mRNA_H-paniculata_contig22295.5929.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22295.5929.1
Unique NamemRNA_H-paniculata_contig22295.5929.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A6H5L550_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L550_9PHAE)

HSP 1 Score: 293 bits (750), Expect = 1.620e-91
Identity = 155/249 (62.25%), Postives = 185/249 (74.30%), Query Frame = 1
Query:  205 ETTVFPRELGWLPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTDDESFREFFSDVCN 951
            E  VFPRELG LP++LFHLRRGPLLGPLLQN DDPLC+RHLFLRGAL+ECLRMM P ++SLKA EAL  L++A   G+ +   +G   ++      R        A AA G+           VPVETLAML DR+LVLDTHDRVFVWSG+AVCG EF+ VR+A    F+ E  +R+P A VVFLKDG+SWSRYLTSRLIPSHKDP+EEQ++GFP+LAGVP  ++E LR KLP TDDES+REFF DVC+
Sbjct:  165 EDAVFPRELGRLPLQLFHLRRGPLLGPLLQNSDDPLCLRHLFLRGALEECLRMMEPSLVSLKAAEALACLTAA---GNGSGGDSGNTAKE------RVPTASTSAAAAAAGLS-----FPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRSFFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCD 399          
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: D8LGM0_ECTSI (Protein transport protein SEC23 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM0_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 5.670e-60
Identity = 117/207 (56.52%), Postives = 141/207 (68.12%), Query Frame = 1
Query:  337 GALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKAL--LKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTDDESFREFFSDVCN 951
            GAL+ECLRMM P ++S KATEAL  L++A                    G+G  G+ G    E         A        VPVETLAML DR+LVLDTHDRVFVWSG+AVCG EF+ VR+A   +F+ E  +R+P A VVFLKDG+SWSRYLTSRLIPSHKDP+EEQ++GFP+LAGVP  ++E LR KLP TDDES+REFF DVC+
Sbjct:  554 GALEECLRMMEPSLVSFKATEALACLTAA--------------------GNGSGGDSGNTAKEGVPTASASAAAPPFPFSRVPVETLAMLADRVLVLDTHDRVFVWSGSAVCGPEFEAVREACRGVFAGEAGSRFPYAPVVFLKDGTSWSRYLTSRLIPSHKDPVEEQLRGFPNLAGVPEAEVEQLRAKLPPTDDESYREFFWDVCD 740          
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A835ZAM5_9STRA (Protein transport protein SEC23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAM5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 4.360e-24
Identity = 109/327 (33.33%), Postives = 141/327 (43.12%), Query Frame = 1
Query:  160 AVVSAVEAAQEEESAETTV-----FPRELGWLPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQ-------QQG-------------------------------DGRAGEGGEEDAEAAR--GIQRKKAL--------------LKMDAVPV--ETLAMLPDRILVLDTHDRVFVWSGAAVCG-VEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTDDESFREFFSDVCNA 954
            A  +A  A+    S   TV     FP +L  L   L+HL RG LLG +  + D+  C RHLFLR   ++C RMM P +    ATEA   L    P     A++AG   Q Q       QQG                               DG    GG     A +  G+    A+              ++M  VPV  ETLAMLP R+LV+DTHD ++VWSGA   G      +R A  D  +     R+P A V  L++G SW R+L  RL PSH D   E  +G  D A      +  L  +LPHTDD + R+F   V   
Sbjct:  611 AARAAAAASARHPSTTNTVQTTQPFPPQLEGLVPLLYHLHRGALLGRMRLSADEVACARHLFLRAPAEDCARMMAPALCV--ATEAPLPLP---PLAGADAALAGAYTQQQELSAGAMQQGWRHSNQGELRDFGGGTGGGSXXXXXGVPSGRDGGLHTGGSLGVVAGKADGVITSSAVHNANVENINDDDDDVRMTLVPVAPETLAMLPHRVLVMDTHDALYVWSGARAAGDARARRLRDAAIDAAAAAAAARFPCAEVTVLREGQSWCRHLLCRLAPSHMDA--EVGRGRSDAA------IAELCVRLPHTDDLTLRQFTYSVVGG 924          
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A6A7GB13_9CRUS (Protein transport protein SEC23 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GB13_9CRUS)

HSP 1 Score: 112 bits (281), Expect = 9.430e-23
Identity = 74/258 (28.68%), Postives = 113/258 (43.80%), Query Frame = 1
Query:  178 EAAQEEESAETTVFPRELGWLPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTDDESFREFFSDVCN 951
            ++ Q  E+ +       L  LP  L+ LR+GP+LGPLLQN DD   +R L+L  +L + +R+M P +LS                                                        +L  ++ +P+  LA+  +RIL LD H  VF+WSG  V G E+D  R A  +        R+P + V   K+ SS  R+L  RLIP+H D + +Q + FP L  +       L EK   T++ S+R++   + N
Sbjct:  579 KSVQISENRKERSLEEHLATLPFMLYLLRQGPILGPLLQNPDDISYLRTLYLHASLQDTVRLMLPTLLSFN------------------------------------------------------SLGNVEELPLSNLALQSNRILCLDHHSHVFIWSGKEVSGSEYDSYRNACRERSLVTSTRRFPQSRVFQFKENSSDERWLRCRLIPAHNDSLAQQNEDFPQLDEMEPYLRSKLLEKFMRTNEPSYRQYLFQIFN 782          
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A2P6N5N0_9EUKA (Protein transport protein SEC23 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N5N0_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 1.590e-22
Identity = 80/267 (29.96%), Postives = 120/267 (44.94%), Query Frame = 1
Query:  157 RAVVSAVEAAQEEESAETTVFPRELGWLPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGV----EFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTDDESFREFFSDV 945
            ++VV  +    +       V P  L  LP RLF L+RGPLLGP+LQ++DD   MR L ++  L + LRM+ P +  + ++                                             RG Q     L++  +P E LAM  D+IL+LD H  VF W G  V  +    + + + K  ++        RYP       K+G+S +R++  RLIPSHKD  EEQ++ FP +  +  ED   L  K   TDD S+ ++F  +
Sbjct:  514 QSVVKILRGCGKVSRRGGYVLPTHLSLLPKRLFMLQRGPLLGPILQHMDDIDYMRCLLIQANLQDSLRMIDPPLFMVDSS--------------------------------------------LRGEQP----LELYPLPTEDLAMQSDKILLLDHHTEVFRWLGGMVGRIHQTADLEGILKRCDEYVESISRHRYPHPSSHSFKEGTSMARWIQCRLIPSHKDTTEEQLENFPQMDELTEEDRRRLLSKFHRTDDLSYLQWFKKL 732          
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A7S0EE52_9CRYP (Protein transport protein SEC23 (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EE52_9CRYP)

HSP 1 Score: 109 bits (273), Expect = 9.440e-22
Identity = 71/246 (28.86%), Postives = 116/246 (47.15%), Query Frame = 1
Query:  211 TVFPRELGWLPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGL-REKLPHTDDESFREFFSDV 945
            + FP +L  LP+ LF  + GPLLG +L + DD   +R +FL+  L++ LR+++P++ S    +                                                  + +L+   VPVE  ++LPDRIL+LD H +VFVWSG  V G E+D+VR+ +          R+P   V+  K+G+S  R+L  RL PSH+D     + G         E ++GL ++K    D+ES+ ++ + +
Sbjct:  577 STFPAQLQGLPLYLFFAQTGPLLGSILNSEDDANVLRRIFLKSNLEDSLRILSPQLFSCSLND--------------------------------------------------QNVLQFQEVPVEDTSLLPDRILLLDHHTQVFVWSGTQVAGAEYDLVRQTLLSSIKAWTAGRFPCPEVMEFKEGNSMCRWLECRLNPSHRDMASRGVMGSL------TEAVKGLLQKKFVPMDNESYIQWLAKL 766          
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A7S4AS76_9STRA (Protein transport protein SEC23 n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AS76_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.210e-21
Identity = 74/225 (32.89%), Postives = 99/225 (44.00%), Query Frame = 1
Query:  289 LQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTD---DESFREFFSDVCNA 954
            ++++DD    R LFLR  L+ CL+MM PE+ S  A                  SV+ G +                                M   P ETLA+  D I+  D HD +F+WSGA      +D +R+  E    E    R+P   +  L DG S +R  T+RL PSH DPI+ QI  FP L+ +    LE LR K    D   DESFR +F  V +A
Sbjct:    1 MRSMDDRAEQRSLFLRFPLENCLKMMRPEVWSTGAM-----------------SVSSGWDM-------------------------------MLPFPPETLALWDDSIVAADFHDALFIWSGANCKAKRYDGIREKFETHLLELSKDRFPMPELHKLSDGDSMARRFTARLAPSHADPIDNQIVSFPALSALKPHALEDLRSKFKFYDSNSDESFRTWFWSVASA 177          
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: D8M3U1_BLAHO (Protein transport protein SEC23 n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M3U1_BLAHO)

HSP 1 Score: 86.3 bits (212), Expect = 9.130e-16
Identity = 46/124 (37.10%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  574 VPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTDDESFREFFSDV 945
            +P ETLA++ D I+VLDT   +F+W G     V+ D +      +       R+P + +  +++GSS +R++ S LIPSHKDPIE      P LA +P + L     K   TDD SFRE+   +
Sbjct:   62 LPPETLALMSDSIVVLDTEREIFIWIGTERSEVDADPLYDHCVSLALSMNQERFPPSIIRVVREGSSSARFVLSNLIPSHKDPIETSFLSLPFLATLPPQYLRQHCNKFLRTDDMSFREYMVKI 185          
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: A0A7S4I8Q9_9EUKA (Protein transport protein SEC23 (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I8Q9_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 5.630e-15
Identity = 58/207 (28.02%), Postives = 92/207 (44.44%), Query Frame = 1
Query:  238 LPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLKDGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLA 858
            +P  +F LRRGPLLGP+LQ+ DD    R  FL+     CLR + P +  +++             GDV                                            +P+E LA+  + +L+LD H  + +W G  V G + D +     D+  +    R+P  +++  K+ SS +R+L  RL+PSHKD  E Q++ FP+L+
Sbjct:  153 VPRMMFLLRRGPLLGPILQHSDDIDYCRCFFLQAPFKTCLRFIDPPLCRIQS-------------GDVV------------------------------------------PLPLEDLALQSNSVLLLDHHTEILIWQGREV-GEQEDRLLSVANDLAIQRAENRFPRPYIMQFKERSSMARWLLCRLVPSHKDSKEMQLQSFPELS 303          
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Match: L1JV07_GUITC (Protein transport protein SEC23 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JV07_GUITC)

HSP 1 Score: 79.0 bits (193), Expect = 7.760e-12
Identity = 48/163 (29.45%), Postives = 77/163 (47.24%), Query Frame = 1
Query:  211 TVFPRELGWLPIRLFHLRRGPLLGPLLQNLDDPLCMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGGLEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRILVLDTHDRVFVWSGAAVCGVEFDVVRKAI 699
            + FP +L  LP  LF  + GPLLG +L + DD   +R +FL+  L++ LR+++P++ S    E                                                  + +L+ + +PVE  ++LPDRI+ +D H +VFVWSG+ V GVEF+ VR+ +
Sbjct:  571 STFPAQLQGLPKYLFFAQNGPLLGSILNSEDDANVLRRIFLKSNLEDSLRILSPQLFSCTLNE--------------------------------------------------QNVLQFEELPVEDTSLLPDRIVFMDHHTQVFVWSGSQVSGVEFEPVRQTL 683          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22295.5929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L550_9PHAE1.620e-9162.25Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
D8LGM0_ECTSI5.670e-6056.52Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
A0A835ZAM5_9STRA4.360e-2433.33Protein transport protein SEC23 n=1 Tax=Tribonema ... [more]
A0A6A7GB13_9CRUS9.430e-2328.68Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A2P6N5N0_9EUKA1.590e-2229.96Protein transport protein SEC23 n=1 Tax=Planoproto... [more]
A0A7S0EE52_9CRYP9.440e-2228.86Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
A0A7S4AS76_9STRA2.210e-2132.89Protein transport protein SEC23 n=1 Tax=Pseudo-nit... [more]
D8M3U1_BLAHO9.130e-1637.10Protein transport protein SEC23 n=1 Tax=Blastocyst... [more]
A0A7S4I8Q9_9EUKA5.630e-1528.02Protein transport protein SEC23 (Fragment) n=1 Tax... [more]
L1JV07_GUITC7.760e-1229.45Protein transport protein SEC23 n=2 Tax=Guillardia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22295contigH-paniculata_contig22295:449..3832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score108.6
Seed ortholog evalue5.3e-21
Seed eggNOG ortholog13333.ERN11132
KEGG koko:K14006
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transport) protein
EggNOG OGs37NTS@33090,3GEAK@35493,COG5047@1,KOG1986@2759
Ec32 ortholog descriptionADF-H/Gelsolin-like domain
Ec32 orthologEc-10_002710.1
COG Functional cat.U
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Exons4
Model size1457
Cds size945
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22295.5929.1prot_H-paniculata_contig22295.5929.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22295 461..3332 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.6379142-UTR-H-paniculata_contig22295:448..4601622929617.6379142-UTR-H-paniculata_contig22295:448..460Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22295 449..460 +
1691480937.4260674-UTR-H-paniculata_contig22295:448..4601691480937.4260674-UTR-H-paniculata_contig22295:448..460Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22295 449..460 +
1622929617.6982222-UTR-H-paniculata_contig22295:3332..38321622929617.6982222-UTR-H-paniculata_contig22295:3332..3832Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22295 3333..3832 +
1691480937.4940658-UTR-H-paniculata_contig22295:3332..38321691480937.4940658-UTR-H-paniculata_contig22295:3332..3832Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22295 3333..3832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.6473866-CDS-H-paniculata_contig22295:460..8381622929617.6473866-CDS-H-paniculata_contig22295:460..838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22295 461..838 +
1691480937.4423249-CDS-H-paniculata_contig22295:460..8381691480937.4423249-CDS-H-paniculata_contig22295:460..838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22295 461..838 +
1622929617.6621108-CDS-H-paniculata_contig22295:1504..17291622929617.6621108-CDS-H-paniculata_contig22295:1504..1729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22295 1505..1729 +
1691480937.4589972-CDS-H-paniculata_contig22295:1504..17291691480937.4589972-CDS-H-paniculata_contig22295:1504..1729Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22295 1505..1729 +
1622929617.6731842-CDS-H-paniculata_contig22295:2276..24231622929617.6731842-CDS-H-paniculata_contig22295:2276..2423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22295 2277..2423 +
1691480937.4708843-CDS-H-paniculata_contig22295:2276..24231691480937.4708843-CDS-H-paniculata_contig22295:2276..2423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22295 2277..2423 +
1622929617.6840494-CDS-H-paniculata_contig22295:3137..33321622929617.6840494-CDS-H-paniculata_contig22295:3137..3332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22295 3138..3332 +
1691480937.4851563-CDS-H-paniculata_contig22295:3137..33321691480937.4851563-CDS-H-paniculata_contig22295:3137..3332Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22295 3138..3332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22295.5929.1

>prot_H-paniculata_contig22295.5929.1 ID=prot_H-paniculata_contig22295.5929.1|Name=mRNA_H-paniculata_contig22295.5929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=315bp
MEAEAVAAGLLQQQQQQQEQEQQHQQAGSPEGKQKDGLGGRGGVGNDNRA
VVSAVEAAQEEESAETTVFPRELGWLPIRLFHLRRGPLLGPLLQNLDDPL
CMRHLFLRGALDECLRMMTPEMLSLKATEALTALSSAAPRGDVAASVAGG
LEQDQQQGDGRAGEGGEEDAEAARGIQRKKALLKMDAVPVETLAMLPDRI
LVLDTHDRVFVWSGAAVCGVEFDVVRKAIEDIFSEELVTRYPSAHVVFLK
DGSSWSRYLTSRLIPSHKDPIEEQIKGFPDLAGVPAEDLEGLREKLPHTD
DESFREFFSDVCNA*
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mRNA from alignment at H-paniculata_contig22295:449..3832+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22295.5929.1 ID=mRNA_H-paniculata_contig22295.5929.1|Name=mRNA_H-paniculata_contig22295.5929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3384bp|location=Sequence derived from alignment at H-paniculata_contig22295:449..3832+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGGCCCGGCTATGGAGGCGGAGGCAGTGGCGGCGGGGTTATTGCAGCA GCAGCAGCAGCAGCAGGAGCAGGAACAGCAGCACCAACAAGCGGGTTCAC CCGAGGGGAAACAAAAAGACGGGCTTGGGGGGAGAGGAGGAGTGGGGAAT GACAATAGAGCGGTTGTGTCGGCGGTAGAGGCGGCGCAGGAGGAGGAAAG CGCCGAGACGACGGTGTTTCCCAGGGAGCTGGGGTGGCTGCCCATCCGGC TGTTCCACCTTCGGAGGGGCCCGTTGCTGGGCCCGCTGTTGCAGAACTTG GACGACCCGCTCTGCATGCGGCATCTGTTTTTGAGAGGGGCACTGGACGA GTGCTTAAGGATGATGACGCCCGAGATGCTCTCCTTGAAGGTGTGGGAGT AGTTGGTTATTGGGTGATGGTGATGATGGTGATGATGATGGGTTATGGTG GATGATGAGTCAGTGGCGGTTCAGGGACACGCCCATGTATATTGCTATGG GCTGAGGGGCGTGCATGGTTTAGGTGTGTATGTAGCAGACACAAAGGGAT ATGAGGGCCTGACCGCGCGTCCTCGAGGGGATGAGGTTGTTGTGCCACAG GGAGAGGAGGCGAGGGAGGGGGGGGGGATTCACAAGTCAACCCATGCACC ACAGTATATAGCTCTACAAAATTTAATGTAATGAGTTGATCGTATACCCC TGTTGAGGTTATGAAGCTGACCTTAAATCTTACTCGCGTATAGTTACCAG TAGAATTAGATTGCTACCAAATACGGGGGTAGCCCGAGTAGGTCGAAGTT GGGTGTGGGTGTGTGGGTGTGTTTGTGTGTGTGCGCGCGAAGTTAGGCAC TCTCACAAGGTAAAAAGACGTGTGCTACAGCCCCCCCCCTCCGTCCGCCT TTGAATGGTACACACCATGACCTTGTTTTTGACACGTTTTCAGGAAAGCG ATGGCAGATTATCTGCCGCTGTCTGTTTGTCTGTCTGACCTTTCTTGACG TACACACACAAACATATTCCTTTCCTCTCTTGCTCCCACTCTCGCGTGTG TCTCAGGCCACGGAGGCGCTGACAGCCTTGTCAAGTGCCGCCCCTCGCGG AGATGTAGCAGCTTCAGTAGCAGGGGGGTTGGAACAAGACCAGCAGCAAG GAGATGGAAGAGCAGGAGAAGGAGGAGAAGAAGATGCCGAGGCAGCGAGA GGGATTCAGAGAAAGAAAGCGCTTCTGAAGATGGATGCCGTGCCTGTCGA GACTCTGGCGATGCTCCCCGACCGCATCCTGGTATGTATGTGTCATACTC TGTGAAATGGGTGGACCTATATATATGGTATAGGTGCACGCCCAAGGTAT GCTTTATATAGGTGGCATACCTTACTCTAATACACGCCCAGGTCTAAGTC CCTCCATTGAGAAAAGAGGCTTTCACCTGAAGCGGTATACCTTACATGGG TATACCTCAAATAGGGCCACCTATTGTACTTGCAACGTGTGTGAACGGAT GTGGTTGGGGAGGGTATATGTTTGCTTGTATGTTATATGTTTGTGAATCC AATTATCAAGTAAAATGTAGAAAAAAAAAAAAGGAGGTACTTCAAAAGTT GCAATAACGCTTGGCTAATATTTTACTCAGTGCTTACAAAAGCAGGTTTA GAAGGTGGAGTTCTTGAGCACAGGATGGAAGACGGTACATGACATAAGTT GGATTTTCCAGTCAAAAGTTGAATCAAACAATAAACCTCGTTTTTTTTTT TTTATCCTTCTGTCGTTTTGCGTTGCTTTGCGGGACCCTCCCCCCCCCCC GCCAACGGAAATGATGACAACAAAAAAGGTTCTCGATACTCACGATCGGG TCTTCGTCTGGAGCGGAGCCGCGGTTTGCGGCGTCGAGTTCGATGTGGTG CGGAAAGCGATCGAGGATATTTTCTCCGAGGAGTTGGTGACTCGCTATCC CTCTGCTCACGTAGTCTTCCTCAAGGTACTAAGAAAAACGAATCCGGATA GAGTATGTTGATAAATACGTTTAGTCCCCTTATTGGTATACGTTTGATGA CGAGTATAGACAAATGAAGTTCGCCCCCCCCGTTGCTTTTGTGTCTCTTT GTGTTGTTGGTTTGTTTTGAAGTCATAGGGTATCTAATGATCGGTAGGTG GCGGGTTGTTGGAAATTGGAGGGATGCTGGGAATTTTGTTTTGCTGCTGT TGTTTTTGCCATCTTTATCCTTTAGGTGTGTGCATTGTTGAAATGTTTCG GTACACGTGCGGCTTGATTTGTTTTATGCATGTATCGGAGCTGTGTTTGT GATTGCTGTCATTATTAAAAAGAAAAAGAAAAAAAGTATTGATAAATCTG AGAAGCAACTGTCGAAGACACAAACTTATTTTTAACAACGTTTATGCTTT TTTTTTCTTTGGTGTGTGTGTGTGTGTGTGTGTGTGTCTACTGTTGTTTT TTGTTTGTTGAGATGGGTGGGATGGATGAGTCAGTCTTTTGTCGTTTTAT CATTTATCATTGGTTATTTTTATATTATAATGAGTTGTTTTTGTTGACGG TGTCAGAGTTCAATCTGTGGGACTTTGGTCTTGTTGAGTGTGTATTTTTG CGTACCACCGAAAGCTTGACAAGAAGCGCGTGATCCTGACGGTGTCGTCT TTCCCCCCCCCCCCCCCTCTTGGTTTTCTTGTAAAACAGGACGGGTCATC CTGGTCGAGGTATCTAACATCCAGGCTAATCCCTTCCCACAAAGACCCCA TCGAGGAACAAATCAAGGGTTTCCCAGATTTGGCAGGCGTACCTGCGGAG GATCTTGAAGGCTTGAGAGAAAAGCTTCCGCACACGGATGACGAGAGTTT CCGAGAGTTTTTCTCGGATGTTTGTAACGCTTAGCTAAATAAGCGAACAG TATATCGTGACAGGTAGTATAATAAATCGAAGTAATTGTGAGTGAATGAG TTGAGCTAATAATGATAAAAAATGACAGTATATAGGGGGGCTAGGTACTG ACTGTAGGTAGATGATCCCTTAAGAGAAGATAGGGGAATAGCTAATGAGA AAGATGTGTGAGGGGGAATGTTCTCTTTTTCTCTTTTTTTTTTTTTCGAG GCGGATAGTATTGCGCGGCGATAGTGTTTTTTCTTGGTGCGCTACGCTCA AACTCAAAACGTTATTTATTTATTTTTTTTCCATGTGCAGGAATCTTGTG GTCTTGTGTTCTTTCCTTTTTTTCTTTTTGGAACTTTGAGATGACTAGAT TTCCTACTGACTGTCCCGTTGCCGATCACACATACCTGTTTTGTTTTGTT CACGTGCACAAGGTGCGAGTGATAATTTAATTGGTTTAATATATACAATA TATGGCCGTGTTCTAAGCGAACATACCGAAATCA
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Coding sequence (CDS) from alignment at H-paniculata_contig22295:449..3832+

>mRNA_H-paniculata_contig22295.5929.1 ID=mRNA_H-paniculata_contig22295.5929.1|Name=mRNA_H-paniculata_contig22295.5929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1890bp|location=Sequence derived from alignment at H-paniculata_contig22295:449..3832+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGCGGAGGCAGTGGCGGCGGGGTTATTGCAGCAGCAGCAGCAGCA
GCAGGAGCAGGAACAGCAGCACCAACAAGCGGGTTCACCCGAGGGGAAAC
AAAAAGACGGGCTTGGGGGGAGAGGAGGAGTGGGGAATGACAATAGAGCG
GTTGTGTCGGCGGTAGAGGCGGCGCAGGAGGAGGAAAGCGCCGAGACGAC
GGTGTTTCCCAGGGAGCTGGGGTGGCTGCCCATCCGGCTGTTCCACCTTC
GGAGGGGCCCGTTGCTGGGCCCGCTGTTGCAGAACTTGGACGACCCGCTC
TGCATGCGGCATCTGTTTTTGAGAGGGGCACTGGACGAGTGCTTAAGGAT
GATGACGCCCGAGATGCTCTCCTTGAAGATGGAGGCGGAGGCAGTGGCGG
CGGGGTTATTGCAGCAGCAGCAGCAGCAGCAGGAGCAGGAACAGCAGCAC
CAACAAGCGGGTTCACCCGAGGGGAAACAAAAAGACGGGCTTGGGGGGAG
AGGAGGAGTGGGGAATGACAATAGAGCGGTTGTGTCGGCGGTAGAGGCGG
CGCAGGAGGAGGAAAGCGCCGAGACGACGGTGTTTCCCAGGGAGCTGGGG
TGGCTGCCCATCCGGCTGTTCCACCTTCGGAGGGGCCCGTTGCTGGGCCC
GCTGTTGCAGAACTTGGACGACCCGCTCTGCATGCGGCATCTGTTTTTGA
GAGGGGCACTGGACGAGTGCTTAAGGATGATGACGCCCGAGATGCTCTCC
TTGAAGGCCACGGAGGCGCTGACAGCCTTGTCAAGTGCCGCCCCTCGCGG
AGATGTAGCAGCTTCAGTAGCAGGGGGGTTGGAACAAGACCAGCAGCAAG
GAGATGGAAGAGCAGGAGAAGGAGGAGAAGAAGATGCCGAGGCAGCGAGA
GGGATTCAGAGAAAGAAAGCGCTTCTGAAGATGGATGCCGTGCCTGTCGA
GACTCTGGCGATGCTCCCCGACCGCATCCTGGCCACGGAGGCGCTGACAG
CCTTGTCAAGTGCCGCCCCTCGCGGAGATGTAGCAGCTTCAGTAGCAGGG
GGGTTGGAACAAGACCAGCAGCAAGGAGATGGAAGAGCAGGAGAAGGAGG
AGAAGAAGATGCCGAGGCAGCGAGAGGGATTCAGAGAAAGAAAGCGCTTC
TGAAGATGGATGCCGTGCCTGTCGAGACTCTGGCGATGCTCCCCGACCGC
ATCCTGGTTCTCGATACTCACGATCGGGTCTTCGTCTGGAGCGGAGCCGC
GGTTTGCGGCGTCGAGTTCGATGTGGTGCGGAAAGCGATCGAGGATATTT
TCTCCGAGGAGTTGGTGACTCGCTATCCCTCTGCTCACGTAGTCTTCCTC
AAGGTTCTCGATACTCACGATCGGGTCTTCGTCTGGAGCGGAGCCGCGGT
TTGCGGCGTCGAGTTCGATGTGGTGCGGAAAGCGATCGAGGATATTTTCT
CCGAGGAGTTGGTGACTCGCTATCCCTCTGCTCACGTAGTCTTCCTCAAG
GACGGGTCATCCTGGTCGAGGTATCTAACATCCAGGCTAATCCCTTCCCA
CAAAGACCCCATCGAGGAACAAATCAAGGGTTTCCCAGATTTGGCAGGCG
TACCTGCGGAGGATCTTGAAGGCTTGAGAGAAAAGCTTCCGCACACGGAT
GACGAGAGTTTCCGAGAGTTTTTCTCGGATGTTTGTAACGCTTAGGACGG
GTCATCCTGGTCGAGGTATCTAACATCCAGGCTAATCCCTTCCCACAAAG
ACCCCATCGAGGAACAAATCAAGGGTTTCCCAGATTTGGCAGGCGTACCT
GCGGAGGATCTTGAAGGCTTGAGAGAAAAGCTTCCGCACACGGATGACGA
GAGTTTCCGAGAGTTTTTCTCGGATGTTTGTAACGCTTAG
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