mRNA_H-paniculata_contig22282.5924.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig22282.5924.1 vs. uniprot
Match: A0A6H5KKP9_9PHAE (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKP9_9PHAE) HSP 1 Score: 199 bits (505), Expect = 1.460e-56 Identity = 96/130 (73.85%), Postives = 114/130 (87.69%), Query Frame = 1
Query: 1 LLLINGATGIAVGMATNIPPHNMAEIVDATVGLIRNPSLSDEALFRLVPAPDFPTGGKVVTCCIMGLAGARKLYTTSNGGITIRATTHMEMTEGKGRPKRNTIVITEVPYQVNKSVLLQRIADMVNDKKV 390
LLLINGATGIAVGMATNIPPHN+ E+V AT+ LIRNP L D+ LFRL+PAPDFPTGG+ IMGLAGARKLYTTSNGG+T+RATTH+E+ E KGR +RN +V+TE+PYQVNKS LLQ++A+MVNDKK+
Sbjct: 323 LLLINGATGIAVGMATNIPPHNLGEVVAATIALIRNPELPDDQLFRLLPAPDFPTGGR-----IMGLAGARKLYTTSNGGVTLRATTHIEVIEAKGRSRRNAVVVTELPYQVNKSSLLQKMAEMVNDKKL 447
BLAST of mRNA_H-paniculata_contig22282.5924.1 vs. uniprot
Match: A0A836CKD9_9STRA (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKD9_9STRA) HSP 1 Score: 171 bits (432), Expect = 7.560e-47 Identity = 80/130 (61.54%), Postives = 105/130 (80.77%), Query Frame = 1
Query: 1 LLLINGATGIAVGMATNIPPHNMAEIVDATVGLIRNPSLSDEALFRLVPAPDFPTGGKVVTCCIMGLAGARKLYTTSNGGITIRATTHMEMTEGKGRPKRNTIVITEVPYQVNKSVLLQRIADMVNDKKV 390
+LL+NGATGIAVGMATNIPPHN+ E+ DA V LI++P L + LF++VPAPDFP+GG IMGLAGARK+YTTSNG +T+RATTH+E + RP RN +++TE+PY VNK+ LL++IA +VN+KK+
Sbjct: 145 ILLLNGATGIAVGMATNIPPHNLGELTDACVALIKDPELPEADLFKIVPAPDFPSGGT-----IMGLAGARKMYTTSNGSVTLRATTHIESIAQRTRPPRNAVIVTEMPYMVNKAALLEKIAALVNEKKL 269
BLAST of mRNA_H-paniculata_contig22282.5924.1 vs. uniprot
Match: W7TLA9_9STRA (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLA9_9STRA) HSP 1 Score: 169 bits (428), Expect = 3.770e-46 Identity = 84/131 (64.12%), Postives = 104/131 (79.39%), Query Frame = 1
Query: 1 LLLINGATGIAVGMATNIPPHNMAEIVDATVGLIRNPSLSDEALFRLVPAPDFPTGGKVVTCCIMGLAGARKLYTTSNGGITIRATTHME-MTEGKGRPKRNTIVITEVPYQVNKSVLLQRIADMVNDKKV 390
+LL+NGATGIAVGMATN+PPHN+ E++D T+ LI +PSLSD+ L RL+PAPDFPTGG IMGL G RKLYT +G I +RA THME + G GR RN IV+TE+PYQVNK+ LL++IADMVN+KK+
Sbjct: 290 MLLLNGATGIAVGMATNVPPHNLGEVLDGTLALIEDPSLSDDKLLRLIPAPDFPTGGD-----IMGLEGPRKLYTNGSGSIVMRAKTHMETIPMGGGRQVRNAIVVTELPYQVNKASLLEKIADMVNEKKM 415
BLAST of mRNA_H-paniculata_contig22282.5924.1 vs. uniprot
Match: A0A3G2BBB4_LIMMA (DNA topoisomerase (ATP-hydrolyzing) n=33 Tax=Oscillatoriales TaxID=1150 RepID=A0A3G2BBB4_LIMMA) HSP 1 Score: 150 bits (379), Expect = 2.210e-43 Identity = 70/129 (54.26%), Postives = 94/129 (72.87%), Query Frame = 1
Query: 4 LLINGATGIAVGMATNIPPHNMAEIVDATVGLIRNPSLSDEALFRLVPAPDFPTGGKVVTCCIMGLAGARKLYTTSNGGITIRATTHMEMTEGKGRPKRNTIVITEVPYQVNKSVLLQRIADMVNDKKV 390
LL+NG++GIAVGMATNIPPHN+ E+VD V LI NP ++D L R +P PDFPTG K I+G +G R+ YTT G IT+R +E E +GRP R I+ITE+PYQ NK+ L+++IA+MVN+K++
Sbjct: 79 LLLNGSSGIAVGMATNIPPHNLNELVDGLVALIHNPEITDTELMRYIPGPDFPTGAK-----ILGRSGIREAYTTGRGSITMRGVAQIETIEHRGRPDREAIIITELPYQTNKAALIEKIAEMVNEKRL 202
BLAST of mRNA_H-paniculata_contig22282.5924.1 vs. uniprot
Match: A0A4P7ZVJ5_9SYNE (DNA gyrase subunit A n=10 Tax=Synechococcales TaxID=1890424 RepID=A0A4P7ZVJ5_9SYNE) HSP 1 Score: 159 bits (403), Expect = 8.130e-43 Identity = 72/129 (55.81%), Postives = 97/129 (75.19%), Query Frame = 1
Query: 4 LLINGATGIAVGMATNIPPHNMAEIVDATVGLIRNPSLSDEALFRLVPAPDFPTGGKVVTCCIMGLAGARKLYTTSNGGITIRATTHMEMTEGKGRPKRNTIVITEVPYQVNKSVLLQRIADMVNDKKV 390
LL+NG+TGIAVGMATNIPPHN+ E++D + LI NP L D L RL+P PDFPTGG+ I+G +G R++YTT G +T+R +E E KGRP R+ ++ITE+PYQ NK+ L++RIA++VNDKK+
Sbjct: 187 LLLNGSTGIAVGMATNIPPHNLTELIDGLLALIENPELEDRELMRLIPGPDFPTGGQ-----ILGRSGIREMYTTGRGSVTMRGVASIETIEAKGRPDRDAVIITELPYQTNKAALIERIAELVNDKKL 310
BLAST of mRNA_H-paniculata_contig22282.5924.1 vs. uniprot
Match: A0A0G4ESH9_VITBC (DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ESH9_VITBC) HSP 1 Score: 158 bits (400), Expect = 2.250e-42 Identity = 83/134 (61.94%), Postives = 99/134 (73.88%), Query Frame = 1
Query: 4 LLINGATGIAVGMATNIPPHNMAEIVDATVGLIRNPSLSDEALFRLVPAPDFPTGGKVVTCCIMGLAGARKLYTTSNGGITIRATTHME---MTEGKGRP--KRNTIVITEVPYQVNKSVLLQRIADMVNDKKV 390
LL+NGATGIAVGMATNIPPH + E+VDA + LI+NPSLSDE LF L+PAPDFPTG +V GL G RKLY T NG + +RA TH+E T KG R IV+TE+PY VNKSVLL+R+A MVN+KK+
Sbjct: 184 LLLNGATGIAVGMATNIPPHQLGELVDACIALIKNPSLSDERLFSLIPAPDFPTGALIV-----GLEGVRKLYKTGNGAVVMRARTHVEEIKKTNRKGGQLGSRTAIVVTELPYMVNKSVLLERMATMVNEKKL 312
BLAST of mRNA_H-paniculata_contig22282.5924.1 vs. uniprot
Match: A0A7S4MTJ4_9STRA (DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MTJ4_9STRA) HSP 1 Score: 157 bits (396), Expect = 7.810e-42 Identity = 77/135 (57.04%), Postives = 99/135 (73.33%), Query Frame = 1
Query: 1 LLLINGATGIAVGMATNIPPHNMAEIVDATVGLIR-----NPSLSDEALFRLVPAPDFPTGGKVVTCCIMGLAGARKLYTTSNGGITIRATTHMEMTEGKGRPKRNTIVITEVPYQVNKSVLLQRIADMVNDKKV 390
+LL+NG GIAVGMATN+PPHN+ E++DA V L LSD AL+RLVP PDFPTG + IMG +G++KLY+T NGG+ +RA TH+E KG R+ IV+TE+PYQVNK+ LL+RIADMVN+KK+
Sbjct: 278 VLLLNGCAGIAVGMATNVPPHNLGELMDACVALTHAAEDGQDELSDGALYRLVPGPDFPTGAR-----IMGTSGSKKLYSTGNGGVVVRAVTHVEQIVSKGGKPRSAIVVTELPYQVNKAALLERIADMVNEKKI 407
BLAST of mRNA_H-paniculata_contig22282.5924.1 vs. uniprot
Match: A0A2S6VGE7_9CYAN (DNA gyrase subunit A n=6 Tax=Cyanobacteria TaxID=1117 RepID=A0A2S6VGE7_9CYAN) HSP 1 Score: 156 bits (394), Expect = 1.320e-41 Identity = 72/129 (55.81%), Postives = 97/129 (75.19%), Query Frame = 1
Query: 4 LLINGATGIAVGMATNIPPHNMAEIVDATVGLIRNPSLSDEALFRLVPAPDFPTGGKVVTCCIMGLAGARKLYTTSNGGITIRATTHMEMTEGKGRPKRNTIVITEVPYQVNKSVLLQRIADMVNDKKV 390
LL+NGA+GIAVGMATNIPPHN+ E++D V LIRNP ++D L + +P PDFPTGG+V +G G R+ YTT G IT+R ++E E +GRP+R IVITE+PYQ NK+ L++RIA+MVN+K++
Sbjct: 167 LLLNGASGIAVGMATNIPPHNLGELIDGLVALIRNPEITDNQLMQYIPGPDFPTGGQV-----LGTGGIREAYTTGRGSITMRGVANIETIEQRGRPEREAIVITELPYQTNKAALIERIAEMVNEKRL 290
BLAST of mRNA_H-paniculata_contig22282.5924.1 vs. uniprot
Match: A0A7T1HNF7_9SYNE (DNA gyrase subunit A n=4 Tax=Synechococcaceae TaxID=1890426 RepID=A0A7T1HNF7_9SYNE) HSP 1 Score: 155 bits (393), Expect = 1.830e-41 Identity = 72/129 (55.81%), Postives = 95/129 (73.64%), Query Frame = 1
Query: 4 LLINGATGIAVGMATNIPPHNMAEIVDATVGLIRNPSLSDEALFRLVPAPDFPTGGKVVTCCIMGLAGARKLYTTSNGGITIRATTHMEMTEGKGRPKRNTIVITEVPYQVNKSVLLQRIADMVNDKKV 390
LL+NG+TGIAVGMATNIPPHN+ E++D + LI +P L D L LVP PDFPTGG+ I+G G R++YTT G +T+R +E E KGRP R+ ++ITE+PYQ NK+ L++RIA+MVNDKK+
Sbjct: 178 LLLNGSTGIAVGMATNIPPHNLTELIDGLLALIADPELDDRQLLALVPGPDFPTGGQ-----ILGRRGIREMYTTGRGSVTMRGVAMIETVEAKGRPDRDAVIITELPYQTNKAALIERIAEMVNDKKL 301
BLAST of mRNA_H-paniculata_contig22282.5924.1 vs. uniprot
Match: A0A0K1RXJ8_9CHRO (DNA gyrase subunit A n=80 Tax=Chroococcales TaxID=1118 RepID=A0A0K1RXJ8_9CHRO) HSP 1 Score: 155 bits (393), Expect = 1.890e-41 Identity = 74/129 (57.36%), Postives = 96/129 (74.42%), Query Frame = 1
Query: 4 LLINGATGIAVGMATNIPPHNMAEIVDATVGLIRNPSLSDEALFRLVPAPDFPTGGKVVTCCIMGLAGARKLYTTSNGGITIRATTHMEMTEGKGRPKRNTIVITEVPYQVNKSVLLQRIADMVNDKKV 390
LLING++GIAVGMATNIPPHN+AEI+D TV LI NP L+D L R +P PDFPTGG I+G G ++ YTT G IT+R +E E +GRP R+ I+ITE+PYQ NK+ L+++IAD+VND+K+
Sbjct: 167 LLINGSSGIAVGMATNIPPHNLAEIIDGTVALIHNPDLTDTELQRYIPGPDFPTGGH-----ILGRDGIQEAYTTGRGSITLRGVATIETIEQRGRPDRDAIIITELPYQTNKAALIEKIADLVNDRKI 290 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22282.5924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22282.5924.1 >prot_H-paniculata_contig22282.5924.1 ID=prot_H-paniculata_contig22282.5924.1|Name=mRNA_H-paniculata_contig22282.5924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp LLLINGATGIAVGMATNIPPHNMAEIVDATVGLIRNPSLSDEALFRLVPAback to top mRNA from alignment at H-paniculata_contig22282:2560..3697- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22282.5924.1 ID=mRNA_H-paniculata_contig22282.5924.1|Name=mRNA_H-paniculata_contig22282.5924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1138bp|location=Sequence derived from alignment at H-paniculata_contig22282:2560..3697- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22282:2560..3697- >mRNA_H-paniculata_contig22282.5924.1 ID=mRNA_H-paniculata_contig22282.5924.1|Name=mRNA_H-paniculata_contig22282.5924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig22282:2560..3697- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |