mRNA_H-paniculata_contig22362.5953.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22362.5953.1
Unique NamemRNA_H-paniculata_contig22362.5953.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: D1J798_ECTSI (Cytochrome b6 n=62 Tax=Stramenopiles TaxID=33634 RepID=D1J798_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.210e-22
Identity = 45/47 (95.74%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 141
            LRGGVSVGQ+TLTRFYSAHTFVLPL+AAALMITHFLMIRKQGISGPL
Sbjct:  169 LRGGVSVGQSTLTRFYSAHTFVLPLVAAALMITHFLMIRKQGISGPL 215
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BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: Q9X3F9_9CYAN (Cytochrome b (Fragment) n=1 Tax=Prochlorococcus sp. TaxID=1220 RepID=Q9X3F9_9CYAN)

HSP 1 Score: 88.2 bits (217), Expect = 3.150e-22
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 141
            LRGG SVGQ+TLTRFYSAHTFVLPL AA LM+THFLMIRKQGISGPL
Sbjct:    1 LRGGXSVGQSTLTRFYSAHTFVLPLAAAVLMLTHFLMIRKQGISGPL 47
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BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: Q9X3F1_9CYAN (Cytochrome b (Fragment) n=1 Tax=Prochlorococcus sp. TaxID=1220 RepID=Q9X3F1_9CYAN)

HSP 1 Score: 89.0 bits (219), Expect = 9.670e-22
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 141
            LRGGVS GQ+TLTRFYSAHTFVLP+ AAALM+THFLMIRKQGISGPL
Sbjct:   70 LRGGVSAGQSTLTRFYSAHTFVLPVAAAALMLTHFLMIRKQGISGPL 116
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BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: A0A2F0AJX2_9PROT (Cytochrome b6 (Fragment) n=1 Tax=Pelagibacterales bacterium TaxID=2026776 RepID=A0A2F0AJX2_9PROT)

HSP 1 Score: 89.4 bits (220), Expect = 2.200e-21
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 141
            LRGGVSVGQ+TLTRFYSAHTFVLP++AA LM+THF+MIRKQGISGPL
Sbjct:  115 LRGGVSVGQSTLTRFYSAHTFVLPVVAAVLMLTHFVMIRKQGISGPL 161
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BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: J9QUX6_9STRA (Cytochrome b6 n=2 Tax=Pelagomonadales TaxID=54409 RepID=J9QUX6_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.680e-21
Identity = 42/47 (89.36%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 141
            LRGGVSVGQ+TLTRFYSAHTFVLP++AAALM+THFLMIR+QGISGPL
Sbjct:  169 LRGGVSVGQSTLTRFYSAHTFVLPVVAAALMLTHFLMIRQQGISGPL 215
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BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: K0S4J8_THAOC (CYTB_NTER domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S4J8_THAOC)

HSP 1 Score: 86.7 bits (213), Expect = 4.590e-21
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 141
            LRGG SVGQ+TLTRFYSAHTFVLP+ AA LM+THFLMIRKQGISGPL
Sbjct:   50 LRGGESVGQSTLTRFYSAHTFVLPVAAAVLMLTHFLMIRKQGISGPL 96
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BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: CYB6_EMIHU (Cytochrome b6 n=10 Tax=cellular organisms TaxID=131567 RepID=CYB6_EMIHU)

HSP 1 Score: 89.4 bits (220), Expect = 7.510e-21
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 141
            LRGGVSVGQ+TLTRFYSAHTFVLP++AA LM+THF+MIRKQGISGPL
Sbjct:  169 LRGGVSVGQSTLTRFYSAHTFVLPVVAAVLMLTHFVMIRKQGISGPL 215
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BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: A0A0D3M5L9_9STRA (Cytochrome b6 n=19 Tax=Ochrophyta TaxID=2696291 RepID=A0A0D3M5L9_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.100e-20
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 141
            LRGGVSVGQ TLTRFYS HTFVLPL+AA LM+THFLMIRKQGISGPL
Sbjct:  169 LRGGVSVGQATLTRFYSLHTFVLPLLAAVLMLTHFLMIRKQGISGPL 215
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BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: CYB6_THAPS (Cytochrome b6 n=103 Tax=cellular organisms TaxID=131567 RepID=CYB6_THAPS)

HSP 1 Score: 87.8 bits (216), Expect = 2.970e-20
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 141
            LRGG SVGQ+TLTRFYSAHTFVLPL AA LM+THFLMIRKQGISGPL
Sbjct:  169 LRGGESVGQSTLTRFYSAHTFVLPLAAAVLMLTHFLMIRKQGISGPL 215
[Close]
BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Match: A0A516ZA38_9STRA (Cytochrome b6 n=4 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA38_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.320e-20
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    1 LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL 141
            LRGGVSVGQ+TLTRFYSAHTF+LP+ A  LM+THFLMIRKQGISGPL
Sbjct:  180 LRGGVSVGQSTLTRFYSAHTFILPVAAVVLMLTHFLMIRKQGISGPL 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22362.5953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J798_ECTSI1.210e-2295.74Cytochrome b6 n=62 Tax=Stramenopiles TaxID=33634 R... [more]
Q9X3F9_9CYAN3.150e-2289.36Cytochrome b (Fragment) n=1 Tax=Prochlorococcus sp... [more]
Q9X3F1_9CYAN9.670e-2289.36Cytochrome b (Fragment) n=1 Tax=Prochlorococcus sp... [more]
A0A2F0AJX2_9PROT2.200e-2187.23Cytochrome b6 (Fragment) n=1 Tax=Pelagibacterales ... [more]
J9QUX6_9STRA2.680e-2189.36Cytochrome b6 n=2 Tax=Pelagomonadales TaxID=54409 ... [more]
K0S4J8_THAOC4.590e-2187.23CYTB_NTER domain-containing protein (Fragment) n=1... [more]
CYB6_EMIHU7.510e-2187.23Cytochrome b6 n=10 Tax=cellular organisms TaxID=13... [more]
A0A0D3M5L9_9STRA2.100e-2089.36Cytochrome b6 n=19 Tax=Ochrophyta TaxID=2696291 Re... [more]
CYB6_THAPS2.970e-2089.36Cytochrome b6 n=103 Tax=cellular organisms TaxID=1... [more]
A0A516ZA38_9STRA7.320e-2085.11Cytochrome b6 n=4 Tax=Dictyochophyceae TaxID=39119... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22362contigH-paniculata_contig22362:2261..2404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue6e-17
Seed eggNOG ortholog2880.D1J798
Preferred namepetB
KEGG koko:K00412,ko:K02635,ko:K02705
KEGG Pathwayko00190,ko00195,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map00195,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152,M00161,M00162
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.electron transfer activity
EggNOG OGsCOG1290@1,KOG4663@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko03029
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.8225198-CDS-H-paniculata_contig22362:2260..24041622929620.8225198-CDS-H-paniculata_contig22362:2260..2404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22362 2261..2404 -
1691480938.544625-CDS-H-paniculata_contig22362:2260..24041691480938.544625-CDS-H-paniculata_contig22362:2260..2404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22362 2261..2404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22362.5953.1prot_H-paniculata_contig22362.5953.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22362 2261..2404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22362.5953.1

>prot_H-paniculata_contig22362.5953.1 ID=prot_H-paniculata_contig22362.5953.1|Name=mRNA_H-paniculata_contig22362.5953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
LRGGVSVGQNTLTRFYSAHTFVLPLIAAALMITHFLMIRKQGISGPL*
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mRNA from alignment at H-paniculata_contig22362:2261..2404-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22362.5953.1 ID=mRNA_H-paniculata_contig22362.5953.1|Name=mRNA_H-paniculata_contig22362.5953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at H-paniculata_contig22362:2261..2404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACGTGGAGGAGTAAGTGTAGGTCAAAATACTTTAACACGTTTTTATAG
TGCGCACACATTTGTATTACCTTTGATTGCAGCTGCTTTAATGATTACAC
ACTTTTTAATGATTAGAAAACAGGGTATTTCTGGTCCTTTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig22362:2261..2404-

>mRNA_H-paniculata_contig22362.5953.1 ID=mRNA_H-paniculata_contig22362.5953.1|Name=mRNA_H-paniculata_contig22362.5953.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig22362:2261..2404- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACGTGGAGGAGTAAGTGTAGGTCAAAATACTTTAACACGTTTTTATAG
TGCGCACACATTTGTATTACCTTTGATTGCAGCTGCTTTAATGATTACAC
ACTTTTTAATGATTAGAAAACAGGGTATTTCTGGTCCTTTATAATTACGT
GGAGGAGTAAGTGTAGGTCAAAATACTTTAACACGTTTTTATAGTGCGCA
CACATTTGTATTACCTTTGATTGCAGCTGCTTTAATGATTACACACTTTT
TAATGATTAGAAAACAGGGTATTTCTGGTCCTTTATAA
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