prot_H-paniculata_contig2246.5976.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2246.5976.1
Unique Nameprot_H-paniculata_contig2246.5976.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length273
Homology
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE)

HSP 1 Score: 343 bits (879), Expect = 2.450e-114
Identity = 187/284 (65.85%), Postives = 211/284 (74.30%), Query Frame = 0
Query:    1 MGDSRDTPSSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEHDVGFVDFRDPESATIAKDRFKGHELRGHIIAVCYARAGRKRARTDRNDPRENSSG---------------HHRTPSGNL-------LQGVGASYIGLGGVPGMGGLHHPAHAPAYGMASPRLIQ----MSAMGLPLRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPK 258
            MGD RD PS  LFVSDLPSDITEKELE+LFAGCHGF+SCRVRKDK+EHDVGFVDF D ESATIAK+RFKGH  RGH IAVCYAR  RKR R +R+D R+   G                  TPSG +       L  V   Y+G+G + G+GG+H    A AYGMA+PRL+Q    MSAMGLPL LPSDAHHTLYVEG+P D SERE+AHIFRPFPGYISLRLRAKGGR+  L   S + +AICFVEFES+YHATIAKMG A+YRLDK+DRN+ VL IEYAK K
Sbjct:    1 MGD-RDIPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPIAVCYARPARKRHRPERSDARDMDGGGDSRNYQSMQXXXXXXXXTPSGGVGGGLPTNLSSVNTGYLGMG-IGGIGGIHA---AQAYGMATPRLMQASTAMSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRS--LGSASANVEAICFVEFESSYHATIAKMGAADYRLDKIDRNSAVLRIEYAKSK 277          
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: D7FXN5_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN5_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.900e-37
Identity = 66/80 (82.50%), Postives = 70/80 (87.50%), Query Frame = 0
Query:    1 MGDSRDTPSSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEHDVGFVDFRDPESATIAKDRFKGHELRGHIIAV 80
            MGD RDTPS  LFVSDLPSDITEKELE+LFAGCHGF+SCRVRKDK+EHDVGFVDF D ESATIAK+RFKGH  RGH I  
Sbjct:    1 MGD-RDTPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPIGA 79          
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A835Z002_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z002_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.290e-28
Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 0
Query:  154 MGLPLRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPKGGGG 262
            MGLPL+LP DA  TLYVEG+P DASERE+AHIFRPFPGY SLR+R K    G       +  A+CFVEF++AY A++AK+   +Y++D+ D     L + YA+ + G G
Sbjct:    1 MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARG-----DGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYARGRRGTG 104          
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: L8H910_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H910_ACACA)

HSP 1 Score: 119 bits (297), Expect = 7.730e-28
Identity = 88/282 (31.21%), Postives = 137/282 (48.58%), Query Frame = 0
Query:    9 SSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEHDVGFVDFRDPESATIAKDRFKGHELR---GHIIAVCYARAGRKRARTDRNDPRENSSGHHRTPSGNLLQGVGASYIGLGGVPGM------------GGLHHPAHAPAYGMASPRLIQMSAM-------------------GLPLRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAK 256
            S+ LF++++P ++TE E    F+   G+ S R+R+D++E+ VGFV+F D +SA  A+++F   +      H I + +A    +    +R+D +   S H+  PS +  +G         G   M             GL       +  M  P  + MS M                       +L  DA  TLYVEG+P DA+ERE+AHIFR  PGY+ +R++ K  +      PS   + +C+VEFE+ Y+A +A   +  Y++DK D  T  L I YAK
Sbjct:   45 STALFIAEIPLEVTEAEFRSTFSSEPGYISARLRRDRNENTVGFVEFSDHKSAAEAREQFNNFKFSHNDDHGITIHFAHEHSRNKHRERDDGKHYGSQHYDQPSSSR-KGYNXXXXXXDGYGSMRAADVNSRVSLTSGLPLVPMGVSPMMPGPTSLDMSGMQFYSTVAPNAQFASYVQPQAYSPQLSPDAAPTLYVEGLPLDATEREVAHIFRQMPGYLGIRIKPKESKQH----PSRVFN-LCWVEFETKYNAAVALHHLKGYKMDKND--TKGLTISYAK 318          
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A8J5XR47_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XR47_DIALT)

HSP 1 Score: 110 bits (276), Expect = 9.400e-24
Identity = 91/282 (32.27%), Postives = 130/282 (46.10%), Query Frame = 0
Query:    9 SSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEHDVGFVDFRDPESATIAKDRFKGHELRGHIIAVCYARAGRKRA----------RTDRNDPRENSSGHHRTPSGNLLQ----GVGASYIGLGGVPGMGGLHHP----AHAPAYGMASPRL----------------IQMSAMGLPLRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAK 256
            S+ LFV+DLPS++ E EL  +F    G+ + R+R DK    VGFV+F  P+ A  AK+   G  + G  + +    A   RA          +  R D      G  R+P  N       G G +Y G    P    L  P     +AP      PR                    +   L + +P  A  TLY++ VPADA++RE++HIFRP+ G+ S+RL AK  +  G          +CF EF++ +HAT A+  V  YR+DK D  T  L  ++AK
Sbjct:  477 SNTLFVADLPSEMKESELSGIFRHLRGYLTSRLRTDKSARVVGFVEFEVPDLAAAAKEMLDGQRVSGVPVPLRMQFAKPMRAIPQRSPLPAPKRAREDEPAAGRGAGRSPPANRAHARAHGDGDAY-GYEVPPRAAVLALPPASLGYAPVAATYDPRAPPPHLAPLVXXXXXXXXAPAPERLAMPIPPGASATLYIDNVPADATQRELSHIFRPYAGFQSVRLIAKEAKRAGEPHRW-----LCFAEFDNKFHATAARNHVQGYRMDKND--TRGLGCDFAK 750          
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A6J0KMJ8_RAPSA (nuclear speckle RNA-binding protein A-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KMJ8_RAPSA)

HSP 1 Score: 97.8 bits (242), Expect = 1.160e-21
Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 0
Query:  126 VPGMGGLHHPAHAPAYGMASPRLIQMSAMGLPLRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGG--RNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPKGGGGRDRGGDR 269
            +PG GG+  P   P  G     L         LRLP DA  TL+VEG+P+D S RE+AHIFRPFPGY  +RL  K    RNG L         +CFV+FE+   A  A+  +  YR+D+ +R++ +L I++++  G     RGG R
Sbjct:   13 MPGRGGVFPPGFGPNIGSDQQDLGGRPPSWELLRLPPDASSTLFVEGLPSDCSMREVAHIFRPFPGYKEVRLVTKDSKHRNGDLI-------ILCFVDFENPACAATARNALQGYRMDEEERDSKILRIQFSRNPGPRPGQRGGRR 151          
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A7S0HWY9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HWY9_9EUKA)

HSP 1 Score: 101 bits (252), Expect = 1.470e-21
Identity = 91/308 (29.55%), Postives = 130/308 (42.21%), Query Frame = 0
Query:    4 SRDTPSSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEHDVGFVDFRDPESATIAKDRFKGHE----LRGHIIAVCYARAGRKRARTDRNDP-------------RENSSGHHRTPSGN-LLQGVGASY-------IGLGGVPGMGGLHH--------------------PAHAPAYGMASPRLIQMSAMGLP-----LRLPSDAHHTLYVEGVPADASEREMAHIFRPFPG--YISLRLRAKGGRNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPKG 259
            SR  PS+CLF+ +LP+D+T+  LE+ F G  GF   R RKD++   VGFV+F   + A   +D  +G      +  HI      +   KR R +   P             R N+        G  ++Q  G  Y                   HH                    P + P            +   +P      +LP DA  TLYVEG+P+DA+ERE+AHIFR F G  Y S+R+ A+   +    G +     +CFVEF++ + AT     +  YR+DK      V  I +AK KG
Sbjct:    2 SRAPPSNCLFLPELPADLTDATLERHFRGFVGFQVARTRKDRNSKLVGFVEFDAVDDAVRCRDSMQGTSPFEGISWHIHYSNNTKGTPKRPREEMEQPVSRMDAQRPAMYDRPNNQXXXXXXXGAPMMQSPGGGYGXXXXXXXXXXXXXXXXXXHHGXXXXXXXXXXXXXXXXXXGPMYQPMXXXXXXXXXXPAGSSIPPNYLSAQLPRDASSTLYVEGLPSDATEREVAHIFRRFEGHGYQSIRMLAR--ESSKTPGKNLY---LCFVEFDNPHQATACLHQMQGYRVDKAIEGAGVK-ISFAKSKG 303          
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A2Z7B0E0_9LAMI (RRM domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B0E0_9LAMI)

HSP 1 Score: 92.4 bits (228), Expect = 8.160e-19
Identity = 63/153 (41.18%), Postives = 85/153 (55.56%), Query Frame = 0
Query:  128 GMGGLHH---PAHAPAYGMASPRLIQMSAMGLPLR----LPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGD--AICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPKGGGGRDRGGDRDR 271
            G+GGL H   P  +P  G     +    +MGL  R    LP DA  TL+VEG+PA+ + RE+AHIFRPF GY  +RL  KG R+ G       GD   +CFV+F+S  HA  A   +  Y  D+LDR++  L +++A+  G   R  GG R R
Sbjct:   86 GLGGLRHVDDPRTSPIGGSDPVVVANDLSMGLGGRSNIPLPPDASGTLFVEGLPANCTRREVAHIFRPFVGYKEVRLVNKGSRHTG-------GDPLVLCFVDFQSPAHAATAMDALKGYLFDELDRDSGHLRLQFARHPGA--RSGGGYRGR 229          
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A7R9U868_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U868_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.450e-18
Identity = 79/256 (30.86%), Postives = 113/256 (44.14%), Query Frame = 0
Query:    9 SSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEH------DVGFVDFRDPESATIAKDRFKGHELRGHIIAVCYARAGRKRARTDRNDPRENSSGHHRTPSGNLLQGVGASYIGLGGVPGMGGLHHPAHAPAYGMASPRLIQMSAMGLPLRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPK 258
            ++ L+  +LP D+   +L   F+   GF + R+R+ +  +         FV+F    +A  A   F+G EL   + A   A A       D N    N+      P  +LL  V      L     +  L H A   +YG A+ R           +LP  +   L+V  +P++ S+RE+AHIFRPFPGY SLRL   G R             I FV FES   +TIA   +  YR+D    +   L IEY KP+
Sbjct:   17 TTTLYCRNLPDDVRPLDLTHHFSRAAGFKAARLRRSRAANLPAGRGMCAFVEFESVAAAEHAMRAFEGSEL---LDAGGGATALELEFTRDANHRPVNAPQPRMGPLDDLLFAVQEPKARLPLPQALDSLRH-ASGQSYGSANDRS----------KLPPGSSRILFVGNLPSNMSDRELAHIFRPFPGYESLRLARSGER------------LIAFVSFESEVSSTIAMWTLQGYRVDLNSLSDTRLRIEYCKPR 246          
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A1U8H4N9_CAPAN (RNA-binding protein 1-like isoform X1 n=8 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8H4N9_CAPAN)

HSP 1 Score: 90.1 bits (222), Expect = 7.190e-18
Identity = 55/145 (37.93%), Postives = 80/145 (55.17%), Query Frame = 0
Query:  134 HPAHAP---AYGMASPRLIQMSAMGLP-----LRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGDAI--CFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPKG---GGGRDR 265
            HP  AP     G + P   +   +G+P     + LP DA  TL+VEG+PAD + RE++HIFRPF GY  +RL  KG ++ G       GD +  CFV+F S  H+  A   +  Y+ D+ DR++  L +++A+  G   GGG  R
Sbjct:  101 HPIEAPRVMGIGGSDPLAFKGRNVGMPGGRPEVTLPPDASSTLFVEGLPADCTRREVSHIFRPFVGYKEVRLVQKGSKHAG-------GDPLILCFVDFASPLHSAAAMDALQGYKFDEHDRDSVSLRLQFARNPGARSGGGNSR 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4C0_9PHAE2.450e-11465.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXN5_ECTSI2.900e-3782.50RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z002_9STRA1.290e-2852.29RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
L8H910_ACACA7.730e-2831.21RNA recognition motif domain containing protein n=... [more]
A0A8J5XR47_DIALT9.400e-2432.27Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A6J0KMJ8_RAPSA1.160e-2140.41nuclear speckle RNA-binding protein A-like n=1 Tax... [more]
A0A7S0HWY9_9EUKA1.470e-2129.55Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A2Z7B0E0_9LAMI8.160e-1941.18RRM domain-containing protein n=1 Tax=Dorcoceras h... [more]
A0A7R9U868_9STRA4.450e-1830.86Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1U8H4N9_CAPAN7.190e-1837.93RNA-binding protein 1-like isoform X1 n=8 Tax=Caps... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 11..81
e-value: 1.1E-13
score: 61.4
coord: 167..253
e-value: 0.11
score: 15.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 12..78
e-value: 8.0E-14
score: 51.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 10..85
score: 13.277
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 166..257
score: 9.183
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 159..260
e-value: 4.0E-14
score: 54.5
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..95
e-value: 3.1E-20
score: 74.2
NoneNo IPR availablePANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 9..84
coord: 133..256
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 7..233

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2246contigH-paniculata_contig2246:3371..9898 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2246.5976.1mRNA_H-paniculata_contig2246.5976.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2246 361..10073 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2246.5976.1 ID=prot_H-paniculata_contig2246.5976.1|Name=mRNA_H-paniculata_contig2246.5976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MGDSRDTPSSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEHDV
GFVDFRDPESATIAKDRFKGHELRGHIIAVCYARAGRKRARTDRNDPREN
SSGHHRTPSGNLLQGVGASYIGLGGVPGMGGLHHPAHAPAYGMASPRLIQ
MSAMGLPLRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAK
GGRNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVL
HIEYAKPKGGGGRDRGGDRDRF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf