mRNA_H-paniculata_contig22391.5961.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22391.5961.1
Unique NamemRNA_H-paniculata_contig22391.5961.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22391.5961.1 vs. uniprot
Match: D7FR29_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR29_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.090e-23
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   10 QIVEIVDKWEGNLASLMFKHLVPGFWDIWHQLGSPPAEQQPYSVVKRGGGYEIREYAPRLVVK 198
            ++V+I D WEGN  +L  KHLVPGFWDIWHQLGSPPAE+ PY VVKR  GY IREYAPR+  +
Sbjct:   90 KVVKITDTWEGNPVTLGLKHLVPGFWDIWHQLGSPPAEKPPYRVVKRALGYVIREYAPRMATQ 152
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BLAST of mRNA_H-paniculata_contig22391.5961.1 vs. uniprot
Match: A0A6H5L2A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A9_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.670e-23
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:   10 QIVEIVDKWEGNLASLMFKHLVPGFWDIWHQLGSPPAEQQPYSVVKRGGGYEIREYAPRLVVK 198
            ++V+I D WEGN  +L  KHLVPGFWDIWHQLGSPPAE+ PY VVKR  GY IREYAPRL  +
Sbjct:  263 KVVKITDTWEGNPVTLGLKHLVPGFWDIWHQLGSPPAEKPPYRVVKRALGYVIREYAPRLATQ 325
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BLAST of mRNA_H-paniculata_contig22391.5961.1 vs. uniprot
Match: A0A835YSS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSS2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.210e-15
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:   10 QIVEIVDKWEGNLASLMFKHLVPGFWDIWHQLGSPPAEQQPYSVVKRGGGYEIREYAPRLVVK 198
            +I+ + D WE      + +HL+PGFWDIW+Q  SP AE+ P+ V++RG GYE+ ++APRLV++
Sbjct:  131 RIISMEDTWEEAPVQALIRHLLPGFWDIWNQFCSPIAERYPHKVLRRGRGYEVWQFAPRLVLR 193
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BLAST of mRNA_H-paniculata_contig22391.5961.1 vs. uniprot
Match: A0A6V1P7S5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P7S5_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 5.820e-9
Identity = 27/62 (43.55%), Postives = 34/62 (54.84%), Query Frame = 1 
Query:   10 QIVEIVDKWEGNLASLMFKHLVPGFWDIWHQLGSPPAEQQPYSVVKRGGGYEIREYAPRLVV 195
            ++    D WE +   +      P FWD +H    PPAE   Y V  RG GYE+R+YAPRLVV
Sbjct:  175 RLAAAADTWEQSPYQVALGQCRPRFWDFYHFKAFPPAEFPAYRVAARGEGYEVRDYAPRLVV 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22391.5961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FR29_ECTSI1.090e-2368.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2A9_9PHAE1.670e-2369.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YSS2_9STRA7.210e-1547.62Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1P7S5_HETAK5.820e-943.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22391contigH-paniculata_contig22391:535..732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue2.3e-19
Seed eggNOG ortholog2880.D7FR29
Hectar predicted targeting categoryother localisation
EggNOG OGs2C5V8@1,2SB4P@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-09_003730.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size198
Cds size198
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.4833136-CDS-H-paniculata_contig22391:534..7321622929621.4833136-CDS-H-paniculata_contig22391:534..732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22391 535..732 -
1691480938.7775354-CDS-H-paniculata_contig22391:534..7321691480938.7775354-CDS-H-paniculata_contig22391:534..732Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22391 535..732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22391.5961.1prot_H-paniculata_contig22391.5961.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22391 535..732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22391.5961.1

>prot_H-paniculata_contig22391.5961.1 ID=prot_H-paniculata_contig22391.5961.1|Name=mRNA_H-paniculata_contig22391.5961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MTQQIVEIVDKWEGNLASLMFKHLVPGFWDIWHQLGSPPAEQQPYSVVKR
GGGYEIREYAPRLVVK
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mRNA from alignment at H-paniculata_contig22391:535..732-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22391.5961.1 ID=mRNA_H-paniculata_contig22391.5961.1|Name=mRNA_H-paniculata_contig22391.5961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at H-paniculata_contig22391:535..732- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCAACAGATTGTCGAAATCGTGGACAAGTGGGAAGGTAATTTGGC
GAGCCTAATGTTCAAGCACCTCGTCCCCGGATTCTGGGATATCTGGCACC
AGTTGGGGTCGCCACCTGCTGAGCAACAGCCGTACTCCGTCGTGAAGCGA
GGGGGTGGTTACGAGATACGGGAGTACGCGCCGAGGTTGGTGGTGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig22391:535..732-

>mRNA_H-paniculata_contig22391.5961.1 ID=mRNA_H-paniculata_contig22391.5961.1|Name=mRNA_H-paniculata_contig22391.5961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig22391:535..732- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCAACAGATTGTCGAAATCGTGGACAAGTGGGAAGGTAATTTGGC
GAGCCTAATGTTCAAGCACCTCGTCCCCGGATTCTGGGATATCTGGCACC
AGTTGGGGTCGCCACCTGCTGAGCAACAGCCGTACTCCGTCGTGAAGCGA
GGGGGTGGTTACGAGATACGGGAGTACGCGCCGAGGTTGGTGGTGAAGAT
GACGCAACAGATTGTCGAAATCGTGGACAAGTGGGAAGGTAATTTGGCGA
GCCTAATGTTCAAGCACCTCGTCCCCGGATTCTGGGATATCTGGCACCAG
TTGGGGTCGCCACCTGCTGAGCAACAGCCGTACTCCGTCGTGAAGCGAGG
GGGTGGTTACGAGATACGGGAGTACGCGCCGAGGTTGGTGGTGAAG
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