mRNA_H-paniculata_contig22468.5977.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22468.5977.1
Unique NamemRNA_H-paniculata_contig22468.5977.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22468.5977.1 vs. uniprot
Match: D7FNP1_ECTSI (Similar to WD repeat domain 49 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP1_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 5.740e-18
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 TAPVCFRFSKAHGTSKISCMNFDASERRLLTGANDGAVKMWNFSNGK 141
            T  + FRF KAHGTSKISCM FDASERRLLTGANDG VK+WNF+NGK
Sbjct:  211 TGLLAFRFGKAHGTSKISCMAFDASERRLLTGANDGTVKLWNFNNGK 257
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BLAST of mRNA_H-paniculata_contig22468.5977.1 vs. uniprot
Match: A0A6H5LB52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB52_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 2.730e-17
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 TAPVCFRFSKAHGTSKISCMNFDASERRLLTGANDGAVKMWNFSNGK 141
            T  + FRF KAHGTSKISCM FDASERRLLTGANDG VK+WNF++GK
Sbjct:  140 TGLLAFRFGKAHGTSKISCMAFDASERRLLTGANDGTVKLWNFNSGK 186
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BLAST of mRNA_H-paniculata_contig22468.5977.1 vs. uniprot
Match: A0A150GN34_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GN34_GONPE)

HSP 1 Score: 64.7 bits (156), Expect = 6.400e-11
Identity = 27/42 (64.29%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   19 RFSKAHGTSKISCMNFDASERRLLTGANDGAVKMWNFSNGKV 144
            RF++AHG S+I+   FD +ERRLLT ANDGAV+MWNF+NG +
Sbjct:  277 RFTRAHGDSRITAACFDRNERRLLTAANDGAVRMWNFNNGSL 318
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BLAST of mRNA_H-paniculata_contig22468.5977.1 vs. uniprot
Match: UPI00077B0F8E (WD repeat-containing protein on Y chromosome-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077B0F8E)

HSP 1 Score: 64.7 bits (156), Expect = 6.410e-11
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 TAPVCFRFSKAHGTSKISCMNFDASERRLLTGANDGAVKMWNFSNG 138
            T     +FS AHGTS+++ M FD S+RRL+TGA DG VK+WNF+NG
Sbjct:  881 TGEKIIQFSHAHGTSEVTAMRFDPSKRRLITGARDGTVKIWNFNNG 926
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BLAST of mRNA_H-paniculata_contig22468.5977.1 vs. uniprot
Match: A0A8M6Z1K7_DANRE (WD repeat-containing protein on Y chromosome-like isoform X1 n=5 Tax=Danio rerio TaxID=7955 RepID=A0A8M6Z1K7_DANRE)

HSP 1 Score: 63.9 bits (154), Expect = 1.200e-10
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 TAPVCFRFSKAHGTSKISCMNFDASERRLLTGANDGAVKMWNFSNGK 141
            T  + F F  AHG S I+CM FD S RRL+TG  DG +K+WNF+NG+
Sbjct:  599 TGALIFEFGCAHGDSAITCMTFDTSGRRLMTGGRDGLIKLWNFNNGQ 645
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BLAST of mRNA_H-paniculata_contig22468.5977.1 vs. uniprot
Match: UPI0020143E36 (LOW QUALITY PROTEIN: WD repeat-containing protein on Y chromosome n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI0020143E36)

HSP 1 Score: 63.5 bits (153), Expect = 1.640e-10
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 TAPVCFRFSKAHGTSKISCMNFDASERRLLTGANDGAVKMWNFSNGK 141
            T    F F  AHG S I+CM FD+S RRL+TG  DG +KMWNF+NG+
Sbjct:  661 TGAQMFEFGDAHGESAITCMAFDSSGRRLVTGGRDGCLKMWNFNNGQ 707
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BLAST of mRNA_H-paniculata_contig22468.5977.1 vs. uniprot
Match: UPI00109B869B (WD repeat-containing protein 49 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109B869B)

HSP 1 Score: 62.8 bits (151), Expect = 3.060e-10
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   19 RFSKAHGTSKISCMNFDASERRLLTGANDGAVKMWNFSNG 138
            +FS AHG S+I+ M FD S+RRL+TGA DG VK+WNF+NG
Sbjct:  554 QFSNAHGDSEITAMTFDQSKRRLITGARDGTVKIWNFNNG 593
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BLAST of mRNA_H-paniculata_contig22468.5977.1 vs. uniprot
Match: A0A3N0XVP3_ANAGA (WD repeat-containing protein 49 n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0XVP3_ANAGA)

HSP 1 Score: 62.8 bits (151), Expect = 3.060e-10
Identity = 27/47 (57.45%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 TAPVCFRFSKAHGTSKISCMNFDASERRLLTGANDGAVKMWNFSNGK 141
            T    F F  AHG S I+CM FD+S RRL+TG  DG +KMWNF+NG+
Sbjct:  940 TGAQMFEFGGAHGESAITCMVFDSSGRRLVTGGRDGCLKMWNFNNGQ 986
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BLAST of mRNA_H-paniculata_contig22468.5977.1 vs. uniprot
Match: V9KQE0_CALMI (WD repeat-containing protein 49-like protein (Fragment) n=1 Tax=Callorhinchus milii TaxID=7868 RepID=V9KQE0_CALMI)

HSP 1 Score: 62.4 bits (150), Expect = 4.170e-10
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 TAPVCFRFSKAHGTSKISCMNFDASERRLLTGANDGAVKMWNFSNGK 141
            T  + F FS+AH  S ISCM FD S RRL+TG  DG +K+WN++NG+
Sbjct:   18 TGSLMFEFSEAHKDSAISCMTFDDSGRRLITGGRDGCLKIWNYNNGQ 64
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BLAST of mRNA_H-paniculata_contig22468.5977.1 vs. uniprot
Match: A0A4W3K6E2_CALMI (WD40 repeat domain 95 n=1 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3K6E2_CALMI)

HSP 1 Score: 62.4 bits (150), Expect = 4.170e-10
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 TAPVCFRFSKAHGTSKISCMNFDASERRLLTGANDGAVKMWNFSNGK 141
            T  + F FS+AH  S ISCM FD S RRL+TG  DG +K+WN++NG+
Sbjct:  169 TGSLMFEFSEAHKDSAISCMTFDDSGRRLITGGRDGCLKIWNYNNGQ 215
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22468.5977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNP1_ECTSI5.740e-1880.85Similar to WD repeat domain 49 n=1 Tax=Ectocarpus ... [more]
A0A6H5LB52_9PHAE2.730e-1778.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A150GN34_GONPE6.400e-1164.29Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
UPI00077B0F8E6.410e-1158.70WD repeat-containing protein on Y chromosome-like ... [more]
A0A8M6Z1K7_DANRE1.200e-1055.32WD repeat-containing protein on Y chromosome-like ... [more]
UPI0020143E361.640e-1057.45LOW QUALITY PROTEIN: WD repeat-containing protein ... [more]
UPI00109B869B3.060e-1065.00WD repeat-containing protein 49 n=1 Tax=Exaiptasia... [more]
A0A3N0XVP3_ANAGA3.060e-1057.45WD repeat-containing protein 49 n=1 Tax=Anabariliu... [more]
V9KQE0_CALMI4.170e-1055.32WD repeat-containing protein 49-like protein (Frag... [more]
A0A4W3K6E2_CALMI4.170e-1055.32WD40 repeat domain 95 n=1 Tax=Callorhinchus milii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22468contigH-paniculata_contig22468:936..1079 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog2880.D7FNP1
Preferred nameWDR64
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929623.908148-CDS-H-paniculata_contig22468:935..10791622929623.908148-CDS-H-paniculata_contig22468:935..1079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22468 936..1079 -
1691480940.2279923-CDS-H-paniculata_contig22468:935..10791691480940.2279923-CDS-H-paniculata_contig22468:935..1079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22468 936..1079 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22468.5977.1prot_H-paniculata_contig22468.5977.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22468 936..1079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22468.5977.1

>prot_H-paniculata_contig22468.5977.1 ID=prot_H-paniculata_contig22468.5977.1|Name=mRNA_H-paniculata_contig22468.5977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
TAPVCFRFSKAHGTSKISCMNFDASERRLLTGANDGAVKMWNFSNGKV
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mRNA from alignment at H-paniculata_contig22468:936..1079-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22468.5977.1 ID=mRNA_H-paniculata_contig22468.5977.1|Name=mRNA_H-paniculata_contig22468.5977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at H-paniculata_contig22468:936..1079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGCTCCTGTTTGTTTTAGGTTTTCAAAGGCACACGGGACGTCGAAGAT
AAGCTGCATGAACTTCGACGCTTCGGAGCGGAGGCTCTTGACCGGTGCCA
ACGACGGTGCCGTAAAGATGTGGAACTTCAGCAACGGGAAGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig22468:936..1079-

>mRNA_H-paniculata_contig22468.5977.1 ID=mRNA_H-paniculata_contig22468.5977.1|Name=mRNA_H-paniculata_contig22468.5977.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig22468:936..1079- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGCTCCTGTTTGTTTTAGGTTTTCAAAGGCACACGGGACGTCGAAGAT
AAGCTGCATGAACTTCGACGCTTCGGAGCGGAGGCTCTTGACCGGTGCCA
ACGACGGTGCCGTAAAGATGTGGAACTTCAGCAACGGGAAGGTAACTGCT
CCTGTTTGTTTTAGGTTTTCAAAGGCACACGGGACGTCGAAGATAAGCTG
CATGAACTTCGACGCTTCGGAGCGGAGGCTCTTGACCGGTGCCAACGACG
GTGCCGTAAAGATGTGGAACTTCAGCAACGGGAAGGTA
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