prot_H-paniculata_contig22362.5952.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig22362.5952.1
Unique Name	prot_H-paniculata_contig22362.5952.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	139

Homology

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BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: A0A1L2F1Q1_9PHAE (Cytochrome b6-f complex subunit 4 n=58 Tax=Stramenopiles TaxID=33634 RepID=A0A1L2F1Q1_9PHAE)

HSP 1 Score: 284 bits (726), Expect = 9.720e-97
Identity = 133/138 (96.38%), Postives = 137/138 (99.28%), Query Frame = 0

Query:    1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 138
            GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSA+GEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVP GLITVPFIENVNKFQNPFRRP+ASTVFLIGTF+AIWLGIGACLPINKA+TLGLF
Sbjct:   23 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSAIGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPAGLITVPFIENVNKFQNPFRRPVASTVFLIGTFIAIWLGIGACLPINKALTLGLF 160

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BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: B2XTC2_HETAK (Cytochrome b6-f complex subunit 4 n=4 Tax=Ochrophyta TaxID=2696291 RepID=B2XTC2_HETAK)

HSP 1 Score: 262 bits (669), Expect = 4.770e-88
Identity = 121/138 (87.68%), Postives = 131/138 (94.93%), Query Frame = 0

Query:    1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 138
            GHNYYGEPAWPND+ Y+FP+ ILGTF IV GLAV+EPSALGE ANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVL+MA+VP+GLITVPFIEN+NKFQNPFRRPIASTVFL GT VAIWLGIGACLPIN+A+TLGLF
Sbjct:   23 GHNYYGEPAWPNDLLYIFPVVILGTFSIVTGLAVLEPSALGEPANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLSMAAVPLGLITVPFIENINKFQNPFRRPIASTVFLFGTVVAIWLGIGACLPINQAVTLGLF 160

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BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: A0A7U0KT28_OLILU (Cytochrome b6-f complex subunit 4 n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=A0A7U0KT28_OLILU)

HSP 1 Score: 259 bits (661), Expect = 7.920e-87
Identity = 118/138 (85.51%), Postives = 132/138 (95.65%), Query Frame = 0

Query:    1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 138
            GHNYYGEPAWPND+ Y+FP+CILGTF I+IGLA++EPSALGEKA+PFATPLEILPEWYFFPTFN+LRVLPNKLLGVLAMA+VP GLITVPFIENVNKFQNPFRRPIAS VFL+GT +AIWLGIGA +PI+KA+TLGLF
Sbjct:   23 GHNYYGEPAWPNDLLYIFPVCILGTFSILIGLAILEPSALGEKADPFATPLEILPEWYFFPTFNILRVLPNKLLGVLAMAAVPAGLITVPFIENVNKFQNPFRRPIASIVFLLGTVIAIWLGIGATMPIDKALTLGLF 160

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BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: A0A0D3M5D2_9STRA (Cytochrome b6-f complex subunit 4 n=17 Tax=Eustigmatophyceae TaxID=5747 RepID=A0A0D3M5D2_9STRA)

HSP 1 Score: 252 bits (643), Expect = 4.390e-84
Identity = 113/138 (81.88%), Postives = 128/138 (92.75%), Query Frame = 0

Query:    1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 138
            GHNYYGEPAWPND+ Y+FP+ ILGTF +VIGL+ +EPSA+GEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGV+AMA+VP GL+TVPFIEN+N FQNPFRRPIAS +FLIGT  AIW GIGAC+PI+KA+TLGLF
Sbjct:   23 GHNYYGEPAWPNDLLYIFPVVILGTFALVIGLSTLEPSAIGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVIAMAAVPAGLLTVPFIENINTFQNPFRRPIASFMFLIGTVFAIWFGIGACMPISKAVTLGLF 160

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BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: A0A516ZA44_9STRA (Cytochrome b6-f complex subunit 4 n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZA44_9STRA)

HSP 1 Score: 252 bits (643), Expect = 4.390e-84
Identity = 116/138 (84.06%), Postives = 126/138 (91.30%), Query Frame = 0

Query:    1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 138
            GHNYYGEPAWPND+ Y+FP+ ILGTF I+IGLAV+EPSALGEKA+PFATPLEILPEWYFFPTFNLLRVLPNKLLGV+AMA+VP GLITVPFIENVNKFQNPFRRP+A  VFL GT  AIW GIGACLPI  A+TLGLF
Sbjct:   23 GHNYYGEPAWPNDLLYIFPVVILGTFAILIGLAVLEPSALGEKADPFATPLEILPEWYFFPTFNLLRVLPNKLLGVIAMAAVPAGLITVPFIENVNKFQNPFRRPLAMAVFLFGTAFAIWFGIGACLPIKDAVTLGLF 160

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BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: A0A1X9PVG8_9RHOD (Cytochrome b6-f complex subunit 4 n=1 Tax=Bulboplastis apyrenoidosa TaxID=1070855 RepID=A0A1X9PVG8_9RHOD)

HSP 1 Score: 249 bits (637), Expect = 3.610e-83
Identity = 113/138 (81.88%), Postives = 125/138 (90.58%), Query Frame = 0

Query:    1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 138
            GHNYYGEPAWPND+ YMFP+CILGT    +GLAVMEPSALGE +NPFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MA+VP GLITVPF+ENVNKFQNPFRRP+A  V+L GT  +IWLGIGA LPINKA+TLGLF
Sbjct:   23 GHNYYGEPAWPNDLLYMFPVCILGTIACCVGLAVMEPSALGEPSNPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPAGLITVPFLENVNKFQNPFRRPLAMAVYLTGTVTSIWLGIGATLPINKALTLGLF 160

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BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: M1K3S0_DIALT (Cytochrome b6-f complex subunit 4 n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1K3S0_DIALT)

HSP 1 Score: 248 bits (634), Expect = 1.030e-82
Identity = 110/138 (79.71%), Postives = 129/138 (93.48%), Query Frame = 0

Query:    1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 138
            GHNYYGEPAWPND+ Y+FP+ ILGT   ++GL+V+EPS+LGEKA+PFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MA+VP GLITVPF+ENVNKFQNPFRRPIAS  F++GTF+AIWLGIGA +PIN+A+TLGLF
Sbjct:   23 GHNYYGEPAWPNDLLYIFPVVILGTIACIVGLSVLEPSSLGEKADPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPAGLITVPFLENVNKFQNPFRRPIASLTFVLGTFIAIWLGIGATMPINQALTLGLF 160

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BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: A0A3G2QYE4_9STRA (Cytochrome b6-f complex subunit 4 n=6 Tax=Ochrophyta TaxID=2696291 RepID=A0A3G2QYE4_9STRA)

HSP 1 Score: 247 bits (630), Expect = 4.210e-82
Identity = 111/138 (80.43%), Postives = 125/138 (90.58%), Query Frame = 0

Query:    1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 138
            GHNYYGEPAWPND+ Y+FP+ I GTF  VIGL+V+EPS LGEKANPFATPLEILPEWY FPTFNLLRV+PNKLLG+ +MA+VP+GL+TVPF ENVNKFQNPFRRPIAS VFL+GTFVAIWLG GA +PI+KAITLG F
Sbjct:   23 GHNYYGEPAWPNDLLYIFPVVIFGTFACVIGLSVLEPSGLGEKANPFATPLEILPEWYLFPTFNLLRVIPNKLLGLASMAAVPLGLLTVPFFENVNKFQNPFRRPIASVVFLVGTFVAIWLGFGATMPIDKAITLGFF 160

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BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: PETD_EMIHU (Cytochrome b6-f complex subunit 4 n=13 Tax=cellular organisms TaxID=131567 RepID=PETD_EMIHU)

HSP 1 Score: 246 bits (629), Expect = 5.970e-82
Identity = 111/138 (80.43%), Postives = 124/138 (89.86%), Query Frame = 0

Query:    1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 138
            GHNYYGEPAWPND+ Y+FP+CILGT    IGL V+EP+ LGEKA+PFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MA+VPIGLITVPFIENVNKFQNPFRRP+AS VFL GTF A WLGIGA +PI +A+TLG F
Sbjct:   23 GHNYYGEPAWPNDLLYIFPVCILGTIACCIGLGVLEPTPLGEKADPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPIGLITVPFIENVNKFQNPFRRPVASLVFLFGTFTAFWLGIGATMPITQALTLGFF 160

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BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Match: PETD_PORPU (Cytochrome b6-f complex subunit 4 n=14 Tax=Bangiaceae TaxID=31345 RepID=PETD_PORPU)

HSP 1 Score: 246 bits (629), Expect = 5.970e-82
Identity = 111/138 (80.43%), Postives = 126/138 (91.30%), Query Frame = 0

Query:    1 GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATPLEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQNPFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF 138
            GHNYYGEPAWPND+ Y+FP+ ILGT    IGLA++EPS+LGEK+NPFATPLEILPEWYFFPTFNLLRV+PNKLLGVL+MA+VP GL+TVPFIENVNKFQNPFRRPIA+T+FLI T + IWLGIGA +PIN AITLGLF
Sbjct:   23 GHNYYGEPAWPNDLLYVFPVVILGTIACSIGLAILEPSSLGEKSNPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPAGLLTVPFIENVNKFQNPFRRPIATTIFLISTVITIWLGIGATMPINNAITLGLF 160

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig22362.5952.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A1L2F1Q1_9PHAE	9.720e-97	96.38	Cytochrome b6-f complex subunit 4 n=58 Tax=Stramen...	[more]
B2XTC2_HETAK	4.770e-88	87.68	Cytochrome b6-f complex subunit 4 n=4 Tax=Ochrophy...	[more]
A0A7U0KT28_OLILU	7.920e-87	85.51	Cytochrome b6-f complex subunit 4 n=1 Tax=Olisthod...	[more]
A0A0D3M5D2_9STRA	4.390e-84	81.88	Cytochrome b6-f complex subunit 4 n=17 Tax=Eustigm...	[more]
A0A516ZA44_9STRA	4.390e-84	84.06	Cytochrome b6-f complex subunit 4 n=2 Tax=Dictyoch...	[more]
A0A1X9PVG8_9RHOD	3.610e-83	81.88	Cytochrome b6-f complex subunit 4 n=1 Tax=Bulbopla...	[more]
M1K3S0_DIALT	1.030e-82	79.71	Cytochrome b6-f complex subunit 4 n=2 Tax=Pavlovac...	[more]
A0A3G2QYE4_9STRA	4.210e-82	80.43	Cytochrome b6-f complex subunit 4 n=6 Tax=Ochrophy...	[more]
PETD_EMIHU	5.970e-82	80.43	Cytochrome b6-f complex subunit 4 n=13 Tax=cellula...	[more]
PETD_PORPU	5.970e-82	80.43	Cytochrome b6-f complex subunit 4 n=14 Tax=Bangiac...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005870	Cytochrome b6/f complex, subunit IV	PIRSF	PIRSF000033	Cytochrome_b6f_IV	coord: 1..138 e-value: 1.2E-80 score: 266.8
IPR005870	Cytochrome b6/f complex, subunit IV	TIGRFAM	TIGR01156	TIGR01156	coord: 1..138 e-value: 2.2E-77 score: 256.4
None	No IPR available	GENE3D	1.20.5.510		coord: 1..44 e-value: 1.8E-24 score: 87.3
None	No IPR available	GENE3D	1.10.287.980		coord: 45..138 e-value: 4.5E-36 score: 125.0
None	No IPR available	PANTHER	PTHR19271	CYTOCHROME B	coord: 23..138
None	No IPR available	PANTHER	PTHR19271:SF16		coord: 23..138
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 73..92
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 36..72
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 14..35
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 104..129
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 93..103
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 130..138
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..13
None	No IPR available	TMHMM	TMhelix		coord: 73..92
None	No IPR available	TMHMM	TMhelix		coord: 107..129
None	No IPR available	TMHMM	TMhelix		coord: 15..34
IPR005798	Cytochrome b/b6, C-terminal	PFAM	PF00032	Cytochrom_B_C	coord: 43..132 e-value: 2.4E-18 score: 66.3
IPR005798	Cytochrome b/b6, C-terminal	PROSITE	PS51003	CYTB_CTER	coord: 1..138 score: 15.66
IPR036150	Cytochrome b/b6, C-terminal domain superfamily	SUPERFAMILY	81648	a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)	coord: 2..133

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig22362	contig	H-paniculata_contig22362:1737..2153 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig22362.5952.1	mRNA_H-paniculata_contig22362.5952.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig22362 1737..2153 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig22362.5952.1 ID=prot_H-paniculata_contig22362.5952.1|Name=mRNA_H-paniculata_contig22362.5952.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
GHNYYGEPAWPNDIFYMFPICILGTFVIVIGLAVMEPSALGEKANPFATP
LEILPEWYFFPTFNLLRVLPNKLLGVLAMASVPIGLITVPFIENVNKFQN
PFRRPIASTVFLIGTFVAIWLGIGACLPINKAITLGLF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005870	Cyt_b6/f_cplx_suIV
IPR005798	Cyt_b/b6_C
IPR036150	Cyt_b/b6_C_sf