mRNA_H-paniculata_contig22291.5928.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22291.5928.1
Unique NamemRNA_H-paniculata_contig22291.5928.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22291.5928.1 vs. uniprot
Match: A0A6H5K6W2_9PHAE (Arginyl-tRNA synthetase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6W2_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 5.630e-23
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    4 QCNAAMELARPLSSKPRDIAATLAAGLQARLGGICEPPEIAGPGFINLRLKSDFVADRVKGMVGDDERLGI 216
            QCNAAM LA+PL  KPRD+A++LA  L  RL  ICE PEIAGPGFINLRL+  FVA +VK MVGD ERLG+
Sbjct:  166 QCNAAMALAKPLKCKPRDVASSLAEKLGPRLAAICEAPEIAGPGFINLRLRDGFVAAKVKSMVGDGERLGV 236
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BLAST of mRNA_H-paniculata_contig22291.5928.1 vs. uniprot
Match: D8LIS7_ECTSI (Arginine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIS7_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 6.060e-23
Identity = 49/71 (69.01%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    4 QCNAAMELARPLSSKPRDIAATLAAGLQARLGGICEPPEIAGPGFINLRLKSDFVADRVKGMVGDDERLGI 216
            QCNAAM LA+PL  KPRD+A++LA  L  RL  ICE PEIAGPGFINLRL+  FVA +VK MVGD ERLG+
Sbjct:   66 QCNAAMALAKPLKCKPRDVASSLAEKLGPRLSAICEAPEIAGPGFINLRLRDGFVAAKVKSMVGDGERLGV 136
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BLAST of mRNA_H-paniculata_contig22291.5928.1 vs. uniprot
Match: A0A6V1Q9W7_HETAK (Arginine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q9W7_HETAK)

HSP 1 Score: 87.4 bits (215), Expect = 1.810e-18
Identity = 43/71 (60.56%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    4 QCNAAMELARPLSSKPRDIAATLAAGLQARLGGICEPPEIAGPGFINLRLKSDFVADRVKGMVGDDERLGI 216
            QCNAAM LA+PL SKPRDIA+ L   LQ      CE PEIAGPGFIN +LK ++V  R+KGM  D +RLG+
Sbjct:  114 QCNAAMPLAKPLKSKPRDIASKLVEELQT--SAFCEEPEIAGPGFINFKLKPEYVGQRIKGMAMDPDRLGV 182
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BLAST of mRNA_H-paniculata_contig22291.5928.1 vs. uniprot
Match: A0A7S1HF10_HEMAN (Arginine--tRNA ligase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HF10_HEMAN)

HSP 1 Score: 87.4 bits (215), Expect = 1.810e-18
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    4 QCNAAMELARPLSSKPRDIAATLAAGLQARLGGICEPPEIAGPGFINLRLKSDFVADRVKGMVGDDERLGI 216
            QCNAAM LA+ L +KPRD+A  L   L+  +G   E PEIAGPGF+NLR K D++ DR+  M  DDERLGI
Sbjct:  143 QCNAAMPLAKTLKTKPRDVATKLCDELKTTIGDTFEEPEIAGPGFLNLRFKEDYICDRIAAMAKDDERLGI 213
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BLAST of mRNA_H-paniculata_contig22291.5928.1 vs. uniprot
Match: A0A835ZBM0_9STRA (Arginine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBM0_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 7.600e-17
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    4 QCNAAMELARPLSSKPRDIAATLAAGLQARLGGICEPPEIAGPGFINLRLKSDFVADRVKGMVGDDERLGI 216
            QCNAAM LA+PL++KPRDIA  L   L+  +  +C+PP+IAGPGFINLRLK +++  R+  M+ D+ RL I
Sbjct:   83 QCNAAMALAKPLNAKPRDIAQQLIDALE--VADLCDPPDIAGPGFINLRLKPEYIQSRITAMLEDESRLAI 151
[Close]
BLAST of mRNA_H-paniculata_contig22291.5928.1 vs. uniprot
Match: A0A5Q4EE49_9CYAN (Arginine--tRNA ligase n=1 Tax=Leptolyngbya sp. DLM2.Bin27 TaxID=2480213 RepID=A0A5Q4EE49_9CYAN)

HSP 1 Score: 80.5 bits (197), Expect = 4.920e-16
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    4 QCNAAMELARPLSSKPRDIAATLAAGLQARLGGICEPPEIAGPGFINLRLKSDFVADRVKGMVGDDERLGI 216
            Q N AM LA+PL  KPRDIA  +   L   LG +CEPPEIAGPGFINLRLK++++AD+++ M  D  RLG+
Sbjct:   43 QANLAMSLAKPLKQKPRDIATQIVEHLD--LGDLCEPPEIAGPGFINLRLKTEYLADQLRAMQADP-RLGV 110
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BLAST of mRNA_H-paniculata_contig22291.5928.1 vs. uniprot
Match: A0A7S0ZAV0_9RHOD (Arginine--tRNA ligase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAV0_9RHOD)

HSP 1 Score: 79.0 bits (193), Expect = 1.720e-15
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 1 
Query:    4 QCNAAMELARPLSSKPRDIAATLAAGLQARLGGICEPPEIAGPGFINLRLKSDFVADRVKGMVGDDERLGI 216
            QCNAAM LA+ L  KPRD+AA L   L  +L  +CE PEIAGPGFINL LK D+V+++V   + D  RLGI
Sbjct:  172 QCNAAMGLAKQLKMKPRDVAAQLLEKL--KLDDLCEAPEIAGPGFINLTLKKDYVSEKVLAALADPTRLGI 240
[Close]
BLAST of mRNA_H-paniculata_contig22291.5928.1 vs. uniprot
Match: A0A1P8WMG5_9PLAN (Arginine--tRNA ligase n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WMG5_9PLAN)

HSP 1 Score: 77.8 bits (190), Expect = 4.380e-15
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    4 QCNAAMELARPLSSKPRDIAATLAAGLQARLGGICEPPEIAGPGFINLRLKSDFVADRVKGMVGDDERLGI 216
            Q N AM LA+ L   PRDIAA + A L   +  +CE PE+AGPGFINL+LK D++A+RV+ + GDD RLG+
Sbjct:   41 QANCAMPLAKKLGKAPRDIAAEIVAALD--VADLCETPEVAGPGFINLKLKDDWIAERVRSIAGDD-RLGV 108
[Close]
BLAST of mRNA_H-paniculata_contig22291.5928.1 vs. uniprot
Match: UPI00093233F1 (arginine--tRNA ligase n=1 Tax=Spirulina major TaxID=270636 RepID=UPI00093233F1)

HSP 1 Score: 77.8 bits (190), Expect = 4.390e-15
Identity = 41/71 (57.75%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:    4 QCNAAMELARPLSSKPRDIAATLAAGLQARLGGICEPPEIAGPGFINLRLKSDFVADRVKGMVGDDERLGI 216
            QCNAA+ LA+PL  KPRDIA TL    Q +L  +CEPPEIAGPGFINLR++  F+A ++    GD  RLG+
Sbjct:   43 QCNAALPLAKPLKRKPRDIAQTLLD--QVQLDHLCEPPEIAGPGFINLRIQPQFIAAQLTQRYGDP-RLGV 110
[Close]
BLAST of mRNA_H-paniculata_contig22291.5928.1 vs. uniprot
Match: A0A7S0CCI4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CCI4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.680e-14
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    4 QCNAAMELARPLSSKPRDIAATLAAGLQARLGGICEPPEIAGPGFINLRLKSDFVADRVKGMVGDDE-RLGI 216
            QCNAAM LA+ L  +PR+ AA +  GL+  LG I E PEIAGPGFINLR K  +++D +  M  D E RL I
Sbjct:   61 QCNAAMGLAKSLGKQPRECAAEIIEGLRPILGDIMEEPEIAGPGFINLRFKETYLSDAICRMAKDSENRLAI 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22291.5928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6W2_9PHAE5.630e-2369.01Arginyl-tRNA synthetase n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIS7_ECTSI6.060e-2369.01Arginine--tRNA ligase n=1 Tax=Ectocarpus siliculos... [more]
A0A6V1Q9W7_HETAK1.810e-1860.56Arginine--tRNA ligase n=1 Tax=Heterosigma akashiwo... [more]
A0A7S1HF10_HEMAN1.810e-1857.75Arginine--tRNA ligase n=1 Tax=Hemiselmis anderseni... [more]
A0A835ZBM0_9STRA7.600e-1754.93Arginine--tRNA ligase n=1 Tax=Tribonema minus TaxI... [more]
A0A5Q4EE49_9CYAN4.920e-1657.75Arginine--tRNA ligase n=1 Tax=Leptolyngbya sp. DLM... [more]
A0A7S0ZAV0_9RHOD1.720e-1557.75Arginine--tRNA ligase n=1 Tax=Timspurckia oligopyr... [more]
A0A1P8WMG5_9PLAN4.380e-1554.93Arginine--tRNA ligase n=1 Tax=Fuerstiella marisger... [more]
UPI00093233F14.390e-1557.75arginine--tRNA ligase n=1 Tax=Spirulina major TaxI... [more]
A0A7S0CCI4_9STRA1.680e-1454.17Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22291contigH-paniculata_contig22291:186..401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.9
Seed ortholog evalue9.8e-10
Seed eggNOG ortholog118166.JH976537_gene3898
Preferred nameargS
KEGG rclassRC00055,RC00523
KEGG koko:K01887
KEGG ReactionR03646
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004812,GO:0004814,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006420,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0019538,GO:0019752,GO:0034641,GO:0034645,GO:0034660,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Arginyl tRNA synthetase N terminal domain
EggNOG OGs1G15V@1117,1H7AH@1150,COG0018@1,COG0018@2
EC6.1.1.19
COG Functional cat.J
BiGG ReactioniECABU_c1320.ECABU_c21380,iECNA114_1301.ECNA114_1940,iECSE_1348.ECSE_2111,iECSF_1327.ECSF_1736,iEcolC_1368.EcolC_1756,iJN746.PP_5089,iLF82_1304.LF82_0128,iNRG857_1313.NRG857_09405,iUMNK88_1353.UMNK88_2348,ic_1306.c2291
Best tax levelOscillatoriales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Exons1
Model size216
Cds size198
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.593876-UTR-H-paniculata_contig22291:185..2031622929617.593876-UTR-H-paniculata_contig22291:185..203Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22291 186..203 +
1691480937.4045897-UTR-H-paniculata_contig22291:185..2031691480937.4045897-UTR-H-paniculata_contig22291:185..203Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22291 186..203 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929617.6070876-CDS-H-paniculata_contig22291:203..4011622929617.6070876-CDS-H-paniculata_contig22291:203..401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22291 204..401 +
1691480937.4165466-CDS-H-paniculata_contig22291:203..4011691480937.4165466-CDS-H-paniculata_contig22291:203..401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22291 204..401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22291.5928.1prot_H-paniculata_contig22291.5928.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22291 204..401 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22291.5928.1

>prot_H-paniculata_contig22291.5928.1 ID=prot_H-paniculata_contig22291.5928.1|Name=mRNA_H-paniculata_contig22291.5928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MELARPLSSKPRDIAATLAAGLQARLGGICEPPEIAGPGFINLRLKSDFV
ADRVKGMVGDDERLGI
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mRNA from alignment at H-paniculata_contig22291:186..401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22291.5928.1 ID=mRNA_H-paniculata_contig22291.5928.1|Name=mRNA_H-paniculata_contig22291.5928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig22291:186..401+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTACAGTGCAACGCGGCGATGGAACTAGCCCGGCCGTTGAGTTCCAAGCC
GCGAGACATCGCTGCTACGTTAGCTGCCGGACTCCAGGCGCGCTTGGGGG
GCATTTGTGAACCCCCCGAGATAGCGGGTCCCGGATTTATTAATCTTCGT
CTGAAGAGCGACTTCGTGGCGGATCGGGTCAAGGGCATGGTTGGGGACGA
TGAACGACTCGGGATT
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Coding sequence (CDS) from alignment at H-paniculata_contig22291:186..401+

>mRNA_H-paniculata_contig22291.5928.1 ID=mRNA_H-paniculata_contig22291.5928.1|Name=mRNA_H-paniculata_contig22291.5928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig22291:186..401+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAACTAGCCCGGCCGTTGAGTTCCAAGCCGCGAGACATCGCTGCTAC
GTTAGCTGCCGGACTCCAGGCGCGCTTGGGGGGCATTTGTGAACCCCCCG
AGATAGCGGGTCCCGGATTTATTAATCTTCGTCTGAAGAGCGACTTCGTG
GCGGATCGGGTCAAGGGCATGGTTGGGGACGATGAACGACTCGGGATTAT
GGAACTAGCCCGGCCGTTGAGTTCCAAGCCGCGAGACATCGCTGCTACGT
TAGCTGCCGGACTCCAGGCGCGCTTGGGGGGCATTTGTGAACCCCCCGAG
ATAGCGGGTCCCGGATTTATTAATCTTCGTCTGAAGAGCGACTTCGTGGC
GGATCGGGTCAAGGGCATGGTTGGGGACGATGAACGACTCGGGATT
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