mRNA_H-paniculata_contig22295.5929.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A6H5L550_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L550_9PHAE) HSP 1 Score: 293 bits (750), Expect = 1.620e-91 Identity = 155/249 (62.25%), Postives = 185/249 (74.30%), Query Frame = 1
Query: 205 ETTVFPRELGWLPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTDDESFREFFSDVCN 951
E VFPRELG LP++LFHLRRGPLLGPLLQN DDPLC+RHLFLRGAL+ECLRMM P ++SLKA EAL L++A G+ + +G ++ R A AA G+ VPVETLAML DR+LVLDTHDRVFVWSG+AVCG EF+ VR+A F+ E +R+P A VVFLKDG+SWSRYLTSRLIPSHKDP+EEQ++GFP+LAGVP ++E LR KLP TDDES+REFF DVC+
Sbjct: 165 EDAVFPRELGRLPLQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSLVSLKAAEALACLTAA---GNGSGGDSGNTAKE------RVPTASTSAAAAAAGLS-----FPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRSFFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCD 399
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: D8LGM0_ECTSI (Protein transport protein SEC23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM0_ECTSI) HSP 1 Score: 219 bits (558), Expect = 5.670e-60 Identity = 117/207 (56.52%), Postives = 141/207 (68.12%), Query Frame = 1
Query: 337 GALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKAL--LKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTDDESFREFFSDVCN 951
GAL+ECLRMM P ++S KATEAL L++A G+G G+ G E A VPVETLAML DR+LVLDTHDRVFVWSG+AVCG EF+ VR+A +F+ E +R+P A VVFLKDG+SWSRYLTSRLIPSHKDP+EEQ++GFP+LAGVP ++E LR KLP TDDES+REFF DVC+
Sbjct: 554 GALEECLRMMEPSLVSFKATEALACLTAA--------------------GNGSGGDSGNTAKEGVPTASASAAAPPFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCD 740
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A835ZAM5_9STRA (Protein transport protein SEC23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAM5_9STRA) HSP 1 Score: 117 bits (292), Expect = 4.360e-24 Identity = 109/327 (33.33%), Postives = 141/327 (43.12%), Query Frame = 1
Query: 160 AVVSAVEAAQEEESAETTV-----FPRELGWLPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQ-------QQG-------------------------------DGRAGEGGEEDAEAAR--GIQRKKAL--------------LKMDAVPV--ETLAMLPDRILVLDTHDRVFVWSGAAVCG-VEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTDDESFREFFSDVCNA 954
A +A A+ S TV FP +L L L+HL RG LLG + + D+ C RHLFLR ++C RMM P + ATEA L P A++AG Q Q QQG DG GG A + G+ A+ ++M VPV ETLAMLP R+LV+DTHD ++VWSGA G +R A D + R+P A V L++G SW R+L RL PSH D E +G D A + L +LPHTDD + R+F V
Sbjct: 611 AARAAAAASARHPSTTNTVQTTQPFPPQLEGLVPLLYHLHRGALLGRMRLSADEVACARHLFLRAPAEDCARMMAPALCV--ATEAPLPLP---PLAGADAALAGAYTQQQELSAGAMQQGWRHSNQGELRDFGGGTGGGSXXXXXGVPSGRDGGLHTGGSLGVVAGKADGVITSSAVHNANVENINDDDDDVRMTLVPVAPETLAMLPHRVLVMDTHDALYVWSGARAAGDARARRLRDAAIDAAAAAAAARFPCAEVTVLREGQSWCRHLLCRLAPSHMDA--EVGRGRSDAA------IAELCVRLPHTDDLTLRQFTYSVVGG 924
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A6A7GB13_9CRUS (Protein transport protein SEC23 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GB13_9CRUS) HSP 1 Score: 112 bits (281), Expect = 9.430e-23 Identity = 74/258 (28.68%), Postives = 113/258 (43.80%), Query Frame = 1
Query: 178 EAAQEEESAETTVFPRELGWLPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTDDESFREFFSDVCN 951
++ Q E+ + L LP L+ LR+GP+LGPLLQN DD +R L+L +L + +R+M P +LS +L ++ +P+ LA+ +RIL LD H VF+WSG V G E+D R A + R+P + V K+ SS R+L RLIP+H D + +Q + FP L + L EK T++ S+R++ + N
Sbjct: 579 KSVQISENRKERSLEEHLATLPFMLYLLRQGPILGPLLQNPDDISYLRTLYLHASLQDTVRLMLPTLLSFN------------------------------------------------------SLGNVEELPLSNLALQSNRILCLDHHSHVFIWSGKEVSGSEYDSYRNACRERSLVTSTRRFPQSRVFQFKENSSDERWLRCRLIPAHNDSLAQQNEDFPQLDEMEPYLRSKLLEKFMRTNEPSYRQYLFQIFN 782
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A2P6N5N0_9EUKA (Protein transport protein SEC23 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N5N0_9EUKA) HSP 1 Score: 112 bits (279), Expect = 1.590e-22 Identity = 80/267 (29.96%), Postives = 120/267 (44.94%), Query Frame = 1
Query: 157 RAVVSAVEAAQEEESAETTVFPRELGWLPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGV----EFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTDDESFREFFSDV 945
++VV + + V P L LP RLF L+RGPLLGP+LQ++DD MR L ++ L + LRM+ P + + ++ RG Q L++ +P E LAM D+IL+LD H VF W G V + + + + K ++ RYP K+G+S +R++ RLIPSHKD EEQ++ FP + + ED L K TDD S+ ++F +
Sbjct: 514 QSVVKILRGCGKVSRRGGYVLPTHLSLLPKRLFMLQRGPLLGPILQHMDDIDYMRCLLIQANLQDSLRMIDPPLFMVDSS--------------------------------------------LRGEQP----LELYPLPTEDLAMQSDKILLLDHHTEVFRWLGGMVGRIHQTADLEGILKRCDEYVESISRHRYPHPSSHSFKEGTSMARWIQCRLIPSHKDTTEEQLENFPQMDELTEEDRRRLLSKFHRTDDLSYLQWFKKL 732
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A7S0EE52_9CRYP (Protein transport protein SEC23 (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EE52_9CRYP) HSP 1 Score: 109 bits (273), Expect = 9.440e-22 Identity = 71/246 (28.86%), Postives = 116/246 (47.15%), Query Frame = 1
Query: 211 TVFPRELGWLPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGL-REKLPHTDDESFREFFSDV 945
+ FP +L LP+ LF + GPLLG +L + DD +R +FL+ L++ LR+++P++ S + + +L+ VPVE ++LPDRIL+LD H +VFVWSG V G E+D+VR+ + R+P V+ K+G+S R+L RL PSH+D + G E ++GL ++K D+ES+ ++ + +
Sbjct: 577 STFPAQLQGLPLYLFFAQTGPLLGSILNSEDDANVLRRIFLKSNLEDSLRILSPQLFSCSLND--------------------------------------------------QNVLQFQEVPVEDTSLLPDRILLLDHHTQVFVWSGTQVAGAEYDLVRQTLLSSIKAWTAGRFPCPEVMEFKEGNSMCRWLECRLNPSHRDMASRGVMGSL------TEAVKGLLQKKFVPMDNESYIQWLAKL 766
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A7S4AS76_9STRA (Protein transport protein SEC23 n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AS76_9STRA) HSP 1 Score: 101 bits (252), Expect = 2.210e-21 Identity = 74/225 (32.89%), Postives = 99/225 (44.00%), Query Frame = 1
Query: 289 LQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTD---DESFREFFSDVCNA 954
++++DD R LFLR L+ CL+MM PE+ S A SV+ G + M P ETLA+ D I+ D HD +F+WSGA +D +R+ E E R+P + L DG S +R T+RL PSH DPI+ QI FP L+ + LE LR K D DESFR +F V +A
Sbjct: 1 MRSMDDRAEQRSLFLRFPLENCLKMMRPEVWSTGAM-----------------SVSSGWDM-------------------------------MLPFPPETLALWDDSIVAADFHDALFIWSGANCKAKRYDGIREKFETHLLELSKDRFPMPELHKLSDGDSMARRFTARLAPSHADPIDNQIVSFPALSALKPHALEDLRSKFKFYDSNSDESFRTWFWSVASA 177
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: D8M3U1_BLAHO (Protein transport protein SEC23 n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M3U1_BLAHO) HSP 1 Score: 86.3 bits (212), Expect = 9.130e-16 Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 1
Query: 574 VPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTDDESFREFFSDV 945
+P ETLA++ D I+VLDT +F+W G V+ D + + R+P + + +++GSS +R++ S LIPSHKDPIE P LA +P + L K TDD SFRE+ +
Sbjct: 62 LPPETLALMSDSIVVLDTEREIFIWIGTERSEVDADPLYDHCVSLALSMNQERFPPSIIRVVREGSSSARFVLSNLIPSHKDPIETSFLSLPFLATLPPQYLRQHCNKFLRTDDMSFREYMVKI 185
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A7S4I8Q9_9EUKA (Protein transport protein SEC23 (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I8Q9_9EUKA) HSP 1 Score: 86.3 bits (212), Expect = 5.630e-15 Identity = 58/207 (28.02%), Postives = 92/207 (44.44%), Query Frame = 1
Query: 238 LPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLA 858
+P +F LRRGPLLGP+LQ+ DD R FL+ CLR + P + +++ GDV +P+E LA+ + +L+LD H + +W G V G + D + D+ + R+P +++ K+ SS +R+L RL+PSHKD E Q++ FP+L+
Sbjct: 153 VPRMMFLLRRGPLLGPILQHSDDIDYCRCFFLQAPFKTCLRFIDPPLCRIQS-------------GDVV------------------------------------------PLPLEDLALQSNSVLLLDHHTEILIWQGREV-GEQEDRLLSVANDLAIQRAENRFPRPYIMQFKERSSMARWLLCRLVPSHKDSKEMQLQSFPELS 303
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: L1JV07_GUITC (Protein transport protein SEC23 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JV07_GUITC) HSP 1 Score: 79.0 bits (193), Expect = 7.760e-12 Identity = 48/163 (29.45%), Postives = 77/163 (47.24%), Query Frame = 1
Query: 211 TVFPRELGWLPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAI 699
+ FP +L LP LF + GPLLG +L + DD +R +FL+ L++ LR+++P++ S E + +L+ + +PVE ++LPDRI+ +D H +VFVWSG+ V GVEF+ VR+ +
Sbjct: 571 STFPAQLQGLPKYLFFAQNGPLLGSILNSEDDANVLRRIFLKSNLEDSLRILSPQLFSCTLNE--------------------------------------------------QNVLQFEELPVEDTSLLPDRIVFMDHHTQVFVWSGSQVSGVEFEPVRQTL 683 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22295.5929.1 >prot_H-paniculata_contig22295.5929.1 ID=prot_H-paniculata_contig22295.5929.1|Name=mRNA_H-paniculata_contig22295.5929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=315bp MEAEAVAAGLLQQQQQQQEQEQQHQQAGSPEGKQKDGLGGRGGVGNDNRAback to top mRNA from alignment at H-paniculata_contig22295:449..3832+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22295.5929.1 ID=mRNA_H-paniculata_contig22295.5929.1|Name=mRNA_H-paniculata_contig22295.5929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3384bp|location=Sequence derived from alignment at H-paniculata_contig22295:449..3832+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22295:449..3832+ >mRNA_H-paniculata_contig22295.5929.1 ID=mRNA_H-paniculata_contig22295.5929.1|Name=mRNA_H-paniculata_contig22295.5929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1890bp|location=Sequence derived from alignment at H-paniculata_contig22295:449..3832+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |