniculata_contig22470.5980.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig22470 842..3534 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig22470.5980.1 ID=prot_H-paniculata_contig22470.5980.1|Name=mRNA_H-paniculata_contig22470.5980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=362bp
MFPTMKPSMASIQMGEGLSILEVVQRGFTNKGDSMISAGSYSSWGDADLS
EGTSSCTSAEEDSTRVGQDSTDDMASRRVHFADELGGSLVSDVRITISWW
DHMVFGPRVALGDEGKEFTCMACGHSHSPRKWGGEGAELEKQKHSCRCDN
CGSAVVISFAEPAVAVASSRAGSSELLQFIVELNRGVEAVLLFPGVVGKK
RRPVVLYTEDHGESLCWIETGTSAGASNQKPYKLPCSCLLEVVDKSGVSM
AAAASHRNGSRQSVVDTYSNCNRWSAELDGPFMTDGDSGGAASSFASSRW
VEGAWEKDGVGRVCVKLKWRPKPTFPVRKATLVEVKTRCSPSVFTRGMLQ
LRLHNLELDRA*
back to top