mRNA_H-paniculata_contig2239.5959.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2239.5959.1
Unique NamemRNA_H-paniculata_contig2239.5959.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2239.5959.1 vs. uniprot
Match: D8LL68_ECTSI (Rab geranylgeranyl transferase component A n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL68_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.790e-27
Identity = 50/70 (71.43%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    1 PVLTLKQDFVAVEGTGGAVWRASIAFARFMCGPMGPRCLPLAGRSVLEISSGLGVGSIVAWHLGASPVVS 210
            P + L QDFV+VEGTGGAVWR SI F+ F+C   G RCLPLAG+SVLEISSGLG+G+IV+W+LGASPVV+
Sbjct:   42 PPVVLNQDFVSVEGTGGAVWRPSIEFSEFVCSEEGRRCLPLAGKSVLEISSGLGLGAIVSWNLGASPVVA 111
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BLAST of mRNA_H-paniculata_contig2239.5959.1 vs. uniprot
Match: A0A835YQC3_9STRA (Rab geranylgeranyl transferase component A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQC3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.170e-13
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1 
Query:    7 LTLKQDFVAVEGTGGAVWRASIAFARFMCGPMGPRCLPLAGRSVLEISSGLGVGSIVAWHLGASPVVS 210
            LT+ QDF+ +EGTGG VWRAS+  A + C  +      +AG  VLEI +GLG+ +I AWHLGA  VV+
Sbjct:   54 LTIIQDFMGIEGTGGTVWRASVMLAEYCCTHLKDA---MAGAPVLEIGAGLGLVAIAAWHLGALQVVA 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2239.5959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL68_ECTSI2.790e-2771.43Rab geranylgeranyl transferase component A n=2 Tax... [more]
A0A835YQC3_9STRA1.170e-1351.47Rab geranylgeranyl transferase component A n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2239contigH-paniculata_contig2239:217..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.4263146-CDS-H-paniculata_contig2239:216..4321622929621.4263146-CDS-H-paniculata_contig2239:216..432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2239 217..432 -
1691480938.767301-CDS-H-paniculata_contig2239:216..4321691480938.767301-CDS-H-paniculata_contig2239:216..432Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2239 217..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2239.5959.1prot_H-paniculata_contig2239.5959.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2239 217..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2239.5959.1

>prot_H-paniculata_contig2239.5959.1 ID=prot_H-paniculata_contig2239.5959.1|Name=mRNA_H-paniculata_contig2239.5959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
PVLTLKQDFVAVEGTGGAVWRASIAFARFMCGPMGPRCLPLAGRSVLEIS
SGLGVGSIVAWHLGASPVVSE*
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mRNA from alignment at H-paniculata_contig2239:217..432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2239.5959.1 ID=mRNA_H-paniculata_contig2239.5959.1|Name=mRNA_H-paniculata_contig2239.5959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig2239:217..432- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGTGCTAACATTGAAGCAAGACTTTGTGGCGGTGGAGGGCACTGGCGG
TGCAGTGTGGAGGGCGTCGATAGCGTTCGCCAGGTTCATGTGCGGCCCCA
TGGGCCCGCGGTGTCTTCCGTTAGCCGGTAGATCCGTCCTTGAGATTAGC
TCCGGGTTGGGGGTTGGATCGATCGTGGCGTGGCACCTCGGGGCGTCGCC
TGTGGTGAGTGAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2239:217..432-

>mRNA_H-paniculata_contig2239.5959.1 ID=mRNA_H-paniculata_contig2239.5959.1|Name=mRNA_H-paniculata_contig2239.5959.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig2239:217..432- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGTGCTAACATTGAAGCAAGACTTTGTGGCGGTGGAGGGCACTGGCGG
TGCAGTGTGGAGGGCGTCGATAGCGTTCGCCAGGTTCATGTGCGGCCCCA
TGGGCCCGCGGTGTCTTCCGTTAGCCGGTAGATCCGTCCTTGAGATTAGC
TCCGGGTTGGGGGTTGGATCGATCGTGGCGTGGCACCTCGGGGCGTCGCC
TGTGGTGAGTGAATGACCAGTGCTAACATTGAAGCAAGACTTTGTGGCGG
TGGAGGGCACTGGCGGTGCAGTGTGGAGGGCGTCGATAGCGTTCGCCAGG
TTCATGTGCGGCCCCATGGGCCCGCGGTGTCTTCCGTTAGCCGGTAGATC
CGTCCTTGAGATTAGCTCCGGGTTGGGGGTTGGATCGATCGTGGCGTGGC
ACCTCGGGGCGTCGCCTGTGGTGAGTGAATGA
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