mRNA_H-paniculata_contig22345.5947.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22345.5947.1
Unique NamemRNA_H-paniculata_contig22345.5947.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: D7G6L3_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L3_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.530e-39
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 1
Query:    1 GGRAMPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEANVRTAAAYVLFYRRRPL 219
            GGR M ALYDLFAVSNHMGGMGHGHYTAFVRDW+ SGMS+ W VCDD DCRPV EA VRTA AYVLFYRRRPL
Sbjct:  102 GGRPMSALYDLFAVSNHMGGMGHGHYTAFVRDWEGSGMSQDWHVCDDHDCRPVPEARVRTAHAYVLFYRRRPL 174          
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A6H5L229_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L229_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 7.150e-36
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 1
Query:    1 GGRAMPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEANVRTAAAYVLFYRRRPL 219
            GGR M ALYDLFAVSNHMGGMGHGHYTAFVRDW+ SGMS+ W VCDD DCRPV EA VRTA AYVLFYRRRPL
Sbjct: 1620 GGRPMSALYDLFAVSNHMGGMGHGHYTAFVRDWEGSGMSQDWHVCDDHDCRPVPEARVRTAHAYVLFYRRRPL 1692          
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A7S2P145_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P145_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 9.260e-21
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   13 MPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEANVRTAAAYVLFYRRR 213
            +PA+YDLF V+NH G MG GHYTA  R WDDSGM   W + DD +   +DE NV T AAYVLFYRRR
Sbjct:  524 IPAVYDLFGVTNHYGRMGFGHYTACCRQWDDSGMGEDWSLFDDSNVTEMDETNVITPAAYVLFYRRR 590          
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A2D4CH16_PYTIN (Ubiquitin-specific protease, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CH16_PYTIN)

HSP 1 Score: 84.3 bits (207), Expect = 9.070e-20
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    1 GGRAMPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQ-WFVCDDQDCRPVDEANVRTAAAYVLFYRRRPL 219
            GG +    YDLFAVSNH GGMG GHYTAF R+W+D+G     W+  DD    PV    V+++AAY+LFY+RR L
Sbjct:   12 GGPSERQQYDLFAVSNHYGGMGFGHYTAFARNWNDAGEKYPGWYSFDDSQVSPVMPGQVKSSAAYILFYKRRCL 85          
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A448ZDP4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDP4_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.030e-18
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1
Query:   13 MPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEANVRTAAAYVLFYRRR 213
            +PA YDLFAV NH G +G GHYT+F   WD++G+S++W   DD    PV+ + V+++AAY+LFYRRR
Sbjct: 1160 VPADYDLFAVVNHYGRLGFGHYTSFAMQWDETGISKEWNAFDDSSVHPVEPSEVQSSAAYILFYRRR 1226          
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A7S2A1U5_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2A1U5_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.900e-18
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 1
Query:   13 MPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEANVRTAAAYVLFYRRR 213
            +PA+YDLFAV+NH G MG GHYTA+ R W++ GMS QW   DD +   +  + V T AAYVLFYRRR
Sbjct:  814 VPAIYDLFAVTNHYGRMGFGHYTAYARKWNEDGMSDQWAAFDDSNVGGIKPSMVVTPAAYVLFYRRR 880          
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A1Z5JW65_FISSO (Ubiquitin carboxyl-terminal hydrolase 4/11 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JW65_FISSO)

HSP 1 Score: 85.9 bits (211), Expect = 6.660e-18
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   13 MPALYDLFAVSNHMGGMGHGHYTAFVRDWDD-SGMSRQWFVCDDQDCRPVDEAN--VRTAAAYVLFYRRR 213
            +PA+YDLFAV+NH G +G GHYTAF R W++ +G+S  W + DD   RPV  AN  + T AAYVLFYRRR
Sbjct: 1121 VPAIYDLFAVTNHYGRLGAGHYTAFARSWNERTGISDDWCLFDDSSVRPVSNANDAIVTPAAYVLFYRRR 1190          
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A1Z5KR46_FISSO (Ubiquitin carboxyl-terminal hydrolase 4/11 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR46_FISSO)

HSP 1 Score: 85.5 bits (210), Expect = 9.090e-18
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   13 MPALYDLFAVSNHMGGMGHGHYTAFVRDWDD-SGMSRQWFVCDDQDCRPVDEAN--VRTAAAYVLFYRRR 213
            +PA+YDLFAV+NH G +G GHYTAF R W++ +G+S  W + DD   RPV  AN  + T AAYVLFYRRR
Sbjct: 1127 VPAIYDLFAVTNHYGRLGAGHYTAFARSWNERTGISDDWCLFDDSSVRPVPNANDAIVTPAAYVLFYRRR 1196          
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A7S2S141_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S141_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.070e-17
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 1
Query:   13 MPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEAN-------VRTAAAYVLFYRRR 213
            +P++YDLFAV+NH G MG GHYTAF R W+++GM   W   DD + + V + +       + T+AAYVLFYRRR
Sbjct:  143 VPSIYDLFAVTNHYGRMGFGHYTAFARRWNENGMESDWANFDDSNVQSVGDGHGHVNGVKMATSAAYVLFYRRR 216          
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Match: A0A6S8PAR9_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8PAR9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.500e-16
Identity = 38/68 (55.88%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   16 PALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVDEANVRTAAAYVLFYRRRPL 219
            PA+YDLF V NH G MG GHYTAF R+W++ G    W + DD     V   NV + AAYVLFYRRRP+
Sbjct: 1072 PAIYDLFGVVNHYGRMGFGHYTAFCREWNELGEMSSWSLFDDSAVSSVVGNNVVSPAAYVLFYRRRPV 1139          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22345.5947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6L3_ECTSI1.530e-3984.93USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L229_9PHAE7.150e-3684.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2P145_9STRA9.260e-2162.69Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A2D4CH16_PYTIN9.070e-2054.05Ubiquitin-specific protease, putative n=1 Tax=Pyth... [more]
A0A448ZDP4_9STRA1.030e-1853.73Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2A1U5_9STRA1.900e-1858.21Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dity... [more]
A0A1Z5JW65_FISSO6.660e-1858.57Ubiquitin carboxyl-terminal hydrolase 4/11 n=1 Tax... [more]
A0A1Z5KR46_FISSO9.090e-1858.57Ubiquitin carboxyl-terminal hydrolase 4/11 n=1 Tax... [more]
A0A7S2S141_9STRA6.070e-1750.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A6S8PAR9_9STRA1.500e-1655.88Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22345contigH-paniculata_contig22345:2752..2970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue1.7e-28
Seed eggNOG ortholog2880.D7G6L3
KEGG koko:K11835,ko:K11839
KEGG Pathwayko04137,ko04144,ko04934,map04137,map04144,map04934
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04121,ko04131
Exons1
Model size219
Cds size207
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.0332475-UTR-H-paniculata_contig22345:2751..27631622929620.0332475-UTR-H-paniculata_contig22345:2751..2763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22345 2752..2763 +
1691480938.2497628-UTR-H-paniculata_contig22345:2751..27631691480938.2497628-UTR-H-paniculata_contig22345:2751..2763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22345 2752..2763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929620.0565197-CDS-H-paniculata_contig22345:2763..29701622929620.0565197-CDS-H-paniculata_contig22345:2763..2970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22345 2764..2970 +
1691480938.2657707-CDS-H-paniculata_contig22345:2763..29701691480938.2657707-CDS-H-paniculata_contig22345:2763..2970Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22345 2764..2970 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22345.5947.1prot_H-paniculata_contig22345.5947.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22345 2764..2970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22345.5947.1

>prot_H-paniculata_contig22345.5947.1 ID=prot_H-paniculata_contig22345.5947.1|Name=mRNA_H-paniculata_contig22345.5947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
MPALYDLFAVSNHMGGMGHGHYTAFVRDWDDSGMSRQWFVCDDQDCRPVD
EANVRTAAAYVLFYRRRPL
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mRNA from alignment at H-paniculata_contig22345:2752..2970+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22345.5947.1 ID=mRNA_H-paniculata_contig22345.5947.1|Name=mRNA_H-paniculata_contig22345.5947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=219bp|location=Sequence derived from alignment at H-paniculata_contig22345:2752..2970+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGCCGCGCGATGCCGGCCCTGTACGACCTGTTCGCGGTGTCCAACCA CATGGGAGGTATGGGACATGGACACTACACGGCGTTCGTGCGGGATTGGG ATGACAGCGGCATGTCTCGGCAGTGGTTCGTGTGCGACGACCAGGATTGT CGGCCAGTGGATGAAGCCAACGTGCGTACCGCGGCGGCGTACGTGTTATT TTACCGTCGTCGGCCGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig22345:2752..2970+

>mRNA_H-paniculata_contig22345.5947.1 ID=mRNA_H-paniculata_contig22345.5947.1|Name=mRNA_H-paniculata_contig22345.5947.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig22345:2752..2970+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGGCCCTGTACGACCTGTTCGCGGTGTCCAACCACATGGGAGGTAT
GGGACATGGACACTACACGGCGTTCGTGCGGGATTGGGATGACAGCGGCA
TGTCTCGGCAGTGGTTCGTGTGCGACGACCAGGATTGTCGGCCAGTGGAT
GAAGCCAACGTGCGTACCGCGGCGGCGTACGTGTTATTTTACCGTCGTCG
GCCGCTGATGCCGGCCCTGTACGACCTGTTCGCGGTGTCCAACCACATGG
GAGGTATGGGACATGGACACTACACGGCGTTCGTGCGGGATTGGGATGAC
AGCGGCATGTCTCGGCAGTGGTTCGTGTGCGACGACCAGGATTGTCGGCC
AGTGGATGAAGCCAACGTGCGTACCGCGGCGGCGTACGTGTTATTTTACC
GTCGTCGGCCGCTG
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