mRNA_H-paniculata_contig2234.5944.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2234.5944.1
Unique NamemRNA_H-paniculata_contig2234.5944.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2234.5944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2234contigH-paniculata_contig2234:15178..17097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1057
Cds size594
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2234.5944.1prot_H-paniculata_contig2234.5944.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2234 15641..17097 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.6863847-UTR-H-paniculata_contig2234:15177..156401622929619.6863847-UTR-H-paniculata_contig2234:15177..15640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2234 15178..15640 +
1691480938.1998398-UTR-H-paniculata_contig2234:15177..156401691480938.1998398-UTR-H-paniculata_contig2234:15177..15640Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2234 15178..15640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.7001095-CDS-H-paniculata_contig2234:15640..159991622929619.7001095-CDS-H-paniculata_contig2234:15640..15999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2234 15641..15999 +
1691480938.208265-CDS-H-paniculata_contig2234:15640..159991691480938.208265-CDS-H-paniculata_contig2234:15640..15999Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2234 15641..15999 +
1622929619.7158697-CDS-H-paniculata_contig2234:16862..170971622929619.7158697-CDS-H-paniculata_contig2234:16862..17097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2234 16863..17097 +
1691480938.2192745-CDS-H-paniculata_contig2234:16862..170971691480938.2192745-CDS-H-paniculata_contig2234:16862..17097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2234 16863..17097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2234.5944.1

>prot_H-paniculata_contig2234.5944.1 ID=prot_H-paniculata_contig2234.5944.1|Name=mRNA_H-paniculata_contig2234.5944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=198bp
MPAALAHTRGWRGRSQPAGSSGVPSSGEEHIARLHQPTKVESPIALTVSS
HSRYSWKGVRNSGASGATLAAGAGATQHHHQRGSSANNNEVWERRDGQME
RYNNGASSDQPTAAVVEERRQPAFEAYAVDDGVAYGQTDWISSSGSGKTE
INHHHHRRKSSSNDPAASVAAAAAAAAAAAAASSLAHNTGGNSSSQSG
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mRNA from alignment at H-paniculata_contig2234:15178..17097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2234.5944.1 ID=mRNA_H-paniculata_contig2234.5944.1|Name=mRNA_H-paniculata_contig2234.5944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1920bp|location=Sequence derived from alignment at H-paniculata_contig2234:15178..17097+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTCACAAACGAACCCGCGTACCACCAAGACGTCCCAAACACGACAGTA
CAAAAACGGTTTTGGCCAAACCGGAAAAAAAAAAACACGAGGCCAGGGTG
TTGGGTGTTGTTGTGGATTTGCGCCCCAGACTACAAAGCAGTGCCTTCGT
GCCCCCCACAGGGCATCCAGAGGGTCTGGTGGTTCGATCTACCCTGCTTC
AACCCACATTGTCATCAGCCGAGTGGGCGTGGCCTTCCCCAGTTTGGGGT
CAATCACTCATACCAGTCCGATTCTTCATTTGCGAACGAACCTGATCCTG
AATCGATCCAAGAGGAAGAGGGGGCATCGTGAAGTTCGCGCTAGGTCCCC
AGAAACACGAGGGCCGTAATAAGGGCTATATATTCTCTATTCTCTCCAAC
GAGGCTGCTGTAGCTGGTTGTGGGAATAGTTGGTTTTTTTGCGACTGCAG
GAGGAGGAGTGCCATGCCGGCTGCTTTGGCGCACACAAGAGGTTGGCGTG
GTCGATCTCAGCCTGCCGGCTCATCTGGCGTGCCCAGCTCAGGTGAAGAG
CACATCGCGCGGCTTCACCAGCCGACCAAGGTGGAGTCGCCAATCGCGCT
CACGGTTTCCTCCCATTCTCGGTACAGCTGGAAGGGAGTAAGGAACAGTG
GGGCGTCCGGGGCTACTCTCGCCGCGGGGGCAGGGGCAACACAACATCAT
CACCAGCGAGGAAGCAGTGCGAATAATAATGAGGTTTGGGAAAGACGCGA
CGGGCAAATGGAACGATATAATAATGGGGCGAGTAGTGATCAGCCAACAG
CAGCAGTTGTTGAAGAACGAAGGTATGTCAGAGTATTGATGTTTTGATTC
ATGTGCGCGTGGAAGGATTAGAGAGGGTTGAAAAATTTCACTGACTGGGT
ATCATCCCAAGATACAGAATACCCTGACTGTCCTGCATTCAGGGTTGAGT
ATCTCGTGATGACTGCCTACCATAGTGTTCAGAGGATAAGGGGGTAAATA
CTCGTTGCTGGCCGAGGGTTGCTTGCTATTTTATCGTCTTAAACAGACAG
ATCACATTTCACATTTCGTTAGCTGAAGGCCCATCCTTTGTGGATCATTT
TTTTTTTAACTCTTGAATTGTATTCAAAGGGGGCCTTTTTTTTTAACTCT
TGAATTGTATTCAAAGGGGGCCGCATCACAGATCACAGACAAAGACCCTT
CTTTGGATCCATGCCCTGCGATCGTCAGAATCTGTGCCAGCCACTGCTAG
CTTAGCGATACGCGTATGTGGATCATATGATTGGCGACAGAAAAGGTTCA
CGCTCTAAGTCTGTAAGCCTCTTGACAGCCAAAATACATACACTTGTGTA
TCTGGAAGCTCGTGGTTCGTGGTGTTTTTTGTTTTTTGTATGTCCTGCTC
TTTGGTGCTCTGTCACGTTCGTCAGGAAGACTCAAAAACTTTGGGGCTTC
GCATATTTCAAAACTTTCGGCAGTGCTGGCTTGCCACACCCAAACGAGCC
ATTAAAAACACTCCGATATTGACAGCGGACAGTCCTGTTTCACCGTATTT
ATAACACTGACTGTTGTTCTCTGTATGAAGTCAGAAACAACCGTTGTGCA
TCCCAGAAACAGATTTGGATCAACAGCGAATCCTGGAATCCTGTCCTGCC
TCCCTCCCTCCCTCACCCTCTGTCGAACCTCACAGACAACCTGCCTTCGA
AGCCTACGCGGTGGACGACGGGGTGGCATACGGCCAGACAGACTGGATAT
CTTCTTCCGGCAGCGGTAAAACCGAGATTAATCACCATCACCACCGCCGA
AAAAGCAGCAGCAACGACCCTGCAGCATCAGTTGCCGCCGCTGCCGCTGC
CGCTGCCGCTGCCGCTGCTGCTTCTTCCTTAGCCCATAACACTGGGGGCA
ACAGTAGCAGTCAATCCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig2234:15178..17097+

>mRNA_H-paniculata_contig2234.5944.1 ID=mRNA_H-paniculata_contig2234.5944.1|Name=mRNA_H-paniculata_contig2234.5944.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig2234:15178..17097+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGGCTGCTTTGGCGCACACAAGAGGTTGGCGTGGTCGATCTCAGCC
TGCCGGCTCATCTGGCGTGCCCAGCTCAGGTGAAGAGCACATCGCGCGGC
TTCACCAGCCGACCAAGGTGGAGTCGCCAATCGCGCTCACGGTTTCCTCC
CATTCTCGGTACAGCTGGAAGGGAGTAAGGAACAGTGGGGCGTCCGGGGC
TACTCTCGCCGCGGGGGCAGGGGCAACACAACATCATCACCAGCGAGGAA
GCAGTGCGAATAATAATGAGGTTTGGGAAAGACGCGACGGGCAAATGGAA
CGATATAATAATGGGGCGAGTAGTGATCAGCCAACAGCAGCAGTTGTTGA
AGAACGAAGATGCCGGCTGCTTTGGCGCACACAAGAGGTTGGCGTGGTCG
ATCTCAGCCTGCCGGCTCATCTGGCGTGCCCAGCTCAGGTGAAGAGCACA
TCGCGCGGCTTCACCAGCCGACCAAGGTGGAGTCGCCAATCGCGCTCACG
GTTTCCTCCCATTCTCGGTACAGCTGGAAGGGAGTAAGGAACAGTGGGGC
GTCCGGGGCTACTCTCGCCGCGGGGGCAGGGGCAACACAACATCATCACC
AGCGAGGAAGCAGTGCGAATAATAATGAGGTTTGGGAAAGACGCGACGGG
CAAATGGAACGATATAATAATGGGGCGAGTAGTGATCAGCCAACAGCAGC
AGTTGTTGAAGAACGAAGACAACCTGCCTTCGAAGCCTACGCGGTGGACG
ACGGGGTGGCATACGGCCAGACAGACTGGATATCTTCTTCCGGCAGCGGT
AAAACCGAGATTAATCACCATCACCACCGCCGAAAAAGCAGCAGCAACGA
CCCTGCAGCATCAGTTGCCGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTG
CTGCTTCTTCCTTAGCCCATAACACTGGGGGCAACAGTAGCAGTCAATCC
GGCACAACCTGCCTTCGAAGCCTACGCGGTGGACGACGGGGTGGCATACG
GCCAGACAGACTGGATATCTTCTTCCGGCAGCGGTAAAACCGAGATTAAT
CACCATCACCACCGCCGAAAAAGCAGCAGCAACGACCCTGCAGCATCAGT
TGCCGCCGCTGCCGCTGCCGCTGCCGCTGCCGCTGCTGCTTCTTCCTTAG
CCCATAACACTGGGGGCAACAGTAGCAGTCAATCCGGC
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