mRNA_H-paniculata_contig2234.5945.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2234.5945.1
Unique NamemRNA_H-paniculata_contig2234.5945.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2234.5945.1 vs. uniprot
Match: D8LK98_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK98_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 7.080e-18
Identity = 52/65 (80.00%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:   34 RYMAIVDAASGNSALD-SSTSEH-DTSPSEDDGGMMAEILTDRLMEVASKMEASAPQPAEELSDG 222
            RYMAIV+AA+  SALD SSTSEH DTSPSEDDGGMMAEILTDRLMEV SKME SA  P  +LSDG
Sbjct:  662 RYMAIVEAANVKSALDNSSTSEHTDTSPSEDDGGMMAEILTDRLMEVCSKMEQSAASPEADLSDG 726
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2234.5945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK98_ECTSI7.080e-1880.00Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2234contigH-paniculata_contig2234:21258..21503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue7.4e-15
Seed eggNOG ortholog2880.D8LK98
KEGG koko:K21411
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03400
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.762452-CDS-H-paniculata_contig2234:21257..215031622929619.762452-CDS-H-paniculata_contig2234:21257..21503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2234 21258..21503 +
1691480938.2278311-CDS-H-paniculata_contig2234:21257..215031691480938.2278311-CDS-H-paniculata_contig2234:21257..21503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2234 21258..21503 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2234.5945.1prot_H-paniculata_contig2234.5945.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2234 21258..21503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2234.5945.1

>prot_H-paniculata_contig2234.5945.1 ID=prot_H-paniculata_contig2234.5945.1|Name=mRNA_H-paniculata_contig2234.5945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
PAVARAAPPAPRYMAIVDAASGNSALDSSTSEHDTSPSEDDGGMMAEILT
DRLMEVASKMEASAPQPAEELSDGEGQGDASG
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mRNA from alignment at H-paniculata_contig2234:21258..21503+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2234.5945.1 ID=mRNA_H-paniculata_contig2234.5945.1|Name=mRNA_H-paniculata_contig2234.5945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at H-paniculata_contig2234:21258..21503+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGCTGTGGCGCGGGCCGCTCCGCCGGCGCCCAGGTACATGGCCATCGT
GGACGCGGCTTCGGGCAACTCGGCCCTCGATTCATCCACGTCTGAGCACG
ACACTTCTCCTTCTGAGGATGATGGGGGCATGATGGCCGAGATCTTAACC
GACCGTCTGATGGAAGTCGCTAGCAAGATGGAGGCGTCGGCCCCGCAGCC
AGCGGAGGAGCTGAGCGACGGCGAAGGGCAGGGGGACGCCAGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2234:21258..21503+

>mRNA_H-paniculata_contig2234.5945.1 ID=mRNA_H-paniculata_contig2234.5945.1|Name=mRNA_H-paniculata_contig2234.5945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig2234:21258..21503+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGCTGTGGCGCGGGCCGCTCCGCCGGCGCCCAGGTACATGGCCATCGT
GGACGCGGCTTCGGGCAACTCGGCCCTCGATTCATCCACGTCTGAGCACG
ACACTTCTCCTTCTGAGGATGATGGGGGCATGATGGCCGAGATCTTAACC
GACCGTCTGATGGAAGTCGCTAGCAAGATGGAGGCGTCGGCCCCGCAGCC
AGCGGAGGAGCTGAGCGACGGCGAAGGGCAGGGGGACGCCAGCGGGCCAG
CTGTGGCGCGGGCCGCTCCGCCGGCGCCCAGGTACATGGCCATCGTGGAC
GCGGCTTCGGGCAACTCGGCCCTCGATTCATCCACGTCTGAGCACGACAC
TTCTCCTTCTGAGGATGATGGGGGCATGATGGCCGAGATCTTAACCGACC
GTCTGATGGAAGTCGCTAGCAAGATGGAGGCGTCGGCCCCGCAGCCAGCG
GAGGAGCTGAGCGACGGCGAAGGGCAGGGGGACGCCAGCGGG
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