prot_H-paniculata_contig2239.5959.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2239.5959.1
Unique Nameprot_H-paniculata_contig2239.5959.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length72
Homology
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BLAST of mRNA_H-paniculata_contig2239.5959.1 vs. uniprot
Match: D8LL68_ECTSI (Rab geranylgeranyl transferase component A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL68_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.790e-27
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 0 
Query:    1 PVLTLKQDFVAVEGTGGAVWRASIAFARFMCGPMGPRCLPLAGRSVLEISSGLGVGSIVAWHLGASPVVS 70
            P + L QDFV+VEGTGGAVWR SI F+ F+C   G RCLPLAG+SVLEISSGLG+G+IV+W+LGASPVV+
Sbjct:   42 PPVVLNQDFVSVEGTGGAVWRPSIEFSEFVCSEEGRRCLPLAGKSVLEISSGLGLGAIVSWNLGASPVVA 111
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BLAST of mRNA_H-paniculata_contig2239.5959.1 vs. uniprot
Match: A0A835YQC3_9STRA (Rab geranylgeranyl transferase component A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQC3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.170e-13
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 0 
Query:    3 LTLKQDFVAVEGTGGAVWRASIAFARFMCGPMGPRCLPLAGRSVLEISSGLGVGSIVAWHLGASPVVS 70
            LT+ QDF+ +EGTGG VWRAS+  A + C  +      +AG  VLEI +GLG+ +I AWHLGA  VV+
Sbjct:   54 LTIIQDFMGIEGTGGTVWRASVMLAEYCCTHLKDA---MAGAPVLEIGAGLGLVAIAAWHLGALQVVA 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2239.5959.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL68_ECTSI2.790e-2771.43Rab geranylgeranyl transferase component A n=2 Tax... [more]
A0A835YQC3_9STRA1.170e-1351.47Rab geranylgeranyl transferase component A n=1 Tax... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.150coord: 2..70
e-value: 1.7E-10
score: 42.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2239contigH-paniculata_contig2239:217..432 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2239.5959.1mRNA_H-paniculata_contig2239.5959.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2239 217..432 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2239.5959.1 ID=prot_H-paniculata_contig2239.5959.1|Name=mRNA_H-paniculata_contig2239.5959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
PVLTLKQDFVAVEGTGGAVWRASIAFARFMCGPMGPRCLPLAGRSVLEIS
SGLGVGSIVAWHLGASPVVSE*
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