mRNA_H-paniculata_contig2231.5936.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2231.5936.1 vs. uniprot
Match: A0A6H5JG16_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JG16_9PHAE) HSP 1 Score: 234 bits (597), Expect = 5.740e-64 Identity = 187/467 (40.04%), Postives = 233/467 (49.89%), Query Frame = 2
Query: 512 MLLILALLFFPCAVVGAFVTTADDRDLLAFQSPGGLFSSVDHPLCGRPPAAAKDAVVVARSPGYSCASSRHRQRRAPAVTMLVNDASSLPSIRSLGSSGNHNNNPDQCNRVVGRPSSLLVWPPASAAGVMQDMMFGQGIAANSNXXXXXXXXXXXXXX----DSDSALRAMSIPARCALPSVDLLREAYGPRRSFWGDLSARETRIFYKELLPVSIKLEALAGRHLNDSDDP------AAGDAADVVDLRHSVGESGTDGEVAARNGVEGESIVRTVFGGGVLTLEEQARLASTARHAARLYARERCALPSRVVAHLYDGLRHLKNYGTFRVTGMTWEELWAKYEAQVRKEHPVALSPADLKERVCLRILEKSCSTSQAFDNLAGLGGRDLETLGADIHERGESEILSATATAAAVAVIPVGGTAAAERAEACAANSTSEALERVSAVESAAAVAGALRLTRLVKPF 1882
+L +L LL CA+V F+ DL A + + P GR +AVV G ++ R++ A+TML R G S +WP S +G + G G + N +SDSAL AM+IPARCALPSVDLLR+AYGPRR FWGDL+ ETR FY ELLPVS+ ++A+ + L D ++ + G A VVD+ + + G E F G TLEE+ARLAS ARHAARLY RERC LPSRVVAHLYDGLRHLK +G+FRVTG TW ELW KYE ++R E P +L DLK +CLRILEKSCSTS+ F+NL+G DL + D L+ TA + EA AA ESAAA AGALRL L++PF
Sbjct: 6 LLALLPLLSAACALVSGFI----GDDLSAARGSLAFCLQPELPRHGR-----SEAVV-----GKDSSTVGPRRQEKTAITMLTT------------------------TRTFGAGS---MWPATSPSGGI-----GSGASRNDGASPGRRRPRARTGGSSSANSDSALHAMAIPARCALPSVDLLRQAYGPRRHFWGDLTPAETRRFYHELLPVSVYVDAVGAKALCDGNERPLGGGMSGGGLATVVDVAN------------RQQGGHWE-----YFFGAAETLEERARLASMARHAARLYVRERCKLPSRVVAHLYDGLRHLKRHGSFRVTGETWPELWDKYERKIRSEDP-SLEGEDLKTAICLRILEKSCSTSEMFNNLSGCS--DLNSFLPDT--------LTETAPT--------------QHQEAFAA-------------ESAAACAGALRLIPLMQPF 371
BLAST of mRNA_H-paniculata_contig2231.5936.1 vs. uniprot
Match: A0A835YPF0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPF0_9STRA) HSP 1 Score: 171 bits (432), Expect = 2.650e-43 Identity = 101/218 (46.33%), Postives = 123/218 (56.42%), Query Frame = 2
Query: 989 SDSALRAMSIPARCALPSVDLLREAYGPRRSFWGDLSARETRIFYKELLPVSI-KLEALAGRHLNDSDDPAAGDAADVVDLRHSVGESGTDGEVAARNGVEGESIVRTVFGGGVLTLEEQARLASTARHAARLYARERCALPSRVVAHLYDGLRHLKNYGTFRVTGMTWEELWAKYEAQVRKEHPVALSPADLKERVCLRILEKSCSTSQAFDNLAGL 1639
S + L A +P + VDLLR YGP R+FWGDLSA++TR FY +LLPVS+ +LE A D+ P LTLEE+AR AS ARHAARLYARERCALPSR+ A LYDG RHL+ YGT+ +G TW+ELWAKYE QVR E +++ VC RILEKSCST++ FD L G+
Sbjct: 67 SSTKLAAAVLPDPYPVAEVDLLRRIYGPARNFWGDLSAQQTRAFYHDLLPVSLLQLEQEAA----DASAP--------------------------------------------LTLEERARRASMARHAARLYARERCALPSRITAALYDGFRHLQRYGTWNASGQTWDELWAKYEVQVRAELGPQAGEEAIRDGVCWRILEKSCSTNKMFDRLTGV 236
BLAST of mRNA_H-paniculata_contig2231.5936.1 vs. uniprot
Match: A0A836C9L0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9L0_9STRA) HSP 1 Score: 162 bits (411), Expect = 1.450e-40 Identity = 97/216 (44.91%), Postives = 120/216 (55.56%), Query Frame = 2
Query: 995 SALRAMSIPARCALPSVDLLREAYGPRRS-FWGDLSARETRIFYKELLPVSIKLEALAGRHLNDSDDPAAGDAADVVDLRHSVGESGTDGEVAARNGVEGESIVRTVFGGGVLTLEEQARLASTARHAARLYARERCALPSRVVAHLYDGLRHLKNYGTFRVTGMTWEELWAKYEAQVRKEHPVALSPADLKERVCLRILEKSCSTSQAFDNLAGL 1639
S L A +P + + LR+ YGPRR+ FWGDLS ++TR FY ELLPVS++ EA DD + LTLEE+AR AS ARHAARLYARERCALP R+ A LYDG RH + YGT+ +G TW+ELWAKYE QVR+E S +++ VC RILEKSC T++ FD LAG+
Sbjct: 78 SHLSAAVLPDPYPVADLQSLRKVYGPRRNKFWGDLSNKQTRAFYHELLPVSLQFEA---------DDLCS------------------------------------------LTLEERARRASMARHAARLYARERCALPGRLTAVLYDGFRHFRKYGTWNSSGQTWDELWAKYEGQVRRECGPEASEDAIRDAVCRRILEKSCCTNKMFDRLAGM 242
BLAST of mRNA_H-paniculata_contig2231.5936.1 vs. uniprot
Match: A0A7S2V3N8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3N8_9STRA) HSP 1 Score: 126 bits (316), Expect = 3.410e-28 Identity = 74/202 (36.63%), Postives = 103/202 (50.99%), Query Frame = 2
Query: 1034 LPSVDLLREAYGPRRSFWGDLSARETRIFYKELLPVSIKLEALAGRHLNDSDDPAAGDAADVVDLRHSVGESGTDGEVAARNGVEGESIVRTVFGGGVLTLEEQARLASTARHAARLYARERCALPSRVVAHLYDGLRHLKNYGTFRVTGMTWEELWAKYEAQVRKEHPVALSPADLKERVCLRILEKSCSTSQAFDNLAGL 1639
L +VD R+ YG + +WGD S+ ETR Y ELLPVS +D H + +LEE+A+ AS ARH+AR+YARERC LP R+VA LYDG R +++G + G+TWE++W KYE +V KE P +S DL+E V RI++ +C T+ FD+ G+
Sbjct: 107 LTTVDDFRQTYGHNKHWWGDFSSSETRKLYHELLPVSFA----------------------SLDQTHGM------------------------------SLEERAKAASAARHSARIYARERCTLPGRIVAQLYDGFRSWRSHGEWNPDGLTWEQIWLKYEKRVLKELP-NISNDDLEEEVYRRIIQSACRTNNVFDSATGI 255
BLAST of mRNA_H-paniculata_contig2231.5936.1 vs. uniprot
Match: K8YVG2_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVG2_NANGC) HSP 1 Score: 116 bits (290), Expect = 6.410e-24 Identity = 81/205 (39.51%), Postives = 103/205 (50.24%), Query Frame = 2
Query: 1034 LPSVDLLREAYGPRRSFWGDLSARETRIFYKELLPVSIKLEALAGRHLNDSDDPAAGDAADVVDLRHSVGESGTDGEVAARNGVEGESIVRTVFGGGVLTLEEQARLASTARHAARLYARERCALPSRVVAHLYDGLRHLKNYGTFRVTGMTWEELWAKYEAQVRKE-----HPVALSPADLKERVCLRILEKSCSTSQAFDNLA 1633
+ +VD LR +G + SFWGDL+ ETR Y +LLP RHL D A DA L +E+ ARLASTARHAARLYARER +LP R+ A LYDG RHL +G + TGM++EE+W KYE++++KE + +L V RILEKSC T+ FD A
Sbjct: 124 ITTVDGLRTRHG-QGSFWGDLNHVETRYVYHQLLP----------RHLLQ-DAQAHPDA---------------------------------------LAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGRAGQVGQEELNRMVAFRILEKSCETNSGFDRFA 277
BLAST of mRNA_H-paniculata_contig2231.5936.1 vs. uniprot
Match: W7TMN0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMN0_9STRA) HSP 1 Score: 116 bits (290), Expect = 1.340e-23 Identity = 81/205 (39.51%), Postives = 103/205 (50.24%), Query Frame = 2
Query: 1034 LPSVDLLREAYGPRRSFWGDLSARETRIFYKELLPVSIKLEALAGRHLNDSDDPAAGDAADVVDLRHSVGESGTDGEVAARNGVEGESIVRTVFGGGVLTLEEQARLASTARHAARLYARERCALPSRVVAHLYDGLRHLKNYGTFRVTGMTWEELWAKYEAQVRKE-----HPVALSPADLKERVCLRILEKSCSTSQAFDNLA 1633
+ +VD LR +G + SFWGDL+ ETR Y +LLP RHL D A DA L +E+ ARLASTARHAARLYARER +LP R+ A LYDG RHL +G + TGM++EE+W KYE++++KE + +L V RILEKSC T+ FD A
Sbjct: 124 ITTVDGLRTRHG-QGSFWGDLNHVETRYVYHQLLP----------RHLLQ-DAQAHPDA---------------------------------------LAVEDLARLASTARHAARLYARERSSLPLRLAAGLYDGFRHLSTFGRWSWTGMSYEEVWCKYESKIQKELAEEGRAGQVGQEELNRMVAFRILEKSCETNSGFDRFA 277
BLAST of mRNA_H-paniculata_contig2231.5936.1 vs. uniprot
Match: A0A6U0ZDZ1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0ZDZ1_9STRA) HSP 1 Score: 102 bits (254), Expect = 4.830e-20 Identity = 69/209 (33.01%), Postives = 102/209 (48.80%), Query Frame = 2
Query: 1040 SVDLLREAYGPRRSFWGDLSARETRIFYKELLPVSIKLEALAGRHLNDSDDPAAGDAADVVDLRHSVGESGTDGEVAARNGVEGESIVRTVFGGGVLTLEEQARLASTARHAARLYARERCALPSRVVAHLYDGLRHLKNYGTFRVTGMTWEELWAKYEAQVRKEHPVALSPADLKERVCLRILEKSCSTSQAFDNLAGLGGRDLETLG 1666
+V++LR+ YG R ++WGDLS+R+TR+ Y+ LLP I L+ D L L+++A +AS AR+AA++YARERC +P RV A+ YD R+ G + TGMT +++W KYE +++ E ++ L + + RIL KSCST+ D L LG L LG
Sbjct: 104 TVNILRQEYGERANWWGDLSSRQTRLLYQRLLPRVI----LSEDEFQD------------------------------------------------LPLKDRAYIASMARYAAKIYARERCRVPGRVAANFYDATRYAIRTGRWSWTGMTVDDIWNKYEREIKSELGEDVTEDKLYKSLYERILSKSCSTNPFIDQLT-LGPGKLRDLG 259
BLAST of mRNA_H-paniculata_contig2231.5936.1 vs. uniprot
Match: A0A7S2I6R8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I6R8_9STRA) HSP 1 Score: 100 bits (248), Expect = 2.310e-18 Identity = 74/213 (34.74%), Postives = 95/213 (44.60%), Query Frame = 2
Query: 1040 SVDLLREAYGPRRS-FWGDLSARETRIFYKELLPVSIKLEALAGRHLNDSDDPAAGDAADVVDLRHSVGESGTDGEVAARNGVEGESIVRTVFGGGVLTLEEQARLASTARHAARLYARERCALPSRVVAHLYDGLRHLKNYGTFRVTGMTWEELWAKYEAQV---------------RKEHPVALSPADLKERVCLRILEKSCSTSQAFDNL 1630
SV LR +G R+ WGD TR Y LLP AL G H E+ G++ +E A LA AR AA+ YARERC +P RV+A YDG R KNYG F V GM+W+++W KYE QV R++ AL D+ E+VCL+ILE+SC ++ A D L
Sbjct: 78 SVSTLRSTFGTNRNKLWGDYDPETTRRLYHTLLP-----RALLGLH-----------------------------EL------------------GLMKPDELAPLAYEARTAAKKYARERCVVPGRVLAMAYDGYRQWKNYGKFNVEGMSWDQIWQKYERQVVNEQAQRKEDEDVTERRKQARALEE-DITEQVCLKILERSCISNDAVDRL 237
BLAST of mRNA_H-paniculata_contig2231.5936.1 vs. uniprot
Match: A0A7S2MYH9_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MYH9_9STRA) HSP 1 Score: 100 bits (248), Expect = 7.260e-18 Identity = 74/213 (34.74%), Postives = 95/213 (44.60%), Query Frame = 2
Query: 1040 SVDLLREAYGPRRS-FWGDLSARETRIFYKELLPVSIKLEALAGRHLNDSDDPAAGDAADVVDLRHSVGESGTDGEVAARNGVEGESIVRTVFGGGVLTLEEQARLASTARHAARLYARERCALPSRVVAHLYDGLRHLKNYGTFRVTGMTWEELWAKYEAQV---------------RKEHPVALSPADLKERVCLRILEKSCSTSQAFDNL 1630
SV LR +G R+ WGD TR Y LLP AL G H E+ G++ +E A LA AR AA+ YARERC +P RV+A YDG R KNYG F V GM+W+++W KYE QV R++ AL D+ E+VCL+ILE+SC ++ A D L
Sbjct: 197 SVSTLRSTFGTNRNKLWGDYDPETTRRLYHTLLP-----RALLGLH-----------------------------EL------------------GLMKPDELAPLAYEARTAAKKYARERCVVPGRVLAMAYDGYRQWKNYGKFNVEGMSWDQIWQKYERQVVNEQAQRKEDEDVTERRKQARALEE-DITEQVCLKILERSCISNDAVDRL 356
BLAST of mRNA_H-paniculata_contig2231.5936.1 vs. uniprot
Match: A0A7S2RIY7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RIY7_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 2.610e-17 Identity = 67/216 (31.02%), Postives = 98/216 (45.37%), Query Frame = 2
Query: 986 DSDSALRAMSIPARCALPSVDLLREAYGPRRS-FWGDLSARETRIFYKELLPVSIKLEALAGRHLNDSDDPAAGDAADVVDLRHSVGESGTDGEVAARNGVEGESIVRTVFGGGVLTLEEQARLASTARHAARLYARERCALPSRVVAHLYDGLRHLKNYGTFRVTGMTWEELWAKYEAQVRKEHPVALSPADLKERVCLRILEKSCSTSQAFDNL 1630
D + R + AR VD LR +G R+ WGD A TR Y LLP + +++L +EG+ L +E A LA AR AA+ YARERC +P R+ + +DG R KNYGT+ G++WE++W KYE +V E+ + L +VCL+ILEK+C+++ D +
Sbjct: 71 DDEHVRRKLKFAARYT--DVDTLRRTFGTNRNKLWGDFDAETTRRLYHVLLPRA------------------------MLELYR----------------IEGQ-----------LRPQELAPLAYEARVAAKKYARERCVVPGRLFSMAFDGFRSWKNYGTWNAEGLSWEQIWQKYENEVLSENLLEDDKHALTHKVCLKILEKACASNPLVDKM 233 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2231.5936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2231.5936.1 >prot_H-paniculata_contig2231.5936.1 ID=prot_H-paniculata_contig2231.5936.1|Name=mRNA_H-paniculata_contig2231.5936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=503bp MLLILALLFFPCAVVGAFVTTADDRDLLAFQSPGGLFSSVDHPLCGRPPAback to top mRNA from alignment at H-paniculata_contig2231:10811..21852+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2231.5936.1 ID=mRNA_H-paniculata_contig2231.5936.1|Name=mRNA_H-paniculata_contig2231.5936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11042bp|location=Sequence derived from alignment at H-paniculata_contig2231:10811..21852+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2231:10811..21852+ >mRNA_H-paniculata_contig2231.5936.1 ID=mRNA_H-paniculata_contig2231.5936.1|Name=mRNA_H-paniculata_contig2231.5936.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3018bp|location=Sequence derived from alignment at H-paniculata_contig2231:10811..21852+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |