mRNA_H-paniculata_contig2235.5949.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2235.5949.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE) HSP 1 Score: 2238 bits (5799), Expect = 0.000e+0 Identity = 1625/3925 (41.40%), Postives = 2116/3925 (53.91%), Query Frame = 1
Query: 13 FAVVSASVDSLSLSLLKHQRQPE-----ERGEAEQEGETMVEEPESISVPVHGLGTVSVRSIPVAQR-PSLRPPIAFIVAKVTGVALDVHVLPDGKEVAADVKFQISSVIVRHVRLGDLDVTSPNNSPRCDIERKAHKLKGVVNSPDLVLFWGTSAGDPLAAASPEHDEEKGSNEGADVAGSDVLADPRSAAYVRRCILERLRDLPSVSVDEASELGSGLGPPVSTTSNRSLEQSPQAQLQGIAGTASPPPSPPQWVPAPYPRVRAAESTFAVQYRLLKVKD--VANEGPRDEGILPVV-VEATSACHDLRLGPLRAHLTEALLEQLVIFTGGMGDEA-----------------TTALGKGSFDLSS----SPPRAQGKSQRARRGSWSPLRRTGTHSAKASMGATKVLPP-PI-ATSETSVHLALRSVEVALNVAAPGEDYQQEATSVAITTACHHPTFEDKMMFVIFSVDEVGMSGSESMSRFAQPSDRQREWHASAATRSTLENSDTRVCSLSLEALSMVFLDGRSIGEAAKPCVPRG--GVPTSQSWSLVENVFAMASGIELPATQQLVRMGRCRMTAEVASKVLPANHSGGESRTSASHKGAARLPSYEIVFNASCESLCACACSGIALLVLEACALSRKIKSFGCVRDVKGNSFSREAVSHSSHSRWSSAWARGVNSSFEGISIGGVFKTGGHQFTGNVRRLCVGQV-SGRAQRGQSSDVSSDAAVFEATDGS---EALSFSVETFND-QGVTGISARSDFKSAVLDYAKIEVALRQVNLVLGEWKAGAATRFLGAGQVVAGTSTAYASPSAKVG---RSGALHFDFRGTAVSVQLPFELLLQVDGVSVSLRRVSQFSRGRAAEHQRSHNRDMTIDLLAADVRVLHAAHGARS-SPQDAQPPAIHCAARGIVNLKPSMNATSVSLDSEHVKVRLTPAFCASFGSFIRFMIGPPAARSSALGNXXXXXXXXXXXXXXPPVSFSFELR-----------------------------KVIAAAPGSPAVGSTASFEIAFDKLEGTQRREPGRNAPFLPQETVTLIGKFLKRGPGKELFKAWLAARKN---SRRSDAVIVQPLVIALGSVGSGAATDSQALSVISTTTGSRERLMNSLTLRLAPTLLAFYPPVVRLLVGHYNRFGGQAFRTFRSRSDLPQKKVGVMRYDVDIRGSGAVLLASLAVGARGVHISAGQVTVKENMSGVTT-------GPAATQTSSWRTDGPIDAREQAVSMSGFVGPVVMAFVQDWRCLLPSYLRAASSSSGAIGEGESGGGQVHLCVPIDLRWTMCYDHVDRFRQDISLSSVQLYLEQSHFDLCARLRQIFMAADFPGALAPKSRPSSGTVTTTASSVRNLTTSSATNTGEYGGMNSFLDLSLRLPLLQVVLAMGKRDGPSPPVLEIDIASIRLAQGGVFTVRHVSVNSWPQQLGSGGXXXXXXXXXXXXXGHSD---RVFERSGQSEESGKDFARMEVQVPT--ADRAASQQAKFDIVLQVEPFNVHVNPTILHALTVYATPIPFEAGSTEALEALFPNSVRAAAXXXXXXXTSWHSIDRAAPPSSLNTAEDSAGPKVFCSTPFSGMKKPSEFDQLAQPAATSMKFIAPQVSIVLSSFSGGPAIIATTSHVFLRAIMRPSGSNGGSRSWSSQE--CEGGDEMFARLSRVSCRVDCGYGGPSSSSHNKNTAWGGGPRRPDLQGGDAVLKPFDVDIYLTRPQASMTSGCGGDCSVRGDGIGEPPSLAPGWHAAIYIDELYLRLGATHTRSLERLAGLFIPAVAAAESTAAKLARGPGSTRIVSGSRG-GGPTHADDLITLERVESLEYAERGANVRPRPGQAVFYGISAFQPDVQEENIDGSAADGDGSS---------------EEDD---WVICCEWQYWSLRRVAQVGLPCAPVVGSIPLVDGLVIDSLEVELRFVDPLTGSFKAATRFIVPCQTSNARPSGFY-THRRRPTMEPSQPFHARTWRLAWRIPTWIQLPGGAVRPPPSPLAVSVWTLAVLRSISVWSIPGGPVVGPSYASVTLGVQRVTLALLTDGSPAMSSST---------------GSGGSLQAEEIVRLIVDELNTFAEVGRSGDNDTLVPASAPAASVRGNAAVAVEVQDFSNFLRLPLLSHALVTWTVAT----GGGGDDGGVNAMLLSPFRPVASAAVGVQDAVISVSATAMQCIDRCLDELSLKASVGDESLPMSVDASASRDSKHNVPHTSAVSPPHPAQLPPQPLLPQQRKGYVVTNRTDRYLWFGQVSTTETVILSPGISTAYRWRTIPAPPAT-ATGGKGGAPFGLELMLRLALHCDNGSSGG-------GGSSFGAWTEPFLADHVGTYMRMLRSAGAEGQHAAGSGDDAMVFPLWIVVSKEGLQTRIELCGEWIFTNHLPQEVQVTWATAAGARNSNRTLVEPPGTRGDLNLAGCGPDQAAIGVDFGREARISHPESLSALTICAPVAIPGVAEEWRGRLSELMLEFRLAGPDATAVVGSVGPPPITTMN-AAHPSIA--ASG---GGRDPYRGXXXXXXXXXXXXXXXXDGTDEGGDEGDGASWAATRQSDWVEARPGVHLSLISCASPDLASSSIWFWCVASRQATPLNDCAACGSGAPGHRCHLGQMLIDLRPITIVWNRCSLPLRVMLEGAGRGRGGAGAAIASLQRDYKNNQGQIDHPAGEITSRCGVNNEVAMHTSDSSYAFSLEGSGLNLQPGMRTAFCQQPFVDYRLTIAAAGIQAGGTTPSTMEDTASRPFLVSVPSELLYRSCEARWLPLHERALTENVLSPLVVVASRPLDVHWPSLALRVYPGLSVQNNLPLPLSVFSVFSCPVDTKTTGATSEGEDHNLRHKQPASVKMTT------TSTADEEDMHPNIPLLRHGGAAGPEGSLSADGVGGSRGGDSSVSGHSSVGSFSRIFRTSAESLHSAWNI-RDSKGDPVPCVLPTVCFEFSLCSEDEDTPTTLAASS----APEVAPSGSGWKISADNTGER--SRRSPRLTLNLDNDLGSLSELVFIPCGPARAAESGDGSQQQSVNQQNSVMLPVIVKLEKETVAGGVALLRLEIHPRVVMHNATNLPMSLSLLGAHHA------------DSSPLWCAHLAPEGSGSSMAVPALPGRRVYYSSQPDVIDRPGAWSEGDPMEAHVARGDLSTGDDGGRIAVKSGGGLRYGLSWLMKS-AYKAVPTKPTGFWTDLKVAFAYDESEREI--------------PKDVAHGEVVADSG------------EKSIISLLEPSAGAPLHLEPASIIVPADGGRRAARVCLAMETDPQENEASTLSSLTPTRHLLLYQDPQPILTVCNRAAGPVTVMFDCGATLEVGPGETAEHSWPEPRSGDRSNSGG------------------------AVVAG--------DISELSLLASPASSTPGSPVPAR-------------------NSRRLSGNRFGG--------------GDPATLQHWFRCKGGNQSDDSVSWSNPLWVARGVQVIRFDKRVHSGDGNLRNRGVGGXXXXXXXXXXSGREFIAWNDGTVGDGDVG------GFGVGPEAREVQVHVMERAGGFVMSFAEGGFEGVSCATDGNEGAIVDTG-RYGNRISSR-VLRRWAETQEQHLVLSISGTTIQLLDDSALQAVAAAATPARREFPTTSASAATDASVARTKVPEGAPGEMDGWIGGNWVRPGGLFSDATSAALPAAAIPAIVSVFVGGSSIRLWRAAPTVRQDMSTLDLERYWHLKDRVGLDVSLEMLQVDNHVAGHRLPVMFCFRRDGAPVYANEAAGGSRNSTSSTSSKIGSECRFTLSLVLAECWKDSGVQSYLEKVYLRSSPIDVCFEDSVLPPLAKFLERV 10986
F V SASV S+SL L +HQ QP ERGE E+ EEP SISVPVHGLGTVSV S PV+ R R +A E++ DVK +SS++VRH RL + T + P ++ L+ VV+ WG + S E D G +G LAD R+AA V+RC++E + P ELG+ G + SN S QS +A P + Q P+ PR +S+ A+QYRLLK K + +G D G + + +T ACHDL +G LR L E LLE+L+ F G +G EA L+S PPRA S RA G+ SA + + + LPP P+ ++SETS+H ALRSVEVAL +A + + + D+ F + S+ ++ +SGSES ++ + A+A R E S R+CSL L LS+V +DG +AA P G G P S SL + VF +G ++LVR+G R+TAE+ SK++ G++ +A G P + +FNAS ES C G ALLVLEA L+RK+ G D S +R W+RGV ++ EG+S+GGV K+GG Q TGN+RRL VG++ +G +G+SS + SD V EA G E LS+++E D +GV G+ + FKSA L + + + + L EW A AA R L PSA RS FD RG+ V++ LPFEL L+V+ V + F++ E +R+ N D+ +D++A DVR+ H HG+ S +D PPAI CAARG+V ++P+ NAT+VSL+SEHV+VRLTPAFC+SFG F+R M+GPP +A PP SF+FEL+ K A A G+P GS ASF+++F+ +E TQRR P RNAP LP E LIG F+ G +F AWL+ARK S ++ VQP ++ALGS + A QA SV+ST++G R RL+NSL+LRLAP +LA+YPP R+L+GHYNRF AFR+FRSR+D+P++++ V+ YD+DI+G AVLLASLA GARGVH+SAG+VT KE+ + G + +S+ D I A + ++MSGFVGPV MAF+QDWR +LP+ + + S+G +G++ V LC PIDLRW M YD DR RQD+SLSSVQ YLEQ HFDLC R+ QIF+AAD+PGAL P + + V ATN + ++SFL SLRLPLLQ VLA GKR G PPVLEID+AS+RLA+GGV TVRH+SVNSW Q S S RV RSGQSEESGKDF RMEV+VP + + +QA+ D+VLQV+PF++HVNP+IL + T Y P+PF G E E LFP + H+ +A A+D A V C++ SG + + F++ A A+ S++ +A QV++ LSS+ GGPA +A+TSHVFLRAI PS + + SS E + G E+FARLSRV CRV CG S++ +N A G +PD Q GD VLKPFDVD++LTRP AS G + E P + GWHA +Y+DELYLR H RSLE L+ LF+PAV AAE TA +L RG S SG +G G DDL L+RVE E A V+P PGQAVFYG+ + + G+++DG G+S EE+ WV CCEW+YW LRRVAQV P P+ GS+PL++GL + SLEVEL FVDPLT + KA N F R T+EPSQP ARTWRL+WR+P+W++ P P A+S W+ A+LR++S+ S P GPVVGPSY S TL QR+TLALLT+G SS+ G G +Q EEIVR+++ ++N FAE + A + + RG+A VA +VQDFSNFLRLPLLSHA V V+T GG G LLSPFRP+AS AV V AV+S+S TAMQCID+C+ EL+ K S DE P + ++ + ++K +V AV P +PP Q+ K Y++TN TDR LWFGQVSTTET+ L G T YRWRTIP A A G KG L LMLRLALH +GS GG G +GAWTEPF DHVGT+ D + PLW+ V K GL+TRI GEW+FTNHLPQE+QV W T+AG N+ R LVEP GTRG L+L C GR HP S SALT A + G + GRLSELMLEFRL+ PDA A VGSVGPPP+ T + HP+ A A G GG RG G +E + G+ W TRQS+WV+ARP V L+LISCAS D S FWCVASRQA+ A GHR +LGQM IDL P+ +VWN S+P+R +L+ G G A+L +D G T N+ D +SL + ++PG RTA CQ+PFVDY L +A+ G A + PFLVSVP+ELL R CE+ WLPLH RAL++N+LSPLVVVASR LD +WPSL+LRVY GLSV+N+ +PLS+ + F P+ G D +QPA +T T LLR G+ S+S DG GG G SG +V SR+FR AES HSAW++ S+G +P +LP V + L S +E +P+ AS + V P S ++ T RRS +L ++L + L+ELV +P A SG V+LPV+ LE+E V GGV L+RL ++PRVV+HNAT +P+SLSLLG H ++ P+ L PEGSGS M + A+PG R +D A G P A G+ + G + GL LS ++ S +YKA P GF DL++AF +D+ + P G A +G E + SL EPSAG+ L P+S+ VP GG+RA RV +A+E P E ++ + L RH+L+Y+DPQP LT+CNR+ VT++ DCGA +EV PG T EHSW + + D + S G A + G D + +P SS P SPV AR ++RR + GG G ATLQHWF+CKGG + D +SWS+PLWVARGVQV+RFD + S + + +RG+ +G G+G G GFG G AREVQVHV+ERAGGFVMSFAEGGFEG + G +V++G R + + SR VL RWA T QH+V+++SG ++QLLDDS LQA AA +++ A + G MDGW+GG W PGGL SD SA LPAAAIPAIVSVFV SS+RLWRAAP VR MS+LDLER WHLKDRVG+DV L LQ+D+HVAGHRLPV+FCFR G V +E G ++ CR +SLVLAE W+DS V SYLEKV + S+PIDVCFEDS+LPPL LER+
Sbjct: 673 FVVASASVGSVSLRLFEHQEQPAHAEPTERGEEEECNSPEDEEPLSISVPVHGLGTVSVFSTPVSARWEDWRVVVA-----------------SDNELSTDVKVDVSSIVVRHARLFEDAATPAADKPPDQADKGLDYLEPVVS-------WGAAVMPDAPPTSQEGDLGSGRTDG--------LADLRTAAIVQRCLIELAQGSP--------ELGAADGESIDGESNSS-RQSARAPXXXXXXXXXXPWA--QVFPSAAPRPVPKDSS-ALQYRLLKRKGGGTSTDGSPDSGGVAITGTVSTLACHDLAVGALRVQLAELLLEKLLKFFGVVGGEAGGTEPXXXXXXXXXXXXXXXXXXXXVALASVQGRPPPRASRLSPRASD--------AGSGSA---LSSPRTLPPRPVNSSSETSLHFALRSVEVALGLAGGAHEAGENVGDRS----------RDQPAFCVLSLSQLELSGSESALYGCGGGEQ--HFVATAPQRQRDEESQ-RLCSLVLGNLSIVLIDGSV--QAADESAPLGRQGSPPLMSRSLAQEVFL--AGGNTAGIRRLVRLGGARVTAEILSKLV------GDTEPTA--VGTYSAPDF--LFNASLESGEVCVSVGAALLVLEAYVLARKMG--GVYPDALAISVGEICAPRVHRNR---GWSRGVGAALEGVSVGGVVKSGGCQLTGNMRRLSVGRMGAGVPLQGESSVMPSDVVVLEALRGEGSDEGLSWTLEVSGDSEGVGGVKLATVFKSARLHHMNAKKVVEDIMLASKEWTARAA-RCL---------------PSATAAARRRSQPFEFDIRGSTVTLHLPFELELEVEDVHLG---TPGFNQAVEPEGERA-NGDLDLDIVAGDVRMFHKPHGSSFYSSEDVVPPAIRCAARGVVAVRPTANATAVSLESEHVRVRLTPAFCSSFGLFVRLMVGPPPRPLAA-----DAAAAALMREGRPPNSFTFELKVRTVDVGFFTGPCCPSAVSAAFLVGGVSMKQHATAAGAPGAGSRASFQMSFEAVEATQRRNPSRNAPALPYEAAQLIGAFVGHGGAPGVFSAWLSARKRPVGSSQAGPTYVQPFLVALGSSSATA----QAFSVVSTSSGPRHRLVNSLSLRLAPMMLAWYPPTFRILMGHYNRFAANAFRSFRSRADMPRRRIAVLSYDIDIQGCSAVLLASLADGARGVHLSAGKVTFKEDTAAAAAAASPAGMGGSHASSSALALDASI-APDTTLAMSGFVGPVGMAFLQDWRSVLPT---SVAPSAGGRLDGDAAAAPVQLCAPIDLRWAMFYDEFDRCRQDVSLSSVQFYLEQPHFDLCVRVAQIFVAADYPGALPP-AVVAPQIAGHPQDPVHGAPVGGATNNAQ---VDSFLATSLRLPLLQFVLANGKRSGSFPPVLEIDVASVRLARGGVLTVRHLSVNSWSQDADSPARSEAAAGEIGNENDGSGCGYRVLGRSGQSEESGKDFLRMEVRVPEIRSGKLGPRQAQLDVVLQVQPFDIHVNPSILRSFTAYIAPVPFVEGFPEEEEVLFPQRQPPLTTPCHSSSSKPHN---SATRHGDGAADDGAAGGVECAS-SSGQRLSTNFEKSALTASGSVRVLASQVTLELSSYPGGPAFMASTSHVFLRAITWPSDAMRAAARGSSGEGGVQAGPEVFARLSRVECRVKCGQESGGSAATVQNRARVGPSSQPDDQLGDTVLKPFDVDVHLTRPGASSARGVAALAAGVNTTASEYP-VTQGWHAGVYVDELYLRCAPLHVRSLELLSDLFLPAVTAAELTAVELGRGGRSRGTASGLQGLAGGGRIDDLAALDRVECREPAGHADAVKPGPGQAVFYGVGTTPQGGRPRRV-GASSDGAGASGVAEEEKEAGGRKEGEEEGRGGWVHCCEWRYWGLRRVAQVAFPRLPLCGSVPLLEGLAVTSLEVELSFVDPLTETVKAP----------NGSSDDFVLAGGSRVTIEPSQPILARTWRLSWRVPSWLRFKAAGAGGAPKPPAISAWSSALLRTLSIRSSPSGPVVGPSYVSATLVAQRLTLALLTEGGAISRSSSXXXXXAPVSPSRRREGLGVFVQPEEIVRVVIADVNFFAEAS--------LAARWLSVAARGSAVVAADVQDFSNFLRLPLLSHAAVKLDVSTSSVRGGTGRMAAEGESLLSPFRPIASGAVDVNGAVVSMSVTAMQCIDQCIAELTRKPS--DE--PATRRSTTAAEAKPSV---VAV----PTPVPPSRRPRQRSKRYIITNHTDRNLWFGQVSTTETLFLRAGEETLYRWRTIPRTLAAGAAGRKGDDASRLVLMLRLALHRVSGSGGGYAGAGSERGGWYGAWTEPFPVDHVGTFKEE---------------SDLVTLPLWVEVDKNGLETRIAFHGEWVFTNHLPQEIQVAWVTSAGVGNAGRCLVEPTGTRGGLSLEACSTS--------GRADGSLHPVSCSALT--ASSSSLGTGQAQGGRLSELMLEFRLSTPDAAAFVGSVGPPPVATEDLGGHPAAARDADGLGDGGSYDRRGLDDELLQ----------GREEIEVDSSGSPWEVTRQSEWVQARPFVFLALISCASTDPGISGFAFWCVASRQAS---------RAANGHRGNLGQMRIDLHPMALVWNGSSIPMRAVLKHRSGGGGWPEQPPATLAE-------AVDEQGGAGTGHTADRND------DPRANYSLSRTTSAIRPGGRTAVCQRPFVDYDLAVASTGTAA----------CQAAPFLVSVPAELLSRRCESTWLPLHSRALSDNILSPLVVVASRLLDANWPSLSLRVYSGLSVENHTSVPLSLRADFIRPL---------LGSDGEPSAQQPAEAPVTERGEPERAQTEXXXXXXXXXXLLRRRGSE----SVSVDGGGGDAG-----SGRRAVARVSRMFRAGAESCHSAWDMFHGSEGFSIPFLLPHVSLDIGLDSREEASPSPATASVRAGWSSLVPPGRSADEVPGGPTPPTPAERRSRKLKVSLAEE---LNELVLVPW----EASSG-------------VVLPVLATLEREVVLGGVELIRLALYPRVVVHNATGVPVSLSLLGGAHVAAEDKSGGGARNEALPMCRVRLTPEGSGSRMNLLAIPGERALPG-----LD---ASHHGFPQSAAGREGERAGEGRGFPLENVPRPGLLGRLSRILSSGSYKASSAHPAGFSADLEMAFGWDDRADQASAADSGAVDGRGAPPTARPAGNEAASTGATKWSQDGCGANELPVFSLCEPSAGSSLASHPSSLTVPG-GGQRAVRVYIAVE--PPGAEPTSAAPLA--RHVLIYRDPQPDLTICNRSTDTVTLLLDCGALVEVAPGGTVEHSWRKEPTRDANGSNGXXXXXXXXXXXXXXXXXXXXXXXXASMTGRHSRRWSEDSRGVVDTPTPMSSAPSSPVQARPGTAAXXXXXXXXXTGAALDARRSCVSGPGGSPALRKAARAPGKLGGDATLQHWFQCKGGAKGDVFLSWSDPLWVARGVQVLRFDGQNGSNEESWGHRGIA--------------------EGGSGEGGGGRDDGRKGFGTG-SAREVQVHVVERAGGFVMSFAEGGFEGAAADCVG----VVESGARDNHHLESRGVLGRWASTLGQHVVVTVSGVSLQLLDDSNLQAFAANGQGG-------------NSTAAAARAASDRLGGMDGWVGGTWAEPGGLPSDGASAHLPAAAIPAIVSVFVDASSVRLWRAAPAVRPGMSSLDLERSWHLKDRVGIDVCLGTLQIDSHVAGHRLPVIFCFREGGPLVEVSEIGMGMPGDD-----QVKGGCRLAMSLVLAESWEDSRVPSYLEKVSIHSAPIDVCFEDSLLPPLLLLLERL 4277 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2235.5949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2235.5949.1 >prot_H-paniculata_contig2235.5949.1 ID=prot_H-paniculata_contig2235.5949.1|Name=mRNA_H-paniculata_contig2235.5949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=3664bp DSIVFAVVSASVDSLSLSLLKHQRQPEERGEAEQEGETMVEEPESISVPVback to top mRNA from alignment at H-paniculata_contig2235:184..20620+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2235.5949.1 ID=mRNA_H-paniculata_contig2235.5949.1|Name=mRNA_H-paniculata_contig2235.5949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=20437bp|location=Sequence derived from alignment at H-paniculata_contig2235:184..20620+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2235:184..20620+ >mRNA_H-paniculata_contig2235.5949.1 ID=mRNA_H-paniculata_contig2235.5949.1|Name=mRNA_H-paniculata_contig2235.5949.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=21984bp|location=Sequence derived from alignment at H-paniculata_contig2235:184..20620+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |