mRNA_H-paniculata_contig223.5934.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig223.5934.1
Unique NamemRNA_H-paniculata_contig223.5934.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig223.5934.1 vs. uniprot
Match: A0A835YJA7_9STRA (Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA7_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.430e-32
Identity = 52/70 (74.29%), Postives = 64/70 (91.43%), Query Frame = 1
Query:    1 VKHIIVCGHYDCGGVRAAMRNHDHGLIENWIMGIRDVARYHRKELKQLNDDEAIHRRLVELNVQEQCVKV 210
            V++II+CGHYDCGGV+AAMRNHDHG+IE WIMGIRDVARYHRKEL+ + D + +HRR+VELNVQEQ +K+
Sbjct:   85 VENIIICGHYDCGGVKAAMRNHDHGIIEQWIMGIRDVARYHRKELRAIKDPDLVHRRMVELNVQEQALKL 154          
BLAST of mRNA_H-paniculata_contig223.5934.1 vs. uniprot
Match: D8LLJ1_ECTSI (Carbonic anhydrase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ1_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 5.100e-30
Identity = 52/70 (74.29%), Postives = 63/70 (90.00%), Query Frame = 1
Query:    1 VKHIIVCGHYDCGGVRAAMRNHDHGLIENWIMGIRDVARYHRKELKQLNDDEAIHRRLVELNVQEQCVKV 210
            VK+II+CGHY+CGGVRAAM N+DHGL+ENW+MG+++VAR H+ EL  L DDE IHRRLVELNVQEQCVK+
Sbjct:  264 VKNIILCGHYECGGVRAAMANNDHGLVENWVMGVKEVARMHQDELMALGDDELIHRRLVELNVQEQCVKL 333          
BLAST of mRNA_H-paniculata_contig223.5934.1 vs. uniprot
Match: A0A6S9IM72_HETAK (Carbonic anhydrase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IM72_HETAK)

HSP 1 Score: 100 bits (250), Expect = 1.340e-24
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 VKHIIVCGHYDCGGVRAAMRNHDHGLIENWIMGIRDVARYHRKELKQLNDDEAIHRRLVELNVQEQCVKV 210
            V+ IIVCGHY+CGG++AA  NHDHGL+E+W+  IRD+ R H +EL+ +  +EA HRRLVELNVQEQC+ +
Sbjct:  125 VEDIIVCGHYECGGIKAACANHDHGLVEHWLRNIRDINRLHAEELEAIECEEARHRRLVELNVQEQCINL 194          
BLAST of mRNA_H-paniculata_contig223.5934.1 vs. uniprot
Match: A0A1Y2B9M4_9FUNG (Carbonic anhydrase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2B9M4_9FUNG)

HSP 1 Score: 100 bits (250), Expect = 2.350e-24
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 1
Query:    1 VKHIIVCGHYDCGGVRAAMRNHDHGLIENWIMGIRDVARYHRKELKQLNDDEAIHRRLVELNVQEQCVKV 210
            V HIIVCGHYDCG VR A +  DHG+IENW+  IRDVAR H  EL ++ D E  HRRLVELNVQEQC+ +
Sbjct:  139 VPHIIVCGHYDCGAVRGAHKQMDHGIIENWLRNIRDVARLHNTELTKIPDSEDRHRRLVELNVQEQCLNI 208          
BLAST of mRNA_H-paniculata_contig223.5934.1 vs. uniprot
Match: A0A356T1M8_9DELT (Carbonic anhydrase n=2 Tax=Myxococcales TaxID=29 RepID=A0A356T1M8_9DELT)

HSP 1 Score: 99.4 bits (246), Expect = 2.350e-24
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 VKHIIVCGHYDCGGVRAAMRNHDHGLIENWIMGIRDVARYHRKELKQLNDDEAIHRRLVELNVQEQCVKV 210
            V HI+VCGHY CGGVRAAM++ D GL+  W+  +RDV R HR+EL  + D+EA +RRLVELNVQEQC++V
Sbjct:   89 VDHIVVCGHYGCGGVRAAMKSQDLGLLNGWLREVRDVYRIHREELNAIEDEEARYRRLVELNVQEQCIRV 158          
BLAST of mRNA_H-paniculata_contig223.5934.1 vs. uniprot
Match: UPI001F5951DA (carbonic anhydrase n=1 Tax=Aestuariivivens sp. AH-MY3 TaxID=2913554 RepID=UPI001F5951DA)

HSP 1 Score: 98.2 bits (243), Expect = 5.900e-24
Identity = 43/70 (61.43%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 VKHIIVCGHYDCGGVRAAMRNHDHGLIENWIMGIRDVARYHRKELKQLNDDEAIHRRLVELNVQEQCVKV 210
            VKH++VCGHY CGGV+AAMR+ D G++  W+  IRDV R HR+EL  +ND+E  ++RLVELNVQEQC+ V
Sbjct:   89 VKHVVVCGHYFCGGVKAAMRSQDLGILNPWLRNIRDVYRTHREELNAINDEEERYKRLVELNVQEQCINV 158          
BLAST of mRNA_H-paniculata_contig223.5934.1 vs. uniprot
Match: A0A7S4HMY7_9EUKA (Carbonic anhydrase n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HMY7_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 8.330e-24
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 VKHIIVCGHYDCGGVRAAMRNHDHGL-IENWIMGIRDVARYHRKELKQLNDDEAIHRRLVELNVQEQCVKV 210
            V H+IVCGHYDCGGVRAAM N DH   +ENW+  +RDV R HR EL+ + D EA HRRLVELNV EQCV +
Sbjct:   68 VSHVIVCGHYDCGGVRAAMTNADHSSPLENWLRNVRDVYRLHRTELEAIEDVEARHRRLVELNVIEQCVNL 138          
BLAST of mRNA_H-paniculata_contig223.5934.1 vs. uniprot
Match: L1P0X6_9FLAO (Carbonic anhydrase n=2 Tax=Capnocytophaga TaxID=1016 RepID=L1P0X6_9FLAO)

HSP 1 Score: 97.1 bits (240), Expect = 2.170e-23
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 VKHIIVCGHYDCGGVRAAMRNHDHGLIENWIMGIRDVARYHRKELKQLNDDEAIHRRLVELNVQEQCVKV 210
            VKHI+VCGHYDCGGV+AAM+  D+GL+  W+  IRDV R H++EL  + D+E  +RRLVELNVQEQCV +
Sbjct:   91 VKHIVVCGHYDCGGVKAAMQAKDYGLLNPWLRTIRDVYRLHQEELDAIADNEERYRRLVELNVQEQCVNI 160          
BLAST of mRNA_H-paniculata_contig223.5934.1 vs. uniprot
Match: A0A2R3Z4L1_9FLAO (Carbonic anhydrase n=1 Tax=Gramella fulva TaxID=2126553 RepID=A0A2R3Z4L1_9FLAO)

HSP 1 Score: 96.3 bits (238), Expect = 3.320e-23
Identity = 42/70 (60.00%), Postives = 56/70 (80.00%), Query Frame = 1
Query:    1 VKHIIVCGHYDCGGVRAAMRNHDHGLIENWIMGIRDVARYHRKELKQLNDDEAIHRRLVELNVQEQCVKV 210
            V+HI+VCGHY CGGV+AAM + D GL+  W+  IRDV R+H+ ELK + D++A ++RLVELNVQEQC+ V
Sbjct:   89 VEHIVVCGHYYCGGVKAAMESTDMGLLNPWLRNIRDVYRFHKDELKDIEDEDARYKRLVELNVQEQCINV 158          
BLAST of mRNA_H-paniculata_contig223.5934.1 vs. uniprot
Match: A0A418M0P0_9BACT (Carbonic anhydrase n=3 Tax=Fibrisoma TaxID=861913 RepID=A0A418M0P0_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 3.790e-23
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 1
Query:    1 VKHIIVCGHYDCGGVRAAMRNHDHGLIENWIMGIRDVARYHRKELKQLNDDEAIHRRLVELNVQEQCVKV 210
            VKHIIVCGHY CGGV+AA+ + D G I  W+  I+DV R HR+EL Q+ D+EA HRRLV+LNV+EQC+ V
Sbjct:   90 VKHIIVCGHYGCGGVKAAVSHQDFGKINIWLRNIQDVYRLHREELNQITDEEARHRRLVDLNVREQCLNV 159          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig223.5934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJA7_9STRA1.430e-3274.29Carbonic anhydrase n=1 Tax=Tribonema minus TaxID=3... [more]
D8LLJ1_ECTSI5.100e-3074.29Carbonic anhydrase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6S9IM72_HETAK1.340e-2461.43Carbonic anhydrase n=1 Tax=Heterosigma akashiwo Ta... [more]
A0A1Y2B9M4_9FUNG2.350e-2465.71Carbonic anhydrase n=1 Tax=Rhizoclosmatium globosu... [more]
A0A356T1M8_9DELT2.350e-2462.86Carbonic anhydrase n=2 Tax=Myxococcales TaxID=29 R... [more]
UPI001F5951DA5.900e-2461.43carbonic anhydrase n=1 Tax=Aestuariivivens sp. AH-... [more]
A0A7S4HMY7_9EUKA8.330e-2466.20Carbonic anhydrase n=1 Tax=Prymnesium polylepis Ta... [more]
L1P0X6_9FLAO2.170e-2362.86Carbonic anhydrase n=2 Tax=Capnocytophaga TaxID=10... [more]
A0A2R3Z4L1_9FLAO3.320e-2360.00Carbonic anhydrase n=1 Tax=Gramella fulva TaxID=21... [more]
A0A418M0P0_9BACT3.790e-2362.86Carbonic anhydrase n=3 Tax=Fibrisoma TaxID=861913 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig223contigH-paniculata_contig223:44946..45448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue1.5e-24
Seed eggNOG ortholog2880.D8LLJ1
KEGG rclassRC02807
KEGG koko:K01673
KEGG ReactionR00132,R10092
KEGG Pathwayko00910,map00910
Hectar predicted targeting categoryother localisation
EggNOG free text desc.carbonate dehydratase activity
EggNOG OGsCOG0288@1,KOG1578@2759
EC4.2.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929618.3559935-CDS-H-paniculata_contig223:44945..450831622929618.3559935-CDS-H-paniculata_contig223:44945..45083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig223 44946..45083 +
1691480937.7834077-CDS-H-paniculata_contig223:44945..450831691480937.7834077-CDS-H-paniculata_contig223:44945..45083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig223 44946..45083 +
1622929618.371148-CDS-H-paniculata_contig223:45376..454481622929618.371148-CDS-H-paniculata_contig223:45376..45448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig223 45377..45448 +
1691480937.8030815-CDS-H-paniculata_contig223:45376..454481691480937.8030815-CDS-H-paniculata_contig223:45376..45448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig223 45377..45448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig223.5934.1prot_H-paniculata_contig223.5934.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig223 44946..45448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig223.5934.1

>prot_H-paniculata_contig223.5934.1 ID=prot_H-paniculata_contig223.5934.1|Name=mRNA_H-paniculata_contig223.5934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
VKHIIVCGHYDCGGVRAAMRNHDHGLIENWIMGIRDVARYHRKELKQLND
DEAIHRRLVELNVQEQCVKV
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mRNA from alignment at H-paniculata_contig223:44946..45448+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig223.5934.1 ID=mRNA_H-paniculata_contig223.5934.1|Name=mRNA_H-paniculata_contig223.5934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=503bp|location=Sequence derived from alignment at H-paniculata_contig223:44946..45448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAGCATATAATCGTGTGCGGGCATTACGATTGCGGAGGCGTGAGAGC GGCGATGCGTAACCACGACCATGGGCTGATCGAGAACTGGATAATGGGTA TCCGAGACGTGGCCAGATATCACCGAAAGGAGCTCAAGGTGACCCGAAAT AATGACAAAAAGCAGAGATATTAAAAGGAGGCGTGTAGATTCGTCTTGAC AGGGGGGTAATATGCAATTGTGTACATTTATTAGAATAAGGCTGTTGGTC GCAATATGGCTCACGAGTAGGTGAGTAGGTGGGTAGGTCTTTGAAGGGTT GGGTGTGCGGTGTTTATGAACAGGGCGTCGCCGTGTGATGACCGCAGAGT CCGCCTTCTCTTACGAGTTGAGTGTCTTGTTGTACTTTTTTGTGCGTGTC GCCTTTCTCTTGATTGCGTTTTTCTTTCCAGCAACTGAACGATGATGAGG CTATCCACCGTCGGCTGGTTGAACTTAACGTACAAGAGCAATGTGTGAAG GTG
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Coding sequence (CDS) from alignment at H-paniculata_contig223:44946..45448+

>mRNA_H-paniculata_contig223.5934.1 ID=mRNA_H-paniculata_contig223.5934.1|Name=mRNA_H-paniculata_contig223.5934.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig223:44946..45448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAGCATATAATCGTGTGCGGGCATTACGATTGCGGAGGCGTGAGAGC
GGCGATGCGTAACCACGACCATGGGCTGATCGAGAACTGGATAATGGGTA
TCCGAGACGTGGCCAGATATCACCGAAAGGAGCTCAAGGTGAAGCATATA
ATCGTGTGCGGGCATTACGATTGCGGAGGCGTGAGAGCGGCGATGCGTAA
CCACGACCATGGGCTGATCGAGAACTGGATAATGGGTATCCGAGACGTGG
CCAGATATCACCGAAAGGAGCTCAAGCAACTGAACGATGATGAGGCTATC
CACCGTCGGCTGGTTGAACTTAACGTACAAGAGCAATGTGTGAAGGTGCA
ACTGAACGATGATGAGGCTATCCACCGTCGGCTGGTTGAACTTAACGTAC
AAGAGCAATGTGTGAAGGTG
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