mRNA_H-paniculata_contig22278.5922.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22278.5922.1
Unique NamemRNA_H-paniculata_contig22278.5922.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22278.5922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22278contigH-paniculata_contig22278:3119..3966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size225
Cds size129
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22278.5922.1prot_H-paniculata_contig22278.5922.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22278 3835..3963 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929616.9048896-UTR-H-paniculata_contig22278:3118..31781622929616.9048896-UTR-H-paniculata_contig22278:3118..3178Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22278 3119..3178 +
1691480937.1591718-UTR-H-paniculata_contig22278:3118..31781691480937.1591718-UTR-H-paniculata_contig22278:3118..3178Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22278 3119..3178 +
1622929616.9161255-UTR-H-paniculata_contig22278:3801..38341622929616.9161255-UTR-H-paniculata_contig22278:3801..3834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22278 3802..3834 +
1691480937.1707404-UTR-H-paniculata_contig22278:3801..38341691480937.1707404-UTR-H-paniculata_contig22278:3801..3834Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22278 3802..3834 +
1622929616.9460142-UTR-H-paniculata_contig22278:3963..39661622929616.9460142-UTR-H-paniculata_contig22278:3963..3966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22278 3964..3966 +
1691480937.1862893-UTR-H-paniculata_contig22278:3963..39661691480937.1862893-UTR-H-paniculata_contig22278:3963..3966Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22278 3964..3966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929616.928979-CDS-H-paniculata_contig22278:3834..39631622929616.928979-CDS-H-paniculata_contig22278:3834..3963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22278 3835..3963 +
1691480937.1784503-CDS-H-paniculata_contig22278:3834..39631691480937.1784503-CDS-H-paniculata_contig22278:3834..3963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22278 3835..3963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22278.5922.1

>prot_H-paniculata_contig22278.5922.1 ID=prot_H-paniculata_contig22278.5922.1|Name=mRNA_H-paniculata_contig22278.5922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=43bp
MTTSGEGRPVAKRHDARAVLSKPQAAEPRAFISTKHEEGKQV*
back to top

mRNA from alignment at H-paniculata_contig22278:3119..3966+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22278.5922.1 ID=mRNA_H-paniculata_contig22278.5922.1|Name=mRNA_H-paniculata_contig22278.5922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=848bp|location=Sequence derived from alignment at H-paniculata_contig22278:3119..3966+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCCGGCTGTCAAGGAGACAGCGAGAGTAATGCGGGTCGGCACGAAGAA
GGTGTATCAGGTACACATTTTTGTACTGTAGAGACAATACAGTACAGTTG
TTTGAATACACTCTTTCGGAACATTTTTACATACTTTATCCCAGTGTTTT
GGTACTGTAGGCACATCACTGTACTGTACTGTACTGTACTGTATTGTACT
GTACTGTACTGTACTTACAAGCAGTACGATACCGCCTCTCCTTGCGTATG
TTATAAATCACCACGTTACTGTCTGAAGCCTGTTTTTACTGATAATTTCA
AAATGACAAATCATGCATCCACGGTAAGCTGTCTTTATCTCTGCCTTCTG
AACCGTCTCACCACGTCTGCTATGCAAAGTGTTGGCTCACTTTCACTCTT
TGTAGATGGAGAGTACTGCCTGTTGGTGCTGACCCTATCACGAAATGCCG
ACCCGTTTGGATCCTTGAAACTGCGCGCCCGCTGCACCTGGATTGTGCTG
AAGTCTTCGCACCGTCTTCGAGTGAGAGTGCTCGTTCCATGTACCGTCCA
TTTCTCCAAAGTGCTGACGCTTGTGTACAGCAACGTGTTTGCAACCACTT
CTCAAATACCATAAATGGCCGCGACGTCAACTTTGATTATGATATTCACG
ACTATATTTTCGTAACATTCACGCGGTGAACAGGTCCGTACTCGTTGAGA
GGATCAGAAGTTGCTCATGACGACATCAGGCGAAGGACGACCTGTGGCGA
AAAGACACGACGCGCGGGCGGTCCTCTCTAAGCCGCAAGCAGCCGAGCCT
CGCGCCTTCATCAGCACTAAACATGAGGAGGGGAAACAAGTTTAAACA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig22278:3119..3966+

>mRNA_H-paniculata_contig22278.5922.1 ID=mRNA_H-paniculata_contig22278.5922.1|Name=mRNA_H-paniculata_contig22278.5922.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=258bp|location=Sequence derived from alignment at H-paniculata_contig22278:3119..3966+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGACATCAGGCGAAGGACGACCTGTGGCGAAAAGACACGACGCGCG
GGCGGTCCTCTCTAAGCCGCAAGCAGCCGAGCCTCGCGCCTTCATCAGCA
CTAAACATGAGGAGGGGAAACAAGTTTAAATGACGACATCAGGCGAAGGA
CGACCTGTGGCGAAAAGACACGACGCGCGGGCGGTCCTCTCTAAGCCGCA
AGCAGCCGAGCCTCGCGCCTTCATCAGCACTAAACATGAGGAGGGGAAAC
AAGTTTAA
back to top