mRNA_H-paniculata_contig22410.5967.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22410.5967.1
Unique NamemRNA_H-paniculata_contig22410.5967.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: D8LD63_ECTSI (Rhomboid-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD63_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 6.320e-72
Identity = 110/166 (66.27%), Postives = 132/166 (79.52%), Query Frame = 1 
Query:    7 DAEEGGGGE--------GYADD-DGRDRAGDEYGFDMFDPVWGKPDYPPSHQPTARQLCGVMCCPCLMGRDGWRTARNLNVWKRIRRRASVITCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLHGGVLHMIMN 477
            DAEEG GG+        GY DD + ++  G EYGF MFDPVWGKPDYPP H  T  Q CGV+CCPCLMGRDGWR +RN NVW+RIR+RA++IT  VDI  F++S+++NGGFQ MWG+ D+NPLLGPS  TL++LGAKH+ LIQEGQVWRL+TPILLHGGVLH+ MN
Sbjct:   84 DAEEGRGGDRDADNSGGGYDDDWEDQNMDGQEYGFVMFDPVWGKPDYPPGHHTTKCQFCGVLCCPCLMGRDGWRGSRNRNVWRRIRKRAAIITSGVDIVAFVLSIIINGGFQSMWGKVDSNPLLGPSIETLMALGAKHLTLIQEGQVWRLLTPILLHGGVLHIFMN 249
[Close]
BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: C7G025_DICDI (Rhomboid-like protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=C7G025_DICDI)

HSP 1 Score: 69.7 bits (169), Expect = 6.250e-11
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  265 VDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLHGGVLHMIMN 477
            +D+ +F+  ++ NGGF+P W     NP  GP++ TLL +GAK+  LI  G+ WR  TPI LH G+ H +MN
Sbjct:  246 IDLVMFIWEIIYNGGFEP-W---KTNPWFGPNSYTLLDVGAKYSPLILNGEWWRFFTPIFLHVGIFHYLMN 312
[Close]
BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: F4QD49_CAVFA (Rhomboid-like protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4QD49_CAVFA)

HSP 1 Score: 69.7 bits (169), Expect = 6.260e-11
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1 
Query:  250 VITCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLHGGVLHMIMN 477
            ++   +D  + +  +++NGGF+P W     NP  GPSA TLL++GAK+  LI  G+ WR  +PI LH G+ H++MN
Sbjct:  239 ILVSIIDTCLLIWEIVLNGGFEP-W---KTNPWFGPSASTLLNVGAKYAPLILYGEWWRFFSPIFLHVGIFHLLMN 310
[Close]
BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: A0A835Z0C4_9STRA (Rhomboid-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0C4_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 7.260e-11
Identity = 52/155 (33.55%), Postives = 72/155 (46.45%), Query Frame = 1 
Query:   64 AGDEYGFDMFDPVWGKPDYPPSHQPTARQLCGVMCCPCLMGRD-GWRTARNLN---------------VWKRIRRRASVITCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLI-QEGQVWRLITPILLHGGVLHMIMN 477
            A DE   +M DPVWGK        P   Q+     CPCL+G    W     L                V +R+ +  +V   AV +A+ L ++ V GG          NP+LGP    L+  GAK   LI    Q WRL+TP+LLH G++H+++N
Sbjct:   87 ADDERDPEMEDPVWGKLVVEQVGGPRPHQVLCFAFCPCLVGPTLRWERRTMLGGLSVPVLLCDSGKSAVIRRLMKTWAVGFGAVQVAMLLQALTVGGGGL---APTSVNPMLGPWPSVLVIQGAKVASLIVYRHQYWRLMTPLLLHAGLIHLVVN 238
[Close]
BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: A0A6A5BEA9_NAEFO (Rhomboid-like protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BEA9_NAEFO)

HSP 1 Score: 69.3 bits (168), Expect = 7.990e-11
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = 1 
Query:  133 QPTARQLCGVMCCPCLMGRDGWRTARNLNVWKRIRRRASVITCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEG-QVWRLITPILLHGGVLHMIMN 477
            QP    +C + CCPC +G       R  + +K +          V +  F++ + V GGF P       NP +GPS++TLL LGAK    I+E  ++WRL+ P+++H G+LH+ MN
Sbjct:  155 QPQWYHMCLMCCCPCFVG-PPCSPVRKQD-YKNMLMTFCFWISIVQLIYFIVELSV-GGFDPQ------NPSIGPSSLTLLKLGAKSSYYIKEKYELWRLVVPLIMHAGILHIFMN 261
[Close]
BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: A0A7S3GEP9_9EUKA (Rhomboid-like protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3GEP9_9EUKA)

HSP 1 Score: 68.2 bits (165), Expect = 2.170e-10
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:  265 VDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLHGGVLHMIMN 477
            VD  +  IS+++  GF P+      NP+ GPSA  L  +GAK+  LI+EG++WR++TP+ LH GV H  MN
Sbjct:  215 VDTVLLGISLIIQPGFVPL----SENPMAGPSARVLSEMGAKNDSLIEEGELWRIVTPMFLHAGVFHWAMN 281
[Close]
BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: A0A8J4Q3D2_9MYCE (Rhomboid-like protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q3D2_9MYCE)

HSP 1 Score: 66.2 bits (160), Expect = 1.010e-9
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:  250 VITCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLHGGVLHMIMN 477
            ++   +++A+ +  ++ N G +P W     NP  GPSA TLL +GAK   LI+EG+ WR  +PI LH G+ H++MN
Sbjct:  247 ILISLINVALLIWEIIYNKGIEP-W---KVNPWFGPSAQTLLDVGAKSSPLIKEGEWWRFFSPIFLHVGIFHLLMN 318
[Close]
BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: A0A7S0ES09_9CRYP (Rhomboid-like protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0ES09_9CRYP)

HSP 1 Score: 65.5 bits (158), Expect = 1.600e-9
Identity = 38/103 (36.89%), Postives = 55/103 (53.40%), Query Frame = 1 
Query:  169 CPCLMGRDGWRTARNLNVWKRIRRRASVITCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLHGGVLHMIMN 477
            CPC +   G+          R +   SVIT A +I VF++++ + G   P       N ++GPS+   L LGAK+   I  GQ WRL+ PI LH GV+H++ N
Sbjct:  109 CPCCINGVGYAVKTFYETALRCKF-TSVITLA-EIVVFVVTISIYGFTSP-----SNNNMIGPSSEAFLELGAKYTPYILNGQAWRLVVPIFLHAGVVHILAN 204
[Close]
BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: A0A7S2KJA0_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KJA0_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.880e-9
Identity = 33/75 (44.00%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:  256 TCAVDIAVFLISVLVNGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLI-QEGQVWRLITPILLHGGVLHMIMN 477
            T A    + ++S+L NGG +        NP++GPSA TL+ LGAK   LI  EG+++RL +P++LH GV+H I+N
Sbjct:  203 TLAFCTIMLVVSILENGGIESA----SVNPMIGPSAETLIDLGAKQTALIVDEGEIYRLFSPMVLHAGVIHYIVN 273
[Close]
BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Match: A0A7S0A294_9STRA (Rhomboid-like protein (Fragment) n=1 Tax=Rhizosolenia setigera TaxID=3005 RepID=A0A7S0A294_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.060e-9
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:  286 ISVLVNG-GFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLI-QEGQVWRLITPILLHGGVLHMIMN 477
            +S+  NG   +P+      NP++GPSA TL+ LGAK+  LI  E QVWRL+TP+ LH G++H I N
Sbjct:    1 VSIAFNGWSVEPI----STNPMIGPSAETLIQLGAKYTDLIVNENQVWRLVTPMFLHAGLIHYIFN 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22410.5967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD63_ECTSI6.320e-7266.27Rhomboid-like protein n=1 Tax=Ectocarpus siliculos... [more]
C7G025_DICDI6.250e-1145.07Rhomboid-like protein n=1 Tax=Dictyostelium discoi... [more]
F4QD49_CAVFA6.260e-1142.11Rhomboid-like protein n=1 Tax=Cavenderia fascicula... [more]
A0A835Z0C4_9STRA7.260e-1133.55Rhomboid-like protein n=1 Tax=Tribonema minus TaxI... [more]
A0A6A5BEA9_NAEFO7.990e-1135.34Rhomboid-like protein n=2 Tax=Naegleria TaxID=5761... [more]
A0A7S3GEP9_9EUKA2.170e-1045.07Rhomboid-like protein n=1 Tax=Palpitomonas bilix T... [more]
A0A8J4Q3D2_9MYCE1.010e-940.79Rhomboid-like protein n=1 Tax=Polysphondylium viol... [more]
A0A7S0ES09_9CRYP1.600e-936.89Rhomboid-like protein n=1 Tax=Hanusia phi TaxID=30... [more]
A0A7S2KJA0_9STRA1.880e-944.00Rhomboid-like protein (Fragment) n=1 Tax=Leptocyli... [more]
A0A7S0A294_9STRA3.060e-948.48Rhomboid-like protein (Fragment) n=1 Tax=Rhizosole... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22410contigH-paniculata_contig22410:352..3906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.3
Seed ortholog evalue1.9e-59
Seed eggNOG ortholog2880.D8LD63
Preferred nameROM1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0705@1,KOG2289@2759
Ec32 ortholog descriptionPeptidase S54, rhomboid
Ec32 orthologEc-11_000620.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size480
Cds size480
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22410.5967.1prot_H-paniculata_contig22410.5967.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22410 352..3906 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929622.52078-CDS-H-paniculata_contig22410:351..4651622929622.52078-CDS-H-paniculata_contig22410:351..465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22410 352..465 -
1691480939.4260762-CDS-H-paniculata_contig22410:351..4651691480939.4260762-CDS-H-paniculata_contig22410:351..465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22410 352..465 -
1622929622.5318675-CDS-H-paniculata_contig22410:1325..13761622929622.5318675-CDS-H-paniculata_contig22410:1325..1376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22410 1326..1376 -
1691480939.438137-CDS-H-paniculata_contig22410:1325..13761691480939.438137-CDS-H-paniculata_contig22410:1325..1376Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22410 1326..1376 -
1622929622.543537-CDS-H-paniculata_contig22410:2071..22361622929622.543537-CDS-H-paniculata_contig22410:2071..2236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22410 2072..2236 -
1691480939.4478242-CDS-H-paniculata_contig22410:2071..22361691480939.4478242-CDS-H-paniculata_contig22410:2071..2236Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22410 2072..2236 -
1622929622.553434-CDS-H-paniculata_contig22410:3756..39061622929622.553434-CDS-H-paniculata_contig22410:3756..3906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22410 3757..3906 -
1691480939.463694-CDS-H-paniculata_contig22410:3756..39061691480939.463694-CDS-H-paniculata_contig22410:3756..3906Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22410 3757..3906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22410.5967.1

>prot_H-paniculata_contig22410.5967.1 ID=prot_H-paniculata_contig22410.5967.1|Name=mRNA_H-paniculata_contig22410.5967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
DADAEEGGGGEGYADDDGRDRAGDEYGFDMFDPVWGKPDYPPSHQPTARQ
LCGVMCCPCLMGRDGWRTARNLNVWKRIRRRASVITCAVDIAVFLISVLV
NGGFQPMWGRNDANPLLGPSAVTLLSLGAKHVGLIQEGQVWRLITPILLH
GGVLHMIMNV
back to top

mRNA from alignment at H-paniculata_contig22410:352..3906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22410.5967.1 ID=mRNA_H-paniculata_contig22410.5967.1|Name=mRNA_H-paniculata_contig22410.5967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3555bp|location=Sequence derived from alignment at H-paniculata_contig22410:352..3906- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCAGATGCTGAGGAGGGAGGGGGTGGTGAAGGGTACGCTGACGACGA
TGGACGGGATAGGGCTGGAGACGAGTACGGGTTTGATATGTTTGATCCGG
TCTGGGGAAAGCCGGATTACCCCCCGAGTCATCAGCCCACCGCTCGCCAG
GTGAGGATTCGAGCCGTGTTTATGTGTATTTCTGACCCGCTCATGGAACA
AGCCCAGTATCTTGGAACATTGGAAACATAGGCAAATCTTGGGATTGGGT
CGCAAATAGAAAATGCATGAGATGTCTATAGTGGTTGCTTCGCCAAATCG
AGGAACAAACGCATAGCCTAAGGGTGGATTTCGTTCTCGCTAGGTTGGTT
GGAGCGAGCTGATACGGTATATGTCGAACGGTGATGGATTGCCAGTAACG
TCGTGTTTACGCGCGAGATAAAATCAAACAGCAATCTGTTATGACGAGCG
ACGAATATCTTTGAGTTCGATGTGTGGCAAAATTGAATGTCGGGGTGAAT
GCGCACAAACTATCGACTCACACTTGTGTCTTACTGGTGTCAGTGTGTAT
CTTTAACTCTCTGGGAAATTGCCCCTGCCTAATTACCTGTGAAGTGCTTT
TTTATTATCTGGTCGTTACGAATATAACGATGTTTGCCCGTTCTTGTTCG
GCACTAAATCCAAGACAAAAGCCCCCAAACAGCAAAAAAACGCCTTCCGG
TGCACCCGAGATGCACTAACCAGCTAGGTAGGGCTGGTTGAGCATTCTGT
CGATGCTAGTAGTACGGTCACGGCTACGCCCATGCAGTTGGTGTTTTCCC
TCGTACCTCGCCTCGCTTTGCTCCCGCGTAGGCCCAATTTCCATGAATAT
TCATCGTTTAGAAGTTACTTGAGTGTAGAATTGAAAGTTGGTTTTAGAAT
AATCTCCACAGCCTTACCCTTCTTGCTAATAGGAGTATGATCTAAAATAC
TTCAGGGAGTCACTGATTTACTGTCCTCGCCGAAAAACGAAACATTTCCA
CCTACAAATAGAGCAATATACTGCACCACCCTACCTAGACAGTCAAGCAC
AACTATCCCCACCGAAACACCAACCGCATACACTCGACGGCAGCGGTGAC
AGGGACATCACAAAGCGAATAAATACAAATGTTATGCATATCACCTTCAT
GTACAGTACGTAGCATCTGTATTTTCTGCTACACCTTGGGTCATTGGAGC
ACTTTTTGGTTCTGTAGTAGTCGTAGTAGAGTCACGGCATCATCCGTGCA
GTTATTATCCAGTGCTCAACTCACGTGCAGCGGCACCCTGCGCTCGCCGT
GGCTTGCTACTCTTGAACGCTTTTTTTTTAGGTTTTACTTGAATATAGAG
TCGAAATGTGTTCCGAAACAATGATGACCACGACGACGACAGCGGCGGCA
ATCCTACCGTACCGAGTACCGCAACTTTTTCTGCCCCACTACAGTAGAGT
CATTTGAAGGCCTTTTTTAGGTTCAATTTCATATTTCGAAAAATGGGTTG
GTGAATCTTGTTATATTTAAACAGCCCAAGCTCCAACAACCGACTCGCTT
CTTTTTCATCTCTCGATCTCTCCCTCTCTTCTTTCTATCGTGAGTCGCTC
GTTCGCCCCCGCTCTCCGTTTTGTTGTGCTTTGACGCTTCCTTTCGACGC
GATGCTTTTGCTGTGTTCAGCTGTGCGGCGTGATGTGCTGCCCGTGTCTA
ATGGGCAGGGACGGCTGGCGAACCGCAAGGAATCTCAACGTCTGGAAGAG
GATTCGTAGACGTGCGTCTGTTATCACCTGCGCCGTTGATATCGCGGTGT
TTTTGATCTCCGTCCTTGTCAACGGTGGCTTCCAGGTGAAAACTGAACTG
ATTGCCTGTGTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGG
TGGTGGTGGTGGTGATGGAACTTTCGTTTTGTGTTGAGCATGTACAGCTA
GATAATGACCCTTATTTTATGCGTACATAGCTCAAAAGCCTTGTCTTCGT
TACGAGCGCTCAGCCCGCTTACCTTCGGATGTAGCTTCAACACAAAAATG
GCGTCTAGCAATTAGAAATGTCGAGAGCGAGCGCTGCAGTCATTTCGGAC
AAAAGTATACCACCAACTACGTGTATACTATGTACTGCCTGTCTTAACAG
CGGGCTCCCTTCCTCCGTAAATCACATACCTGATAGGCGTCGTTTCCTCC
TGTTCTGCGGAGGGGATTAAATAATGACTTTTAATAGATGGGAACCGACG
CTAAACGGAATAGCTCTAACCTTGAATCCGCTAGGCCCGACCCACTACAA
CTTCCATGGCGGTATGGATGAAATGAAGGAAAATAACGTTCAACGAAGTT
GAGGATCGCGTTCGCCAAACGGCCCAGCCCTGGTTGAAGGGTTGGAGACA
TATTTTCCAACCATACCTTACATGATCTTTGGCCGTCTCGCTCCCCGCTC
CCCGCTGTCCTTCTCCCATACTTCGTGCCTGCCGAACGGTGTGTTGACAA
TGTCGCGTCTTGTGACCGTCCGGATAACAGCCCATGTGGGGAAGAAACGA
CGCAAATCCTCTCTTGGGACCTTCGGCGGTGGTGAGCATTTTGGAACATG
GTCTACAAGAAGAATTTGTACACTTTGTTTGGCTTGTATCTTGTTTTCTG
TATGAACGTGTAGTTTAAAAATGAGGGGACTCTTCTGAATGTGTGAGTGT
ATACGCTTCTTTTAGCGTGATTTTTTTCGAATGTCCGAAGTATCGTGAGT
TGAACGAAATCTGACGGGTTGTGGAGAAGGACTCATTTTGTAGCGAAACG
TTGGTGCAGGTGGACTGGGGTCTGGGACCTGCAGCTCACTATGAGCTACA
CAGGACCGAATCGAAATTTACAAAAAAGAAAAAAAAATTCGCCAATACTT
TCATTTTTCATTTAATGTATTTCTTCGACATGGTAATCCAACCACTCAGT
CAGACCCTCGATCTACAAGTATATCAGCATCCATCCTTGGACACCTTTTA
ATTGTTTCCACCATATTATACATGTATGTGTGTATGTATATATACGTAAT
ATGTCGTAAGTACACCCTTTTTTTTTTGGCAGCAAAGATTTTGCGCTTTT
TGCGGTGGATCGACGGGCATAACACCGATGCACTCGTTTACTTTTCCCTA
AGAAAAGAGAAGAACACTTCAGATGATATACCCGAAATTAGATACCAGCT
CATTGGCTGATTCCCTTGCGGATGGCGGTAGACTGGACGTATCTATCCGA
TAGCTGTGAGTTCCTACTGCTGTGGGAAAAAAAAAAAATGTATTTTTTCC
CTTAAAATCTTGTTATCTTGTATTTTTTTTTATCCATGGGTATTTTGTCA
TTATTTACCCACATAAAATCGAAGCAACAGGGAAGTTAAGTCTATGGCAA
ACCCGAAAGCTTGCTGTTTTGGAAAATCTGTCGCAATGCAGACGCTTCTT
TCGCTTGGAGCAAAGCATGTGGGTCTCATCCAGGAGGGACAAGTCTGGAG
GCTGATTACACCGATTCTACTACATGGAGGGGTGCTACACATGATTATGA
ATGTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22410:352..3906-

>mRNA_H-paniculata_contig22410.5967.1 ID=mRNA_H-paniculata_contig22410.5967.1|Name=mRNA_H-paniculata_contig22410.5967.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig22410:352..3906- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCAGATGCTGAGGAGGGAGGGGGTGGTGAAGGGTACGCTGACGACGA
TGGACGGGATAGGGCTGGAGACGAGTACGGGTTTGATATGTTTGATCCGG
TCTGGGGAAAGCCGGATTACCCCCCGAGTCATCAGCCCACCGCTCGCCAG
GATGCAGATGCTGAGGAGGGAGGGGGTGGTGAAGGGTACGCTGACGACGA
TGGACGGGATAGGGCTGGAGACGAGTACGGGTTTGATATGTTTGATCCGG
TCTGGGGAAAGCCGGATTACCCCCCGAGTCATCAGCCCACCGCTCGCCAG
CTGTGCGGCGTGATGTGCTGCCCGTGTCTAATGGGCAGGGACGGCTGGCG
AACCGCAAGGAATCTCAACGTCTGGAAGAGGATTCGTAGACGTGCGTCTG
TTATCACCTGCGCCGTTGATATCGCGGTGTTTTTGATCTCCGTCCTTGTC
AACGGTGGCTTCCAGCTGTGCGGCGTGATGTGCTGCCCGTGTCTAATGGG
CAGGGACGGCTGGCGAACCGCAAGGAATCTCAACGTCTGGAAGAGGATTC
GTAGACGTGCGTCTGTTATCACCTGCGCCGTTGATATCGCGGTGTTTTTG
ATCTCCGTCCTTGTCAACGGTGGCTTCCAGCCCATGTGGGGAAGAAACGA
CGCAAATCCTCTCTTGGGACCTTCGGCGGTGCCCATGTGGGGAAGAAACG
ACGCAAATCCTCTCTTGGGACCTTCGGCGGTGACGCTTCTTTCGCTTGGA
GCAAAGCATGTGGGTCTCATCCAGGAGGGACAAGTCTGGAGGCTGATTAC
ACCGATTCTACTACATGGAGGGGTGCTACACATGATTATGAATGTGACGC
TTCTTTCGCTTGGAGCAAAGCATGTGGGTCTCATCCAGGAGGGACAAGTC
TGGAGGCTGATTACACCGATTCTACTACATGGAGGGGTGCTACACATGAT
TATGAATGTG
back to top