mRNA_H-paniculata_contig2246.5976.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A6H5L4C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C0_9PHAE) HSP 1 Score: 343 bits (879), Expect = 3.550e-103 Identity = 187/284 (65.85%), Postives = 211/284 (74.30%), Query Frame = 2
Query: 176 MGDSRDTPSSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEHDVGFVDFRDPESATIAKDRFKGHELRGHIIAVCYARAGRKRARTDRNDPRENSSG---------------HHRTPSGNL-------LQGVGASYIGLGGVPGMGGLHHPAHAPAYGMASPRLIQ----MSAMGLPLRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPK 949
MGD RD PS LFVSDLPSDITEKELE+LFAGCHGF+SCRVRKDK+EHDVGFVDF D ESATIAK+RFKGH RGH IAVCYAR RKR R +R+D R+ G TPSG + L V Y+G+G + G+GG+H A AYGMA+PRL+Q MSAMGLPL LPSDAHHTLYVEG+P D SERE+AHIFRPFPGYISLRLRAKGGR+ L S + +AICFVEFES+YHATIAKMG A+YRLDK+DRN+ VL IEYAK K
Sbjct: 1 MGD-RDIPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPIAVCYARPARKRHRPERSDARDMDGGGDSRNYQSMQXXXXXXXXTPSGGVGGGLPTNLSSVNTGYLGMG-IGGIGGIHA---AQAYGMATPRLMQASTAMSAMGLPLGLPSDAHHTLYVEGIPGDVSERELAHIFRPFPGYISLRLRAKGGRS--LGSASANVEAICFVEFESSYHATIAKMGAADYRLDKIDRNSAVLRIEYAKSK 277
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: D7FXN5_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN5_ECTSI) HSP 1 Score: 136 bits (342), Expect = 4.420e-34 Identity = 66/80 (82.50%), Postives = 70/80 (87.50%), Query Frame = 2
Query: 176 MGDSRDTPSSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEHDVGFVDFRDPESATIAKDRFKGHELRGHIIAV 415
MGD RDTPS LFVSDLPSDITEKELE+LFAGCHGF+SCRVRKDK+EHDVGFVDF D ESATIAK+RFKGH RGH I
Sbjct: 1 MGD-RDTPSHGLFVSDLPSDITEKELERLFAGCHGFESCRVRKDKNEHDVGFVDFLDTESATIAKERFKGHVFRGHPIGA 79
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A835Z002_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z002_9STRA) HSP 1 Score: 115 bits (287), Expect = 3.190e-26 Identity = 57/109 (52.29%), Postives = 75/109 (68.81%), Query Frame = 2
Query: 635 MGLPLRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPKGGGG 961
MGLPL+LP DA TLYVEG+P DASERE+AHIFRPFPGY SLR+R K G + A+CFVEF++AY A++AK+ +Y++D+ D L + YA+ + G G
Sbjct: 1 MGLPLQLPPDASSTLYVEGIPKDASEREVAHIFRPFPGYQSLRIRHKESARG-----DGAQRAMCFVEFDNAYQASVAKIACGDYQIDRTDPQAGTLIVHYARGRRGTG 104
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: L8H910_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H910_ACACA) HSP 1 Score: 118 bits (295), Expect = 6.590e-25 Identity = 88/282 (31.21%), Postives = 137/282 (48.58%), Query Frame = 2
Query: 200 SSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEHDVGFVDFRDPESATIAKDRFKGHELR---GHIIAVCYARAGRKRARTDRNDPRENSSGHHRTPSGNLLQGVGASYIGLGGVPGM------------GGLHHPAHAPAYGMASPRLIQMSAM-------------------GLPLRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAK 943
S+ LF++++P ++TE E F+ G+ S R+R+D++E+ VGFV+F D +SA A+++F + H I + +A + +R+D + S H+ PS + +G G M GL + M P + MS M +L DA TLYVEG+P DA+ERE+AHIFR PGY+ +R++ K + PS + +C+VEFE+ Y+A +A + Y++DK D T L I YAK
Sbjct: 45 STALFIAEIPLEVTEAEFRSTFSSEPGYISARLRRDRNENTVGFVEFSDHKSAAEAREQFNNFKFSHNDDHGITIHFAHEHSRNKHRERDDGKHYGSQHYDQPSSSR-KGYNXXXXXXDGYGSMRAADVNSRVSLTSGLPLVPMGVSPMMPGPTSLDMSGMQFYSTVAPNAQFASYVQPQAYSPQLSPDAAPTLYVEGLPLDATEREVAHIFRQMPGYLGIRIKPKESKQH----PSRVFN-LCWVEFETKYNAAVALHHLKGYKMDKND--TKGLTISYAK 318
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A8J5XR47_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XR47_DIALT) HSP 1 Score: 110 bits (274), Expect = 1.430e-20 Identity = 91/282 (32.27%), Postives = 130/282 (46.10%), Query Frame = 2
Query: 200 SSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEHDVGFVDFRDPESATIAKDRFKGHELRGHIIAVCYARAGRKRA----------RTDRNDPRENSSGHHRTPSGNLLQ----GVGASYIGLGGVPGMGGLHHP----AHAPAYGMASPRL----------------IQMSAMGLPLRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAK 943
S+ LFV+DLPS++ E EL +F G+ + R+R DK VGFV+F P+ A AK+ G + G + + A RA + R D G R+P N G G +Y G P L P +AP PR + L + +P A TLY++ VPADA++RE++HIFRP+ G+ S+RL AK + G +CF EF++ +HAT A+ V YR+DK D T L ++AK
Sbjct: 477 SNTLFVADLPSEMKESELSGIFRHLRGYLTSRLRTDKSARVVGFVEFEVPDLAAAAKEMLDGQRVSGVPVPLRMQFAKPMRAIPQRSPLPAPKRAREDEPAAGRGAGRSPPANRAHARAHGDGDAY-GYEVPPRAAVLALPPASLGYAPVAATYDPRAPPPHLAPLVXXXXXXXXAPAPERLAMPIPPGASATLYIDNVPADATQRELSHIFRPYAGFQSVRLIAKEAKRAGEPHRW-----LCFAEFDNKFHATAARNHVQGYRMDKND--TRGLGCDFAK 750
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A6J0KMJ8_RAPSA (nuclear speckle RNA-binding protein A-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0KMJ8_RAPSA) HSP 1 Score: 97.1 bits (240), Expect = 1.420e-19 Identity = 59/146 (40.41%), Postives = 81/146 (55.48%), Query Frame = 2
Query: 551 VPGMGGLHHPAHAPAYGMASPRLIQMSAMGLPLRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGG--RNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPKGGGGRDRGGDR 982
+PG GG+ P P G L LRLP DA TL+VEG+P+D S RE+AHIFRPFPGY +RL K RNG L +CFV+FE+ A A+ + YR+D+ +R++ +L I++++ G RGG R
Sbjct: 13 MPGRGGVFPPGFGPNIGSDQQDLGGRPPSWELLRLPPDASSTLFVEGLPSDCSMREVAHIFRPFPGYKEVRLVTKDSKHRNGDLI-------ILCFVDFENPACAATARNALQGYRMDEEERDSKILRIQFSRNPGPRPGQRGGRR 151
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A7S0HWY9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HWY9_9EUKA) HSP 1 Score: 101 bits (252), Expect = 1.760e-19 Identity = 91/308 (29.55%), Postives = 130/308 (42.21%), Query Frame = 2
Query: 185 SRDTPSSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEHDVGFVDFRDPESATIAKDRFKGHE----LRGHIIAVCYARAGRKRARTDRNDP-------------RENSSGHHRTPSGN-LLQGVGASY-------IGLGGVPGMGGLHH--------------------PAHAPAYGMASPRLIQMSAMGLP-----LRLPSDAHHTLYVEGVPADASEREMAHIFRPFPG--YISLRLRAKGGRNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPKG 952
SR PS+CLF+ +LP+D+T+ LE+ F G GF R RKD++ VGFV+F + A +D +G + HI + KR R + P R N+ G ++Q G Y HH P + P + +P +LP DA TLYVEG+P+DA+ERE+AHIFR F G Y S+R+ A+ + G + +CFVEF++ + AT + YR+DK V I +AK KG
Sbjct: 2 SRAPPSNCLFLPELPADLTDATLERHFRGFVGFQVARTRKDRNSKLVGFVEFDAVDDAVRCRDSMQGTSPFEGISWHIHYSNNTKGTPKRPREEMEQPVSRMDAQRPAMYDRPNNQXXXXXXXGAPMMQSPGGGYGXXXXXXXXXXXXXXXXXXHHGXXXXXXXXXXXXXXXXXXGPMYQPMXXXXXXXXXXPAGSSIPPNYLSAQLPRDASSTLYVEGLPSDATEREVAHIFRRFEGHGYQSIRMLAR--ESSKTPGKNLY---LCFVEFDNPHQATACLHQMQGYRVDKAIEGAGVK-ISFAKSKG 303
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A2Z7B0E0_9LAMI (RRM domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B0E0_9LAMI) HSP 1 Score: 91.3 bits (225), Expect = 1.070e-16 Identity = 63/153 (41.18%), Postives = 85/153 (55.56%), Query Frame = 2
Query: 557 GMGGLHH---PAHAPAYGMASPRLIQMSAMGLPLR----LPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGD--AICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPKGGGGRDRGGDRDR 988
G+GGL H P +P G + +MGL R LP DA TL+VEG+PA+ + RE+AHIFRPF GY +RL KG R+ G GD +CFV+F+S HA A + Y D+LDR++ L +++A+ G R GG R R
Sbjct: 86 GLGGLRHVDDPRTSPIGGSDPVVVANDLSMGLGGRSNIPLPPDASGTLFVEGLPANCTRREVAHIFRPFVGYKEVRLVNKGSRHTG-------GDPLVLCFVDFQSPAHAATAMDALKGYLFDELDRDSGHLRLQFARHPGA--RSGGGYRGR 229
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A7R9U868_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U868_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 3.190e-16 Identity = 82/266 (30.83%), Postives = 116/266 (43.61%), Query Frame = 2
Query: 170 AAMGDSRDTPSSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEH------DVGFVDFRDPESATIAKDRFKGHELRGHIIAVCYARAGRKRARTDRNDPRENSSGHHRTPSGNLLQGVGASYIGLGGVPGMGGLHHPAHAPAYGMASPRLIQMSAMGLPLRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGDAICFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPK 949
AAM ++ L+ +LP D+ +L F+ GF + R+R+ + + FV+F +A A F+G EL + A A A D N N+ P +LL V L + L H A +YG A+ R +LP + L+V +P++ S+RE+AHIFRPFPGY SLRL G R I FV FES +TIA + YR+D + L IEY KP+
Sbjct: 7 AAMEALLRPSTTTLYCRNLPDDVRPLDLTHHFSRAAGFKAARLRRSRAANLPAGRGMCAFVEFESVAAAEHAMRAFEGSEL---LDAGGGATALELEFTRDANHRPVNAPQPRMGPLDDLLFAVQEPKARLPLPQALDSLRH-ASGQSYGSANDRS----------KLPPGSSRILFVGNLPSNMSDRELAHIFRPFPGYESLRLARSGER------------LIAFVSFESEVSSTIAMWTLQGYRVDLNSLSDTRLRIEYCKPR 246
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Match: A0A1U8H4N9_CAPAN (RNA-binding protein 1-like isoform X1 n=8 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8H4N9_CAPAN) HSP 1 Score: 89.7 bits (221), Expect = 4.480e-16 Identity = 55/145 (37.93%), Postives = 80/145 (55.17%), Query Frame = 2
Query: 575 HPAHAP---AYGMASPRLIQMSAMGLP-----LRLPSDAHHTLYVEGVPADASEREMAHIFRPFPGYISLRLRAKGGRNGGLSGPSFSGDAI--CFVEFESAYHATIAKMGVAEYRLDKLDRNTPVLHIEYAKPKG---GGGRDR 970
HP AP G + P + +G+P + LP DA TL+VEG+PAD + RE++HIFRPF GY +RL KG ++ G GD + CFV+F S H+ A + Y+ D+ DR++ L +++A+ G GGG R
Sbjct: 101 HPIEAPRVMGIGGSDPLAFKGRNVGMPGGRPEVTLPPDASSTLFVEGLPADCTRREVSHIFRPFVGYKEVRLVQKGSKHAG-------GDPLILCFVDFASPLHSAAAMDALQGYKFDEHDRDSVSLRLQFARNPGARSGGGNSR 238 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2246.5976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2246.5976.1 >prot_H-paniculata_contig2246.5976.1 ID=prot_H-paniculata_contig2246.5976.1|Name=mRNA_H-paniculata_contig2246.5976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp MGDSRDTPSSCLFVSDLPSDITEKELEKLFAGCHGFDSCRVRKDKHEHDVback to top mRNA from alignment at H-paniculata_contig2246:361..10073- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2246.5976.1 ID=mRNA_H-paniculata_contig2246.5976.1|Name=mRNA_H-paniculata_contig2246.5976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9713bp|location=Sequence derived from alignment at H-paniculata_contig2246:361..10073- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2246:361..10073- >mRNA_H-paniculata_contig2246.5976.1 ID=mRNA_H-paniculata_contig2246.5976.1|Name=mRNA_H-paniculata_contig2246.5976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at H-paniculata_contig2246:361..10073- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |