mRNA_H-paniculata_contig2238.5957.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2238.5957.1
Unique NamemRNA_H-paniculata_contig2238.5957.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2238.5957.1 vs. uniprot
Match: D7FPL3_ECTSI (V-type h-atpase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPL3_ECTSI)

HSP 1 Score: 318 bits (816), Expect = 3.750e-104
Identity = 162/186 (87.10%), Postives = 173/186 (93.01%), Query Frame = 3 
Query:  195 TTAVEVLCKLDYCNAGWGEVLTHMSPFGWANMGIGFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQDPAEDPDTYEWTTAYFAAYALFAGGLAVGLTNLASGISVGIAGSSCALADAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFPQV 752
            T++ EV C  D CNAGW EVLTHMSP+GWAN+GIGFALGLSVLGAGWGIFLTGSSIMGAA+KAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQDP ED ++YEWTTA+FA YALF GGL VGLTNLASGISVG+AGS+CAL DAQDASLFVKILIVEIFASALGIFGIIVGIIQSN A+FPQV
Sbjct:    2 TSSTEVFCTNDLCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQDPPEDIESYEWTTAFFAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNVADFPQV 187
[Close]
BLAST of mRNA_H-paniculata_contig2238.5957.1 vs. uniprot
Match: A0A835YTX8_9STRA (V-type h-atpase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTX8_9STRA)

HSP 1 Score: 300 bits (768), Expect = 7.360e-97
Identity = 156/190 (82.11%), Postives = 165/190 (86.84%), Query Frame = 3 
Query:  186 MTGTTAVEVLCKLDYCNAGWGEVLTHMSPFGWANMGIGFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQDPAEDPDT--YEWTTAYFAAYALFAGGLAVGLTNLASGISVGIAGSSCALADAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFPQ 749
            M GT+  EVLC  D+CN GW +VLTHMSPFGWA MGI FALG S++GA WGIF+TGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIIL NKI DP    DT  YEWTTA+FA YALF+ GL VGLTNLASG+SVGIAGSSCALADAQD SLFVKILIVEIFASALGIFGIIVGIIQSNSA FP 
Sbjct:    1 MVGTSPSEVLCSSDHCNQGWPDVLTHMSPFGWAYMGIAFALGFSIVGAAWGIFVTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILLNKISDPPAPADTASYEWTTAFFAGYALFSAGLGVGLTNLASGVSVGIAGSSCALADAQDGSLFVKILIVEIFASALGIFGIIVGIIQSNSAAFPN 190
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BLAST of mRNA_H-paniculata_contig2238.5957.1 vs. uniprot
Match: A0A7S2PCT9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCT9_9STRA)

HSP 1 Score: 268 bits (686), Expect = 1.710e-84
Identity = 135/183 (73.77%), Postives = 157/183 (85.79%), Query Frame = 3 
Query:  216 CKLDYCNAGWGEVLTHMSPFGWANMGIGFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQDPAED-----PDTYEWTTAYFAAYALFAGGLAVGLTNLASGISVGIAGSSCALADAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFPQ 749
            C+  YCN GW EVLTHMSP+GWA+ G+ F LGLSV+GA WGI+LTGSS++GAA+KAPRIRSKNL+SVIFCEATAIYGVIMAIILTNKI+ P +      PD +++   YFA Y +F+ GL+VGLTN+ASGISVGIAGSSCA+ADAQD SLFVKILIVEIFASALGIFGIIVGIIQSN+  FP+
Sbjct:    8 CQSAYCNQGWSEVLTHMSPYGWASFGVAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILTNKIKSPEDGYGNQLPDGWDYNEYYFAGYGMFSAGLSVGLTNIASGISVGIAGSSCAIADAQDPSLFVKILIVEIFASALGIFGIIVGIIQSNACTFPE 190
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BLAST of mRNA_H-paniculata_contig2238.5957.1 vs. uniprot
Match: A0A1Z5KNU3_FISSO (V-type H+-transporting ATPase 21kDa proteolipid subunit n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5KNU3_FISSO)

HSP 1 Score: 267 bits (682), Expect = 6.370e-84
Identity = 136/183 (74.32%), Postives = 161/183 (87.98%), Query Frame = 3 
Query:  213 LCKLDYCNAGWGEVLTHMSPFGWANMGIGFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQDPAEDPDTY-----EWTTAYFAAYALFAGGLAVGLTNLASGISVGIAGSSCALADAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFP 746
            +CK D+CNAGW EVLTHMSP+G+AN G+ F LGLS++GA WGI+LTGSS++GAA+KAPRIRSKNL+SVIFCEATAIYGVIMAIILTNKI++P E  D+Y     ++   Y+A Y +F+ GL+VGLTN+ASG+SVGIAGSSCA+ADAQDASLFVKILIVEIFASALGIFGIIVGIIQSN+  FP
Sbjct:    7 ICKSDFCNAGWAEVLTHMSPYGFANFGVAFGLGLSIVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILTNKIKEP-ELADSYLSANWDFNGFYYAGYGMFSAGLSVGLTNIASGVSVGIAGSSCAIADAQDASLFVKILIVEIFASALGIFGIIVGIIQSNACTFP 188
[Close]
BLAST of mRNA_H-paniculata_contig2238.5957.1 vs. uniprot
Match: B8BS55_THAPS (V-type h-atpase subunit n=5 Tax=Bacillariophyta TaxID=2836 RepID=B8BS55_THAPS)

HSP 1 Score: 264 bits (675), Expect = 6.900e-83
Identity = 134/181 (74.03%), Postives = 154/181 (85.08%), Query Frame = 3 
Query:  216 CKLDYCNAGWGEVLTHMSPFGWANMGIGFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQDPAED----PDTYEWTTAYFAAYALFAGGLAVGLTNLASGISVGIAGSSCALADAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFP 746
            C   YCNAGW EVLTHMSP+G+AN GI F LGLSV+GA WGI+LTGSS++GAA+KAPRIRSKNL+SVIFCEATAIYGVIMAIIL NK++ P E      + ++W   Y+A Y +F+ GL+VGLTN+ASG+SVGIAGSSCA+ DAQDASLFVKILIVEIFASALGIFGIIVGIIQSNS  FP
Sbjct:    6 CYSTYCNAGWSEVLTHMSPYGYANFGIAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILANKVKKPDEAVSQLSENWDWPGYYYAGYGMFSSGLSVGLTNIASGVSVGIAGSSCAIGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSCTFP 186
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BLAST of mRNA_H-paniculata_contig2238.5957.1 vs. uniprot
Match: A0A6U1PSC4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PSC4_9STRA)

HSP 1 Score: 263 bits (673), Expect = 1.330e-82
Identity = 133/182 (73.08%), Postives = 153/182 (84.07%), Query Frame = 3 
Query:  216 CKLDYCNAGWGEVLTHMSPFGWANMGIGFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQDPAED----PDTYEWTTAYFAAYALFAGGLAVGLTNLASGISVGIAGSSCALADAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFPQ 749
            C  ++CN GW EVLT+MSP+GWAN GI   LG SV GA WGI+LTGSS++GAAIKAPRIRSKNL+SVIFCEATAIYGVI+AIIL NK+ +P +     P+ ++W T YFA YA+F  GL+VGLTN+ASG+SVGIAGSSCAL DAQD  LFVKILIVEIFASALGIFGIIVGIIQSNSA FP+
Sbjct:    4 CVGEFCNYGWSEVLTNMSPYGWANFGIAIGLGFSVAGAAWGIWLTGSSLVGAAIKAPRIRSKNLISVIFCEATAIYGVILAIILLNKVVEPEDKSGTFPENWDWNTFYFAGYAVFTSGLSVGLTNIASGVSVGIAGSSCALGDAQDPGLFVKILIVEIFASALGIFGIIVGIIQSNSAAFPE 185
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BLAST of mRNA_H-paniculata_contig2238.5957.1 vs. uniprot
Match: A0A6S8YJQ3_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8YJQ3_9STRA)

HSP 1 Score: 263 bits (672), Expect = 2.380e-82
Identity = 133/182 (73.08%), Postives = 156/182 (85.71%), Query Frame = 3 
Query:  216 CKLDYCNAGWGEVLTHMSPFGWANMGIGFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQDPAED-----PDTYEWTTAYFAAYALFAGGLAVGLTNLASGISVGIAGSSCALADAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFP 746
            C   YCNAGWGE+LTHMSP+G+AN GI F LG SV+GA WGI++TG+S++GAA+KAPRIRSKNLVSVIFCEATAIYGVIMAIIL NKI+ P E      PD +++   Y+A Y +F+ GL+VGLTN+ASG+SVGIAGSSCALADAQD+SLFVKILIVEIFASALGIFGIIVGII+SN+  FP
Sbjct:    7 CTSPYCNAGWGELLTHMSPYGFANFGIAFGLGFSVIGAAWGIWITGTSLVGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILANKIKKPDEGINYQFPDNWDFPGMYYAGYGMFSAGLSVGLTNIASGVSVGIAGSSCALADAQDSSLFVKILIVEIFASALGIFGIIVGIIESNACTFP 188
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BLAST of mRNA_H-paniculata_contig2238.5957.1 vs. uniprot
Match: A0A6T7QKL8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6T7QKL8_9STRA)

HSP 1 Score: 262 bits (670), Expect = 3.880e-82
Identity = 133/182 (73.08%), Postives = 153/182 (84.07%), Query Frame = 3 
Query:  213 LCKLDYCNAGWGEVLTHMSPFGWANMGIGFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQDPAEDPDT----YEWTTAYFAAYALFAGGLAVGLTNLASGISVGIAGSSCALADAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFP 746
            +C   YCN GW EVLTHMSP+G+AN GI F LGLSV+GA WGI+LTGSS++GAA+KAPRIRSKNL+SVIFCEATAIYGVIMAIIL NK++ P E   T    ++W   Y+A Y +F+ GL+VGLTN+ASG+SVGIAGSSCA+ DAQD SLFVKILIVEIFASALGIFGIIVGIIQSNS  FP
Sbjct:    5 VCSSAYCNQGWSEVLTHMSPYGYANFGIAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILANKVKKPEEALSTLGEDWDWAGYYYAGYGMFSSGLSVGLTNIASGVSVGIAGSSCAIGDAQDPSLFVKILIVEIFASALGIFGIIVGIIQSNSCTFP 186
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BLAST of mRNA_H-paniculata_contig2238.5957.1 vs. uniprot
Match: A0A7S3LBA5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBA5_9STRA)

HSP 1 Score: 261 bits (668), Expect = 7.990e-82
Identity = 128/184 (69.57%), Postives = 160/184 (86.96%), Query Frame = 3 
Query:  207 EVLCKLDYCNAGWGEVLTHMSPFGWANMGIGFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQDPAED----PDTYEWTTAYFAAYALFAGGLAVGLTNLASGISVGIAGSSCALADAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFP 746
            ++ C+ ++CN GW +VLTHMSP+G+A+ G+ F LGLS++GA WGI+LTGSS++GAA+KAPRIRSKNL+SVIFCEATAIYGVIMAIILTNKI++P ++     + ++W   Y+A Y +F+ GL+VGLTN+ASG+SVGIAGSSCA+ DAQDASLFVKILIVEIFASALGIFGIIVGIIQSN+  FP
Sbjct:    4 KMTCQSEFCNQGWSDVLTHMSPYGFASFGVAFGLGLSIVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILTNKIKEPEDNGFYLDENWDWAGYYYAGYGMFSAGLSVGLTNIASGVSVGIAGSSCAIGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNACIFP 187
[Close]
BLAST of mRNA_H-paniculata_contig2238.5957.1 vs. uniprot
Match: A0A7S1U6D2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6D2_9STRA)

HSP 1 Score: 260 bits (664), Expect = 2.970e-81
Identity = 134/182 (73.63%), Postives = 154/182 (84.62%), Query Frame = 3 
Query:  216 CKLDYCNAGWGEVLTHMSPFGWANMGIGFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQDPAEDPDT----YEWTTAYFAAYALFAGGLAVGLTNLASGISVGIAGSSCALADAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFPQ 749
            C+ + CN GW EVLTH+SP+ W N+GI F LGLSVLGA WGI++TGSS++GAA+KAPRIRSKNLVSVIFCEATAIYGVI+AIIL N I+DP E   T    ++W T YF+ YA+FA GL VGLTNLASGISVGIAGSSCALADAQ++ LFVK+LIVEIFASALGIFGIIVGII SN A+FP 
Sbjct:    9 CEGELCNKGWEEVLTHISPYWWGNVGIAFGLGLSVLGAAWGIWITGSSLVGAAVKAPRIRSKNLVSVIFCEATAIYGVIIAIILMNHIKDPEEKGYTIQEDWDWNTFYFSGYAVFAAGLGVGLTNLASGISVGIAGSSCALADAQNSDLFVKMLIVEIFASALGIFGIIVGIIMSNDADFPS 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2238.5957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPL3_ECTSI3.750e-10487.10V-type h-atpase subunit n=1 Tax=Ectocarpus silicul... [more]
A0A835YTX8_9STRA7.360e-9782.11V-type h-atpase subunit n=1 Tax=Tribonema minus Ta... [more]
A0A7S2PCT9_9STRA1.710e-8473.77Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Z5KNU3_FISSO6.370e-8474.32V-type H+-transporting ATPase 21kDa proteolipid su... [more]
B8BS55_THAPS6.900e-8374.03V-type h-atpase subunit n=5 Tax=Bacillariophyta Ta... [more]
A0A6U1PSC4_9STRA1.330e-8273.08Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6S8YJQ3_9STRA2.380e-8273.08Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A6T7QKL8_9STRA3.880e-8273.08Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S3LBA5_9STRA7.990e-8269.57Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1U6D2_9STRA2.970e-8173.63Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2238contigH-paniculata_contig2238:7108..13769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.1
Seed ortholog evalue7e-85
Seed eggNOG ortholog2880.D7FPL3
Preferred nameATP6V0B
KEGG rclassRC00002,RC03462
KEGG koko:K03661,ko:K15376
KEGG TC3.A.2.2
KEGG ReactionR09726,R09735
KEGG Pathwayko00190,ko00790,ko01100,ko04142,ko04145,ko04721,ko04727,ko05110,ko05120,ko05152,ko05323,map00190,map00790,map01100,map04142,map04145,map04721,map04727,map05110,map05120,map05152,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000220,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001763,GO:0002009,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007424,GO:0007430,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009888,GO:0009894,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010506,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030139,GO:0030641,GO:0030659,GO:0030666,GO:0030670,GO:0031090,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033177,GO:0033179,GO:0033181,GO:0033572,GO:0034220,GO:0035239,GO:0035295,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045335,GO:0045851,GO:0046961,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.ATP hydrolysis coupled proton transport
EggNOG OGsCOG0636@1,KOG0233@2759
EC2.10.1.1,2.7.7.75
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size1548
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2238.5957.1prot_H-paniculata_contig2238.5957.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2238 7901..13584 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.0950556-UTR-H-paniculata_contig2238:7107..79001622929621.0950556-UTR-H-paniculata_contig2238:7107..7900Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2238 7108..7900 -
1691480938.6071498-UTR-H-paniculata_contig2238:7107..79001691480938.6071498-UTR-H-paniculata_contig2238:7107..7900Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2238 7108..7900 -
1622929621.1379805-UTR-H-paniculata_contig2238:13584..137691622929621.1379805-UTR-H-paniculata_contig2238:13584..13769Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2238 13585..13769 -
1691480938.6367593-UTR-H-paniculata_contig2238:13584..137691691480938.6367593-UTR-H-paniculata_contig2238:13584..13769Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2238 13585..13769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929621.1123285-CDS-H-paniculata_contig2238:7900..81731622929621.1123285-CDS-H-paniculata_contig2238:7900..8173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2238 7901..8173 -
1691480938.6190004-CDS-H-paniculata_contig2238:7900..81731691480938.6190004-CDS-H-paniculata_contig2238:7900..8173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2238 7901..8173 -
1622929621.1264465-CDS-H-paniculata_contig2238:13287..135841622929621.1264465-CDS-H-paniculata_contig2238:13287..13584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2238 13288..13584 -
1691480938.6275728-CDS-H-paniculata_contig2238:13287..135841691480938.6275728-CDS-H-paniculata_contig2238:13287..13584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2238 13288..13584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2238.5957.1

>prot_H-paniculata_contig2238.5957.1 ID=prot_H-paniculata_contig2238.5957.1|Name=mRNA_H-paniculata_contig2238.5957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MTGTTAVEVLCKLDYCNAGWGEVLTHMSPFGWANMGIGFALGLSVLGAGW
GIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQD
PAEDPDTYEWTTAYFAAYALFAGGLAVGLTNLASGISVGIAGSSCALADA
QDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFPQV*
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mRNA from alignment at H-paniculata_contig2238:7108..13769-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2238.5957.1 ID=mRNA_H-paniculata_contig2238.5957.1|Name=mRNA_H-paniculata_contig2238.5957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6662bp|location=Sequence derived from alignment at H-paniculata_contig2238:7108..13769- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTGTAATATTTTCGATTATCCTCATCATAGCCCTGCCTGCCGCTCTTTT
ACGACGGTTTGATATAGTCCTCACAGAGCAGAGCAGAAGCAGTGCATAAT
CGAACTTGATCAACAACCGTCTGAACTCAGACCCAGAGGGAGAGAGGGAG
AGGAGGGCTGTAGTAGTGACCCTGTCTAGTGAACCATGACTGGAACTACG
GCTGTTGAGGTTCTGTGCAAGCTCGACTACTGTAATGCCGGGTGGGGAGA
GGTACTGACTCACATGTCGCCCTTCGGGTGGGCGAACATGGGGATTGGGT
TCGCTCTAGGTCTGTCCGTGCTTGGCGCTGGATGGGGCATCTTCTTGACG
GGTTCCAGCATCATGGGAGCAGCAATCAAGGCCCCCCGCATTCGGTCGAA
GAACTTAGTTAGCGTCATCTTTTGTGAAGCGACGGCTATTTACGGCGTTA
TCATGGCTATTATCCTTACCAACAAGATTCAGGTGAGCTCGTTGTCTTCT
ATCTCCAATTCATTGGAACAGAGATGCTGCTGTGCAAAAGAAAGACTTCG
AAGTTGTTGCAGATCCACATCCGTCGTTGTTCGTTGCCTAACTTTGTCTG
TGCCCCATTATTTAGGTCGGCGCAGCAAGTACACACATACGTAATTTAGC
GGCGCATTTTGCTGAAGGGGGCTGGAATTTTGATCTCAAACGAACTGCTG
CACTGTACTGTCTGTGCGAGCAAAGGAGGCGAGTCATGATATATTGGGAT
ACCTATGCCCATACGATTACACGATAGGGCTGGCAAGAACTGCGGAATGT
TGTGCAATCTGTGAATGCTGTGCATTGGACTCCTGGACCATCGTTGTTTC
GCCTTAAAAAACATCACACGTCCAAAAGTTGTATTTTACTTCATGCGAAG
TGTATTTTTCAGTCGTCGCGCACAGGCCTTATCTTGCACTACACTAAATA
CACCTGAAATGTGTCTGTACAAAGCACGCCTACGTTAGTTCGGGTTTTTG
CAAACGGTCGTTTGAGTAGGTGCTTTGCCATCGAAATCGTCAGCCCAACA
GCCTCATCGCGACTGTTGTCGTTAACTTTACACACATGACTCTCTCTCTC
TCTCTCTCTCTCTCTCTTCGTATCCCGTGCTTTGTCAACAGTTGAATCGC
CTTGTATGAACGAAAAGGAGAAAAAAATGGTGTGAATGAGTGCACCCCAG
GATCGGCTATACAGAAAACAGTTGCATTCCATGTATTTACATGCTGTCTT
TATAGCCTATCGTTGCCCAATATATCGTGAAATTGAGTTGCGTGTGGACT
TGCTCTCTCCTTATTTGATGGAGCAGTTATATCCTGTCGAAGCTCTCTCT
TGTGACATTTCGAAAAAGCTTCCTTCAGTTGAGGTCCCCTGTCAAGAAAA
CGAGAATCCCCGGGAAGCGCCAACCGCACGCTATACCTGTCGCGAGGCCC
ACAGTGCTCGATATGGCCCTGGCTATAGCATCGACGCTACAGGGAACATG
CGATCGAATGCAAAAAAAACAGGAAGTTTTGGGACGCTCAACCTTAACCA
TTTGAATCCCGGGGGCCTAGGCTGTGATGATCTTATGGGATGGCATCATG
TTGGTCTGTCAAGGTCGCCCATGAATTATGTACCAGCATGGCTTGACACA
AATTGAAAAAATGTACTATTAATAATATCTATTTCATCACGTGACCCTTT
CTTCGGAGCGAAAGGAGCCCAAGGTGACCATTTTTATTCCGTTGCATGTC
CACTACTGGTTTGCTCCAGCCGTAACGCCATGTGCTTGATTTGAAGGTAG
TACAACTGACAGACTGCAGTACATGAATTGGTTCCATCAAGCCGGCAGCC
AGCTGGACATGTTGAACAGGATGATACAATCATTCCCTAGAGGTGCTCAC
GGCGAGGCAAGACACTTAATAGTAGGATGAATGCAGTACAGTTGGTACAC
TGCTGCAGAACCATATCTGTACGGTGATGCTGAGTAAATGGCAACATCAC
AGTCAAGTGAGGGAGAGAGGTTGACAGGGACCAACATCTCTCGGGAGTTC
ACTAGTGAACGATAGCCGCGGTGTACATGGCGTCCTTTTATGCACGATGG
TACCCACAGACACAGCAGCAGCCAGCCCACCGTAGTTGTCGCAGTTTCGG
AACATGACAACACGAGTGATAACGTGATCGGTAATTCGGCGTTGGGCTTC
GTTTTGAAAAGGTGTTCTTTCGCTCTAGTTTTTTGTATATCTGGATTCAA
AGGGTTGAACCCCCAGCACGCCGCACGTGTGAAATCCTTAGTGTAGGAGG
TACATATATGATATGCATCAAGTGAAGATACGATTCTCCTGGGAGAGACT
GGTTCTCGAGGGACAACTGGATTGGTTTTGAGTCGTGAGATGTTGTACGG
AGCACGTACTTGATTTTTGTTCTGGATTTGATCAATCGGTCATTTAAATT
ACTGGAAAGGACTAGAAAATGTTCCGATAATGTGATTAAACGCCACCGAT
TGTTGTGTACGGAACCGGGGTCAGGAACGCCAGGAACGTGCTCTACAAAT
TGAGAATATAAAGCTTGAACCATGCACAAGAACACGGACGCTCCAAGTGT
CTCGCTGGGGGCTGAGGGAACCCCATCCCAACCACGCCTATTTCGCCTGC
GTCGCTAGCTCTTATATTCTATTCCCTGGCATTGTTGCAACCTCTGATTC
ATTTAGTAACCTCGAGGCAGAGCACAGGCATATTTCCCCCTTCGAGGTCG
CCACATAAATCATTTAATGGTAGTTGTACCAGGGAAAGAGAGGGGAAGCC
GACCCTACTAATTGCTTTCATTCTCCCCACGAAGAAAACGGGGGCGACGA
TTGAGCTCTGCCCAAACGTAGTGACGGTATGGGGAACGATGAGCGGGGTG
ATGGCATGAGATCACTGTATGTCCCCCAAGCAGAGCAAGGGAGATATTTT
CATTTGTTTCATAAAGTACCAGGAACAAAGTAGAAAATACTGCTTGAAGT
ATGAGTTCATGCCAATGCTCCAAAGTTTGGGGAGAGGTACATAACTGTAG
CAGTATTTTTCAGGTAAAGCTTACATTTTCTTGGTGCACATTTTTCTGTT
CATGTTCTTTTATTAGTCTTACTGATGGCTTTGAACCTGCGGGTGTTCCG
GCCCGAGATATTCCCCAGTTGATTCAGAAATGGGGGCTTTGTGCTTCTAT
GAGAGGAGGGGCGTGTAGCATGTCCTTCATGTACAGCTTTACCTATAGGA
GGTCGGCTACGGTAGGAGAGAGTGTTTAGAAACACGTGTGGAACGATGAA
CCGCTTCGCATAGTGGGTTGAACAAAAATCAAATCAGAACATATACAAAG
GTATTCAATGGCTTGCGTTCATGCATCTCCAAAGGTGCACAAGGCAGGAT
TCGGAAAGGTCGTACTGTTCTAAGGGGGGAATATATATTTTGCCGAGCCA
TTCCCAAGAGCAGCTTAAATGTGATCGAGGGACTTAGCGCTGCCCTTCCC
TCCTGATTTATTTTTGCTCATAAGAATAAACAACTAAAGGTTGAAGTTAA
TTCATAAAATCAACATAGCTACAACGAAGTTATGATATGAGCTTCAGAGC
CCGGATCTCTAATTCAACTAACTACAGGGTTGACTTGTGAACAAGACTTT
TCGAGGGTGTCTGTCGTTCATGTGGAAACTATCATGCCTAACCTGACGGC
ATATATACGAGTAATACAGTGATACTCCCTCGTGATGGTTACCGTAGCCC
ATGCCGTGCGGGGTCGAAGAGGTCCGTGAAGTCGTGGTACTCGGTCATGA
TGAGGTCAGAATTTGATGTGATGTGAACAGGATCTTCTCGGTCTACCAAG
CAGCATACAATCAAATATCTGTCGACTCCGGCCGAATTTGCTTTCATCTG
GTGGGCATGCCTTACCCCCCCCCTGCCGTAGCCTTACGTTAAGACCTTCT
GCCCTCTGACCGCAGGTCTCAGCGATTGGGCGTGAGTGAAAGTGGGGAAA
ATGTTTGTGCTCTCTATATGAGTTTTATTGAGTACGAATAAGACATTTTT
TTTGCAACTACTGTACGCACGATGCAACGGCTGCTTTGTTATTTTATACG
TTCCTGCCTTCGCCTGTCATTACCAAAAGGCACCGTATGTAATAACTCTG
TTGATATCGACTGCAGCTCCTTGTCTGCACACCGCAATGATCAATTGTAG
TCGGTTGTACTCTTGCGCCGTTAAGAAGCAGCATTGTTTTGCCTGGAGTA
GGCCGTCCTCTCCTATTTTAACATATGCATGCACACCCTTTTGCTCTATC
CTCCGTGTCCATCGCAAGAGAGACCTGGGCACTTACGGCAGCAGTTTGAG
TGGAAAATGAGGAAGTTTTCCCTACGATTGTACAGAAACACCCGCCCCCG
ACCGTTACAGACAATACCCTACTTGCTTCTATGGATTTGGTGGCAAAGCC
TGGTGGATTGGCTGATTCTGACGGCCGGACGGATTTATAAATGTTGTAGA
CACTTGATGCCCCCCTGCTGCGATTTTTTTATCCGCCCTCGAAAAGTGTG
TGAGTTTTTCGGAGGTTCGCGTGTTGAACACGCCCCTGCACCTCCCCCTG
AGGTGCGTAAATCTCTCTTGTCTCTGCTCCGTACGGATACAAGGACTGTC
GCTTAGGTTTATTTTGGCAAAAGGGGATAACACGTGACAACCTATTTGGA
AGTCGCAAATTGTCACTGACCTGAAGGGTGCGCGTGGTTCTGTTTTCTAC
TTGGTCTGGCACATCTCGCAAACGCCACGTTGACCTTTAGATTGGATACG
ACTCGTCATAATCGGATACATGTCTAGACACTTGGACTCACACGGAACAA
ACTACACCTCTCTACTGCTGATGCTTTTCGACTAAGGAACGCGGAAGGAT
TCCTGACCACGATTACGTATCGACTGTAGGAGGAGCGTCGCCTGAAAGTT
TCTCCATCGAAAGCTCAAATCGCCGTGTCTTGATATGCTGGAGCGCTACA
ACACACAATATCCTAACAAACAACTGGAGCAGCAGGTGATAGGTTTATAC
TGCGAGTATATACACATCACAGCAGCAGTTCCACACCCTGAAATTTACAA
AAGAAACAACTGTTCTCTATGTCAAACCGCGTTTTCCCCCTCTAAATACT
GTAATTAAATCAACAGCACACCGTCACTAGTGACCGCTGATTACAGCTCC
TAGGGTCAACCTGCACCGCACGACTGTTTATCCTGGTGTTAGCCAAACAA
ACGGTTTGCTGCCGTCGTGGGTTACCATCCCCAACCGTACCTCACGTTCG
AGCCACCCATCTGTTGCTCTCGCAGCAACTCCGAGAGGCCGCTGTTTTAC
AGCATGCCAGCACACTCGAGAAATTACTGCGTTTTTGTGTGCGTACGATA
GGGTAGATGAAATGAAATAGCGCCCCATCAGCAAGGAAAGGTGAAATCAC
GGCAAAAACAGGCCGATTGAGTACTCTGTAAAAAGCATCGCTTGGACATG
AAAAACGTAACTTATCGTGATATTCCGGCATCACACGCTGGCCCCTTTGC
CAGACCGACTTAACCTAAACATAACCCACACATTAATCTTCTGCAGGACC
CGGCGGAAGACCCGGACACATACGAGTGGACGACTGCCTACTTTGCGGCA
TACGCGCTCTTCGCCGGGGGGCTGGCGGTGGGACTGACCAACTTGGCAAG
CGGGATCTCCGTGGGCATCGCTGGGAGCAGCTGTGCTCTCGCAGACGCGC
AGGACGCTTCGCTCTTCGTGAAAATTCTCATCGTTGAGATTTTTGCGTCC
GCCCTGGGAATCTTCGGTATCATTGTGGGAATCATTCAGTCGAACTCTGC
CGAGTTTCCTCAAGTATAATTTGGAAGTCGTTATTTAGTAGCATATTCTA
GACCCCCTGCCCCGAGGGGATTTATTTCTCGTACTCTTCGTTGAATGTAT
GTTTTTTGGTCCCCTTGTGAACCGTGAGAGGTAGGGTACATGAAAATGGG
TGGAACTCGCCGTGACTTTTGTCTGTTATTTTTATCGCGGGTAGTCGAAA
TTGATTTGATTTGGTCCGAATGGGCTTTCGGGGGCCATCGTTGTTTGGTC
CGAGTCGTGTCGTGGGCATGGTTTCCAAGAATGCGGTGGTGAAGGTCGAC
AGTATCGACCGGTTAATTTAGAATCTGTCCGCGGGCTGTTGTAATTGGGG
CCTCCTTGTTCGTTTGCCCTGCGGAGGGGGTGTGAATGAAATTATCTCCA
ACGAAAGAAAATATTTCCCGTTTGATTTCTCCTCATGTACGTGCTGTTGT
GCGTTCCCCGGGCGTATGGCAGCTCTCATTCCTTCGCCTGCGCGAGAGGA
AAGCGAGGCGTTGCGTTGGATTCAGTGTGTGTCCGAAAACCTGTACCATA
GTGTTAATGAGCTTCAACGCCGTGACTGGCTTCAGGTCAAGAGTCCGCCC
CCTACGGTTTTCGTGATTGGGTGAATTGCCTTGCGCAAATACACGCCTAT
ATAATGAGAGAGCAGTGACTGCGGCAGACCAGATTAATGGTGTTAAGCCA
ACAATGGAATCAAAGTACACAACGGCCGTACAGAACCCTTGGGAACAAAC
TTGTAGGGCACCTTTTTTCTGTGCGGATTAAATCCATCCGCTCGGCATAT
TCATGACGAACC
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Coding sequence (CDS) from alignment at H-paniculata_contig2238:7108..13769-

>mRNA_H-paniculata_contig2238.5957.1 ID=mRNA_H-paniculata_contig2238.5957.1|Name=mRNA_H-paniculata_contig2238.5957.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig2238:7108..13769- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGGAACTACGGCTGTTGAGGTTCTGTGCAAGCTCGACTACTGTAA
TGCCGGGTGGGGAGAGGTACTGACTCACATGTCGCCCTTCGGGTGGGCGA
ACATGGGGATTGGGTTCGCTCTAGGTCTGTCCGTGCTTGGCGCTGGATGG
GGCATCTTCTTGACGGGTTCCAGCATCATGGGAGCAGCAATCAAGGCCCC
CCGCATTCGGTCGAAGAACTTAGTTAGCGTCATCTTTTGTGAAGCGACGG
CTATTTACGGCGTTATCATGGCTATTATCCTTACCAACAAGATTCAGATG
ACTGGAACTACGGCTGTTGAGGTTCTGTGCAAGCTCGACTACTGTAATGC
CGGGTGGGGAGAGGTACTGACTCACATGTCGCCCTTCGGGTGGGCGAACA
TGGGGATTGGGTTCGCTCTAGGTCTGTCCGTGCTTGGCGCTGGATGGGGC
ATCTTCTTGACGGGTTCCAGCATCATGGGAGCAGCAATCAAGGCCCCCCG
CATTCGGTCGAAGAACTTAGTTAGCGTCATCTTTTGTGAAGCGACGGCTA
TTTACGGCGTTATCATGGCTATTATCCTTACCAACAAGATTCAGGACCCG
GCGGAAGACCCGGACACATACGAGTGGACGACTGCCTACTTTGCGGCATA
CGCGCTCTTCGCCGGGGGGCTGGCGGTGGGACTGACCAACTTGGCAAGCG
GGATCTCCGTGGGCATCGCTGGGAGCAGCTGTGCTCTCGCAGACGCGCAG
GACGCTTCGCTCTTCGTGAAAATTCTCATCGTTGAGATTTTTGCGTCCGC
CCTGGGAATCTTCGGTATCATTGTGGGAATCATTCAGTCGAACTCTGCCG
AGTTTCCTCAAGTATAAGACCCGGCGGAAGACCCGGACACATACGAGTGG
ACGACTGCCTACTTTGCGGCATACGCGCTCTTCGCCGGGGGGCTGGCGGT
GGGACTGACCAACTTGGCAAGCGGGATCTCCGTGGGCATCGCTGGGAGCA
GCTGTGCTCTCGCAGACGCGCAGGACGCTTCGCTCTTCGTGAAAATTCTC
ATCGTTGAGATTTTTGCGTCCGCCCTGGGAATCTTCGGTATCATTGTGGG
AATCATTCAGTCGAACTCTGCCGAGTTTCCTCAAGTATAA
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