mRNA_H-paniculata_contig22332.5941.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22332.5941.1
Unique NamemRNA_H-paniculata_contig22332.5941.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22332.5941.1 vs. uniprot
Match: D7G862_ECTSI (Pc13g00620 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G862_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 2.340e-40
Identity = 78/124 (62.90%), Postives = 93/124 (75.00%), Query Frame = 1 
Query:    1 SPMNVLAISAYLFNLGFFKLAVLGDYQSSADVLKQAYTLRTPMLGETHELSVQVVVSRGWALTLTGQTELAVDELTSCAEMLLAAGQAPAAERLLRQAMEMAEAPLGVNTYAHVCYTQHINFLK 372
            S +  L ISA LFNLGF +LAVLG++ S+A VL+QA  LR  +LGE H L++Q VVSRGWALTLTG T LAV+ELTS AE LL+AGQ  AA+RLLRQ ++    PLG  TYAH CYTQH N L+
Sbjct:  272 SALRDLVISALLFNLGFLRLAVLGEFSSAASVLQQAIELRKAVLGEAHSLTMQAVVSRGWALTLTGDTLLAVEELTSAAEALLSAGQPHAADRLLRQGLQQGYDPLGGATYAHACYTQHSNMLR 395
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22332.5941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G862_ECTSI2.340e-4062.90Pc13g00620 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22332contigH-paniculata_contig22332:2626..3917 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size372
Cds size366
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22332.5941.1prot_H-paniculata_contig22332.5941.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22332 2626..3911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.2298236-CDS-H-paniculata_contig22332:2625..27671622929619.2298236-CDS-H-paniculata_contig22332:2625..2767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22332 2626..2767 -
1691480938.0977495-CDS-H-paniculata_contig22332:2625..27671691480938.0977495-CDS-H-paniculata_contig22332:2625..2767Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22332 2626..2767 -
1622929619.2444308-CDS-H-paniculata_contig22332:3687..39111622929619.2444308-CDS-H-paniculata_contig22332:3687..3911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22332 3688..3911 -
1691480938.1073935-CDS-H-paniculata_contig22332:3687..39111691480938.1073935-CDS-H-paniculata_contig22332:3687..3911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22332 3688..3911 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929619.2604327-UTR-H-paniculata_contig22332:3911..39171622929619.2604327-UTR-H-paniculata_contig22332:3911..3917Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22332 3912..3917 -
1691480938.1202996-UTR-H-paniculata_contig22332:3911..39171691480938.1202996-UTR-H-paniculata_contig22332:3911..3917Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22332 3912..3917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22332.5941.1

>prot_H-paniculata_contig22332.5941.1 ID=prot_H-paniculata_contig22332.5941.1|Name=mRNA_H-paniculata_contig22332.5941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=122bp
MNVLAISAYLFNLGFFKLAVLGDYQSSADVLKQAYTLRTPMLGETHELSV
QVVVSRGWALTLTGQTELAVDELTSCAEMLLAAGQAPAAERLLRQAMEMA
EAPLGVNTYAHVCYTQHINFLK
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mRNA from alignment at H-paniculata_contig22332:2626..3917-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22332.5941.1 ID=mRNA_H-paniculata_contig22332.5941.1|Name=mRNA_H-paniculata_contig22332.5941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1292bp|location=Sequence derived from alignment at H-paniculata_contig22332:2626..3917- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTCCGATGAACGTCCTGGCAATCTCGGCCTACCTCTTCAACCTCGGATT
TTTTAAGCTGGCAGTGCTGGGAGATTACCAGTCTTCGGCGGACGTCCTGA
AACAGGCGTACACGCTGAGGACGCCGATGCTCGGCGAGACGCATGAGCTA
AGCGTGCAGGTGGTGGTCAGTCGGGGGTGGGCGCTGACGTTGACTGGGCA
GACGGAATTGGCCGTGGATGAGCTCACAAGGTTAGTTAATTAATTAGCTT
GAGATCAATTTTAGGGAAGCTTCTTCCTTACTACTTGATACGATAAGGTG
GAATTCGTGGTCGTGGTTGTGGTCGTAGATTCGGATTTTTTTCTCCAATT
CTGTAGTGGAGTGAGTTTTGAAAGACGAATCTTTGTGCAGATGTGGTGAG
TCGTTGTGCTTGCGTGGGGTCGGAGATAAACGTACGGAATGGAGTATGAT
TGCACGGGCATAGCCTAGGCGTGGCTCTACTACTAGTTTAGGGGGAAAAA
ATCATCAAGGTCACCTTCCAGAACGTTTCGATCCAAGCGAGAGCATGCTG
CTAATGTAGTTATCCAAGTAAACGCTTTACCCTGTATTTGACAGGGACCC
TTGTGAAACGCAGCGCAGCGCTGGGCGGGCGGGAAACGAGCGTATCGCAC
CGTCTAGGCGCTGTAGAGATATATGTTCAATGCTTGACCCCTCTGACTAT
TATGACATGAGTTGTCCCCCTCTTTCGCGTTATAGCTTGTTCTTGACAGC
TTCACCGCTGCACGGACACGCACACATTAGGAGAAAAAAAAATACAACCT
ACGTGATCGTTGGCACATGCACAACATATACGAGCATAATGTAGTGAGGA
ACGAATTAAAATCACATTGAGGTGAGGTTGTGGTGTTGAGGTGTATACTA
GCGTGTTTTTTTTTTTTTTTTTGTCTGTCGCGTTTACAGTTTATACGACG
GCACAAGAAAAATAGCAGAATTTTACCGTCACTCCTTGCCCACCCACCTA
CCCATCCTTGCCCACTCACCCACTCACCCTTGGCCGCCCCCTGTCCTCAC
GATGTTGAATTTACGTATGTATGAAAAAAAATATATATATATATATATCC
ATCGTTTTTCGCTGGACCTTCGCGGACATTCCTGTTGCGAAATGTTGCAG
CTGCGCGGAAATGCTGTTGGCGGCGGGCCAGGCGCCTGCGGCGGAGCGAC
TCCTTCGGCAGGCGATGGAGATGGCGGAGGCCCCACTCGGGGTCAACACG
TATGCTCACGTGTGCTACACGCAGCACATCAACTTTCTCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig22332:2626..3917-

>mRNA_H-paniculata_contig22332.5941.1 ID=mRNA_H-paniculata_contig22332.5941.1|Name=mRNA_H-paniculata_contig22332.5941.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at H-paniculata_contig22332:2626..3917- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACGTCCTGGCAATCTCGGCCTACCTCTTCAACCTCGGATTTTTTAA
GCTGGCAGTGCTGGGAGATTACCAGTCTTCGGCGGACGTCCTGAAACAGG
CGTACACGCTGAGGACGCCGATGCTCGGCGAGACGCATGAGCTAAGCGTG
CAGGTGGTGGTCAGTCGGGGGTGGGCGCTGACGTTGACTGGGCAGACGGA
ATTGGCCGTGGATGAGCTCACAAGATGAACGTCCTGGCAATCTCGGCCTA
CCTCTTCAACCTCGGATTTTTTAAGCTGGCAGTGCTGGGAGATTACCAGT
CTTCGGCGGACGTCCTGAAACAGGCGTACACGCTGAGGACGCCGATGCTC
GGCGAGACGCATGAGCTAAGCGTGCAGGTGGTGGTCAGTCGGGGGTGGGC
GCTGACGTTGACTGGGCAGACGGAATTGGCCGTGGATGAGCTCACAAGCT
GCGCGGAAATGCTGTTGGCGGCGGGCCAGGCGCCTGCGGCGGAGCGACTC
CTTCGGCAGGCGATGGAGATGGCGGAGGCCCCACTCGGGGTCAACACGTA
TGCTCACGTGTGCTACACGCAGCACATCAACTTTCTCAAGCTGCGCGGAA
ATGCTGTTGGCGGCGGGCCAGGCGCCTGCGGCGGAGCGACTCCTTCGGCA
GGCGATGGAGATGGCGGAGGCCCCACTCGGGGTCAACACGTATGCTCACG
TGTGCTACACGCAGCACATCAACTTTCTCAAG
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