prot_H-paniculata_contig22362.5953.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig22362.5953.1
Unique Nameprot_H-paniculata_contig22362.5953.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length48
Homology
BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: D1J798_ECTSI (Cytochrome b6 n=62 Tax=Stramenopiles TaxID=33634 RepID=D1J798_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.210e-22
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 0
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 47
            LRGGVSVGQ+TLTRFYSAHTFVLPL+AAALMITHFLMIRKQGISGPL
Sbjct:  169 LRGGVSVGQSTLTRFYSAHTFVLPLVAAALMITHFLMIRKQGISGPL 215          
BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: Q9X3F9_9CYAN (Cytochrome b (Fragment) n=1 Tax=Prochlorococcus sp. TaxID=1220 RepID=Q9X3F9_9CYAN)

HSP 1 Score: 88.2 bits (217), Expect = 3.150e-22
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 47
            LRGG SVGQ+TLTRFYSAHTFVLPL AA LM+THFLMIRKQGISGPL
Sbjct:    1 LRGGXSVGQSTLTRFYSAHTFVLPLAAAVLMLTHFLMIRKQGISGPL 47          
BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: Q9X3F1_9CYAN (Cytochrome b (Fragment) n=1 Tax=Prochlorococcus sp. TaxID=1220 RepID=Q9X3F1_9CYAN)

HSP 1 Score: 89.0 bits (219), Expect = 9.670e-22
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 0
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 47
            LRGGVS GQ+TLTRFYSAHTFVLP+ AAALM+THFLMIRKQGISGPL
Sbjct:   70 LRGGVSAGQSTLTRFYSAHTFVLPVAAAALMLTHFLMIRKQGISGPL 116          
BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: A0A2F0AJX2_9PROT (Cytochrome b6 (Fragment) n=1 Tax=Pelagibacterales bacterium TaxID=2026776 RepID=A0A2F0AJX2_9PROT)

HSP 1 Score: 89.4 bits (220), Expect = 2.200e-21
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 0
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 47
            LRGGVSVGQ+TLTRFYSAHTFVLP++AA LM+THF+MIRKQGISGPL
Sbjct:  115 LRGGVSVGQSTLTRFYSAHTFVLPVVAAVLMLTHFVMIRKQGISGPL 161          
BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: J9QUX6_9STRA (Cytochrome b6 n=2 Tax=Pelagomonadales TaxID=54409 RepID=J9QUX6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.680e-21
Identity = 42/47 (89.36%), Postives = 47/47 (100.00%), Query Frame = 0
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 47
            LRGGVSVGQ+TLTRFYSAHTFVLP++AAALM+THFLMIR+QGISGPL
Sbjct:  169 LRGGVSVGQSTLTRFYSAHTFVLPVVAAALMLTHFLMIRQQGISGPL 215          
BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: K0S4J8_THAOC (CYTB_NTER domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S4J8_THAOC)

HSP 1 Score: 86.7 bits (213), Expect = 4.590e-21
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 47
            LRGG SVGQ+TLTRFYSAHTFVLP+ AA LM+THFLMIRKQGISGPL
Sbjct:   50 LRGGESVGQSTLTRFYSAHTFVLPVAAAVLMLTHFLMIRKQGISGPL 96          
BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: CYB6_EMIHU (Cytochrome b6 n=10 Tax=cellular organisms TaxID=131567 RepID=CYB6_EMIHU)

HSP 1 Score: 89.4 bits (220), Expect = 7.510e-21
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 0
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 47
            LRGGVSVGQ+TLTRFYSAHTFVLP++AA LM+THF+MIRKQGISGPL
Sbjct:  169 LRGGVSVGQSTLTRFYSAHTFVLPVVAAVLMLTHFVMIRKQGISGPL 215          
BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: A0A0D3M5L9_9STRA (Cytochrome b6 n=19 Tax=Ochrophyta TaxID=2696291 RepID=A0A0D3M5L9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.100e-20
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 47
            LRGGVSVGQ TLTRFYS HTFVLPL+AA LM+THFLMIRKQGISGPL
Sbjct:  169 LRGGVSVGQATLTRFYSLHTFVLPLLAAVLMLTHFLMIRKQGISGPL 215          
BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: CYB6_THAPS (Cytochrome b6 n=103 Tax=cellular organisms TaxID=131567 RepID=CYB6_THAPS)

HSP 1 Score: 87.8 bits (216), Expect = 2.970e-20
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 47
            LRGG SVGQ+TLTRFYSAHTFVLPL AA LM+THFLMIRKQGISGPL
Sbjct:  169 LRGGESVGQSTLTRFYSAHTFVLPLAAAVLMLTHFLMIRKQGISGPL 215          
BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: A0A516ZA38_9STRA (Cytochrome b6 n=4 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA38_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.320e-20
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 0
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 47
            LRGGVSVGQ+TLTRFYSAHTF+LP+ A  LM+THFLMIRKQGISGPL
Sbjct:  180 LRGGVSVGQSTLTRFYSAHTFILPVAAVVLMLTHFLMIRKQGISGPL 226          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J798_ECTSI1.210e-2295.74Cytochrome b6 n=62 Tax=Stramenopiles TaxID=33634 R... [more]
Q9X3F9_9CYAN3.150e-2289.36Cytochrome b (Fragment) n=1 Tax=Prochlorococcus sp... [more]
Q9X3F1_9CYAN9.670e-2289.36Cytochrome b (Fragment) n=1 Tax=Prochlorococcus sp... [more]
A0A2F0AJX2_9PROT2.200e-2187.23Cytochrome b6 (Fragment) n=1 Tax=Pelagibacterales ... [more]
J9QUX6_9STRA2.680e-2189.36Cytochrome b6 n=2 Tax=Pelagomonadales TaxID=54409 ... [more]
K0S4J8_THAOC4.590e-2187.23CYTB_NTER domain-containing protein (Fragment) n=1... [more]
CYB6_EMIHU7.510e-2187.23Cytochrome b6 n=10 Tax=cellular organisms TaxID=13... [more]
A0A0D3M5L9_9STRA2.100e-2089.36Cytochrome b6 n=19 Tax=Ochrophyta TaxID=2696291 Re... [more]
CYB6_THAPS2.970e-2089.36Cytochrome b6 n=103 Tax=cellular organisms TaxID=1... [more]
A0A516ZA38_9STRA7.320e-2085.11Cytochrome b6 n=4 Tax=Dictyochophyceae TaxID=39119... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005797Cytochrome b/b6, N-terminalPFAMPF00033Cytochrome_Bcoord: 1..42
e-value: 2.8E-12
score: 46.9
IPR005797Cytochrome b/b6, N-terminalPROSITEPS51002CYTB_NTERcoord: 1..47
score: 9.579
IPR027387Cytochrome b/b6-like domain superfamilyGENE3D1.20.810.10coord: 1..47
e-value: 3.6E-14
score: 54.2
IPR023530Cytochrome b6, PetBPANTHERPTHR19271:SF8CYTOCHROME B6coord: 1..47
NoneNo IPR availablePANTHERPTHR19271CYTOCHROME Bcoord: 1..47
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..47
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..38
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
IPR016174Di-haem cytochrome, transmembraneSUPERFAMILY81342Transmembrane di-heme cytochromescoord: 1..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22362contigH-paniculata_contig22362:2261..2404 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22362.5953.1mRNA_H-paniculata_contig22362.5953.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig22362 2261..2404 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig22362.5953.1 ID=prot_H-paniculata_contig22362.5953.1|Name=mRNA_H-paniculata_contig22362.5953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005797Cyt_b/b6_N
IPR027387Cytb/b6-like_sf
IPR023530Cyt_B6_PetB
IPR016174Di-haem_cyt_TM