prot_H-paniculata_contig2243.5971.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2243.5971.1
Unique Nameprot_H-paniculata_contig2243.5971.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length303
Homology
BLAST of mRNA_H-paniculata_contig2243.5971.1 vs. uniprot
Match: D7FNA1_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA1_ECTSI)

HSP 1 Score: 314 bits (804), Expect = 9.210e-100
Identity = 154/295 (52.20%), Postives = 203/295 (68.81%), Query Frame = 0
Query:    1 EALAYYRRIQELGSFPPRFLCSLLVQLLVSEHMNDEAEAVFQDIIDRGMEPTEACATEIIRLRVQNDRVDGAMEILMMLEGNELSNDNSKLRFRSYQPVIRGLIRKGDMEGVMKLWKHMQWHNVLPKESFVVDLIADLTSNPDSAASEGAEMLADNMLDGVSRQIMYPSAPTVSALIEGFGAVLTDVSDEGDCTTCGSRLQKNDLGPMDRMQMRSAIMRVAALRSARQVQTLSWFASWLSSLNEMPTAVIDGPNVGYTGQNHGKGGFHLEQVDWLAEHMHSLGERVLIIMPKFYC 295
            EAL +++RI+ LG++PP  LCSLLVQLL +E M +EAE  F D++  GM                       ME+L M+EG E      + RFRSYQPVI  L+R+G+M+GVM+LWKHM+WH++ PKESF++DLI  +  N   ++ +    LAD++LDG+S+ ++YPSAPTV  L+EG+ A  TDVS++G CTTCG  LQ   L P DR +MRS+I+R+AA   AR+VQ LSWFA+W  SL + PTA+IDGPNVG+  QN  +GGF L QVDWLAEH+ S GERVLI MP +YC
Sbjct:  286 EALEFFKRIRSLGAYPPPTLCSLLVQLLAAEGMLEEAEEQFADMLKYGMLXXXXXXXXXXXXXXXXXXXXXXMEVLAMMEGREYQKKFCRPRFRSYQPVICELLRRGEMDGVMQLWKHMEWHSIRPKESFLLDLIEGIAKNHQVSSRDSLAQLADHLLDGMSKTLIYPSAPTVKTLVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVRIAAQNGAREVQRLSWFANWFCSLEDPPTAIIDGPNVGFMNQNFKEGGFSLTQVDWLAEHLKSKGERVLITMPWYYC 580          
BLAST of mRNA_H-paniculata_contig2243.5971.1 vs. uniprot
Match: A0A6H5JYJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYJ8_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 1.240e-81
Identity = 126/246 (51.22%), Postives = 168/246 (68.29%), Query Frame = 0
Query:   65 QNDRVDGAMEILMMLEGNELSNDNSKLRFRSYQPVIRGLIRKGDMEGVMKLWKHMQWHNVLPKESFVVDLIADLTSNPDSAASEGAEMLADNMLDGVSRQIMYPSAPTVSALIEGFGAVLTDVSDEGDCTTCGSRLQKNDLGPMDRMQMRSAIMRVAALRSARQVQTLSWFASWLSSLNEMPTAVIDGPNVGYTGQNHGKGGFHLEQ---------------VDWLAEHMHSLGERVLIIMPKFYC 295
            Q  ++  AME+L M+EG E      + RFRSYQPVI  L+R+G+M+GVM+LW+HM+WH++ PKESF++DLI  + +N  +++      LAD++LDG+S+ ++YPSAPTV AL+EG+ A  TDVS++G CTTCG  LQ   L P DR +MRS+I+ +AA   AR VQ LSWFA+W  SL + PTA+IDGPNVG+  QN   GG    Q               VDWLAEH++S GERVLI MP +YC
Sbjct:   10 QRGKLAEAMEVLAMMEGREYQQKFCRPRFRSYQPVICELLRRGEMDGVMQLWQHMKWHSIRPKESFLLDLIEGIANNHHASSRNSLTQLADHLLDGMSKTLIYPSAPTVKALVEGWNAKWTDVSEQGTCTTCGEMLQGTRLTPEDRARMRSSIVHIAAQNGARAVQRLSWFANWFCSLEDPPTAIIDGPNVGFMNQNFKGGGLSFTQARSSQSRAACYLISRVDWLAEHLNSKGERVLITMPWYYC 255          
BLAST of mRNA_H-paniculata_contig2243.5971.1 vs. uniprot
Match: A0A836CLC4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC4_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.270e-27
Identity = 69/185 (37.30%), Postives = 100/185 (54.05%), Query Frame = 0
Query:  115 LWKHMQWHNVLPKESFVVDLIADLTSNPDSAASEGAEMLADNMLDGVSRQIMYPSAPTVSALIEGFG--AVLTDVSDEGDCTTCGSRLQKNDLGPMDRMQMRSAIMRVAALRSARQVQTLSWFASWLSSLNEMPTAVIDGPNVGYTGQNHGKGGFHLEQVDWLAEHMHSLGERVLIIMPKFYCMP 297
            LW  M    V P+E F V L         + A   A+   D+ L G+++ + YPS   V  LIE  G  AV T V  +G C  CG RLQ+  L    R ++R+ +M +AA   A +   L+ FA+ + ++   PTA++DGPN+ Y GQN+ +G F  EQVD +  H+ + GER LI++P  Y  P
Sbjct:  359 LWARMAQRGVAPQERFFVALAG-------ACARRSADEGLDSALAGLAKCVEYPSTGAVKQLIELLGERAVHTSVGRDGRCQCCGGRLQRIGLTAAQRRRLRNRVMLLAAQAGAPKALALADFAAHVGAMRPPPTAILDGPNIAYHGQNYSQGAFSFEQVDAVVRHLEASGERPLIVLPAHYAQP 536          
BLAST of mRNA_H-paniculata_contig2243.5971.1 vs. uniprot
Match: A0A7S0CK07_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK07_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 9.940e-6
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 0
Query:  225 SARQVQTLSWFASWLSSLNEMP-TAVIDGPNVGYTGQNHGKGGFHLEQVDWLAEHMHSLGERVLIIMPKFYCM 296
            S R    LS FA WL+     P TA++DG NV Y+GQN  +G F+  Q+ +L + + S+GE  L+I+P  Y M
Sbjct:  238 SKRAEYELSTFADWLNVRKGEPFTAIVDGANVAYSGQNFEQGRFNYHQIKFLTDALISMGENPLVIVPYKYTM 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2243.5971.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNA1_ECTSI9.210e-10052.20PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JYJ8_9PHAE1.240e-8151.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CLC4_9STRA5.270e-2737.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0CK07_9STRA9.940e-642.47Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 95..120
e-value: 0.0013
score: 16.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 92..126
score: 8.824
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 17..51
score: 8.079
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..210
e-value: 1.9E-15
score: 59.2
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 33..174
e-value: 1.9E-10
score: 40.5
NoneNo IPR availableGENE3D3.40.50.11980coord: 211..301
e-value: 9.1E-12
score: 46.8
NoneNo IPR availablePANTHERPTHR13547UNCHARACTERIZEDcoord: 2..291

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2243contigH-paniculata_contig2243:300..10506 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2243.5971.1mRNA_H-paniculata_contig2243.5971.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2243 300..10506 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2243.5971.1 ID=prot_H-paniculata_contig2243.5971.1|Name=mRNA_H-paniculata_contig2243.5971.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=303bp
EALAYYRRIQELGSFPPRFLCSLLVQLLVSEHMNDEAEAVFQDIIDRGME
PTEACATEIIRLRVQNDRVDGAMEILMMLEGNELSNDNSKLRFRSYQPVI
RGLIRKGDMEGVMKLWKHMQWHNVLPKESFVVDLIADLTSNPDSAASEGA
EMLADNMLDGVSRQIMYPSAPTVSALIEGFGAVLTDVSDEGDCTTCGSRL
QKNDLGPMDRMQMRSAIMRVAALRSARQVQTLSWFASWLSSLNEMPTAVI
DGPNVGYTGQNHGKGGFHLEQVDWLAEHMHSLGERVLIIMPKFYCMPAAS
HR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long