mRNA_H-paniculata_contig2237.5955.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2237.5955.1
Unique NamemRNA_H-paniculata_contig2237.5955.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2237.5955.1 vs. uniprot
Match: D7G2Y7_ECTSI (Similar to TNF receptor associated factor 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y7_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 1.090e-13
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:   10 RGPAGVLLARRGRGRTLLQQSERSKARAQAEKALRDEEARLALLEEQRVSQEILAAK 180
            RGPAGV+L RR RGRT LQ +ERS  RA+AEKALR+EEARLAL+E Q+VSQE+ AAK
Sbjct:  119 RGPAGVMLVRRERGRTALQVAERSAKRAKAEKALREEEARLALVEAQKVSQELQAAK 175
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BLAST of mRNA_H-paniculata_contig2237.5955.1 vs. uniprot
Match: A0A6H5L922_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L922_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 3.970e-8
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:   28 LLARRGRGRTLLQQSERSKARAQAEKALRDEEARLALLEEQRVSQEILAAK 180
            +L RR RG T LQ +ERS  RA+AEKALR+EEARLAL+E Q+VSQE+ AAK
Sbjct:    1 MLMRRERGCTALQVAERSAKRAKAEKALREEEARLALVEAQKVSQELQAAK 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2237.5955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2Y7_ECTSI1.090e-1373.68Similar to TNF receptor associated factor 4 n=1 Ta... [more]
A0A6H5L922_9PHAE3.970e-868.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2237contigH-paniculata_contig2237:2050..3046 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size247
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.9055748-CDS-H-paniculata_contig2237:2050..21431622929620.9055748-CDS-H-paniculata_contig2237:2050..2143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2237 2051..2143 -
1691480938.5696158-CDS-H-paniculata_contig2237:2050..21431691480938.5696158-CDS-H-paniculata_contig2237:2050..2143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2237 2051..2143 -
1622929620.9195108-CDS-H-paniculata_contig2237:2893..30461622929620.9195108-CDS-H-paniculata_contig2237:2893..3046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2237 2894..3046 -
1691480938.5785873-CDS-H-paniculata_contig2237:2893..30461691480938.5785873-CDS-H-paniculata_contig2237:2893..3046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2237 2894..3046 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2237.5955.1prot_H-paniculata_contig2237.5955.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2237 2051..3046 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2237.5955.1

>prot_H-paniculata_contig2237.5955.1 ID=prot_H-paniculata_contig2237.5955.1|Name=mRNA_H-paniculata_contig2237.5955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
KPYRGPAGVLLARRGRGRTLLQQSERSKARAQAEKALRDEEARLALLEEQ
RVSQEILAAKLSAKAKKKSEKKRENSRKNQSR
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mRNA from alignment at H-paniculata_contig2237:2050..3046-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2237.5955.1 ID=mRNA_H-paniculata_contig2237.5955.1|Name=mRNA_H-paniculata_contig2237.5955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=997bp|location=Sequence derived from alignment at H-paniculata_contig2237:2050..3046- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACCGTACAGGGGACCAGCCGGCGTTCTTCTCGCAAGAAGGGGACGCGG
CCGAACCTTACTGCAACAGTCCGAGCGATCCAAAGCCAGAGCACAAGCGG
AAAAGGCTCTTCGAGATGAGGAGGCCAGGCTGGCGCTACTCGAAGAGCAG
CGGGCAAGTGGCCAATTATCTACACGTACAGTACAGTTGAATCCCCACGT
CAAGTTCCCACTTTTTGTCCCTTTGAGCACGTTTTCAGAGGATACTCGGA
ACAGAATGGGAAGCTGACAATACTGCATAGGTGTGCAGTATTGCAGTTGT
TGGGTGCTGCACCCTATCAACTCCCTGTTTTCTGTGCTGCCTGTATTCCC
TGTCCGTTCTGGACTAGTTGTGTGAACAGCGGCGCCTTCCTCTCCCCGTA
ACCATGCCATAGGCCTTAGGTGTTGCTTTTACCTGCTCTCTGTTTTCAGG
TGATGGGGTGGAGACGGGCATCCGCAGGGTTAAGGCCAGTAGTGTGCGTC
GAAGATTATGGTGCATCACCGCAAAGACTCTGTCGTGATTGCGTTCCCTA
GGGATTTCCTAAACTCTATTAATGTTAAATTAGGGTTACGGTTTTTTGCA
CTTCTGAGGCAAACGTTTTCGTGGCTGAGCCTTAACCTAGCGATGTGAGC
ATCGCTGTATGTTCACTAAGTGAAGAAATAATACTATTGCATAATATACA
CACAACACAGCCGGGTGTTGACAGTAGAATGGTGATCACGTATTTTTATT
TTCTACCATCAGTTGCCCGACCTATTAGATGTCGACTCGAGGACGGAGTT
ATTCGAAGGCCGCTCACTCACCTCTACACTTCTTCGCTTTCTTGCTTCCT
TGGTGCTTTTTCCCGGCTTTCTTTTTCTCGATTTATATCTTGTTCTTGCT
CAGGTGAGCCAGGAGATCCTCGCCGCTAAATTGTCCGCTAAAGCGAAGAA
GAAAAGCGAAAAAAAGCGAGAAAATAGCCGCAAGAACCAATCGAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2237:2050..3046-

>mRNA_H-paniculata_contig2237.5955.1 ID=mRNA_H-paniculata_contig2237.5955.1|Name=mRNA_H-paniculata_contig2237.5955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig2237:2050..3046- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACCGTACAGGGGACCAGCCGGCGTTCTTCTCGCAAGAAGGGGACGCGG
CCGAACCTTACTGCAACAGTCCGAGCGATCCAAAGCCAGAGCACAAGCGG
AAAAGGCTCTTCGAGATGAGGAGGCCAGGCTGGCGCTACTCGAAGAGCAG
CGGAAACCGTACAGGGGACCAGCCGGCGTTCTTCTCGCAAGAAGGGGACG
CGGCCGAACCTTACTGCAACAGTCCGAGCGATCCAAAGCCAGAGCACAAG
CGGAAAAGGCTCTTCGAGATGAGGAGGCCAGGCTGGCGCTACTCGAAGAG
CAGCGGGTGAGCCAGGAGATCCTCGCCGCTAAATTGTCCGCTAAAGCGAA
GAAGAAAAGCGAAAAAAAGCGAGAAAATAGCCGCAAGAACCAATCGAGGG
TGAGCCAGGAGATCCTCGCCGCTAAATTGTCCGCTAAAGCGAAGAAGAAA
AGCGAAAAAAAGCGAGAAAATAGCCGCAAGAACCAATCGAGG
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