mRNA_H-paniculata_contig22263.5919.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22263.5919.1
Unique NamemRNA_H-paniculata_contig22263.5919.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22263.5919.1 vs. uniprot
Match: D7G0Q9_ECTSI (MORN motif n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q9_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.250e-12
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 VANNPGSCEEWYLGDEQDGMRHGVGAAFYTSGDV 102
            VANNPGSCEEWYLGDE+DG+RHG GAAFYTSGDV
Sbjct:   27 VANNPGSCEEWYLGDERDGVRHGHGAAFYTSGDV 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22263.5919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0Q9_ECTSI1.250e-1291.18MORN motif n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22263contigH-paniculata_contig22263:1108..3916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog2880.D7G0Q9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
Ec32 ortholog descriptionMORN motif containing protein
Ec32 orthologEc-20_001350.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size405
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22263.5919.1prot_H-paniculata_contig22263.5919.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22263 1108..3916 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929616.7175674-CDS-H-paniculata_contig22263:1107..12211622929616.7175674-CDS-H-paniculata_contig22263:1107..1221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22263 1108..1221 +
1691480937.0466692-CDS-H-paniculata_contig22263:1107..12211691480937.0466692-CDS-H-paniculata_contig22263:1107..1221Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22263 1108..1221 +
1622929616.730331-CDS-H-paniculata_contig22263:2711..28361622929616.730331-CDS-H-paniculata_contig22263:2711..2836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22263 2712..2836 +
1691480937.0624728-CDS-H-paniculata_contig22263:2711..28361691480937.0624728-CDS-H-paniculata_contig22263:2711..2836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22263 2712..2836 +
1622929616.7455986-CDS-H-paniculata_contig22263:3750..39161622929616.7455986-CDS-H-paniculata_contig22263:3750..3916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22263 3751..3916 +
1691480937.075237-CDS-H-paniculata_contig22263:3750..39161691480937.075237-CDS-H-paniculata_contig22263:3750..3916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22263 3751..3916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22263.5919.1

>prot_H-paniculata_contig22263.5919.1 ID=prot_H-paniculata_contig22263.5919.1|Name=mRNA_H-paniculata_contig22263.5919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
VANNPGSCEEWYLGDEQDGMRHGVGAAFYTSGDVYHGQWHKGVWQGRGTL
TYMSGAKYSGNFEKGEKHGTGEFLDEDGVSYRGEFRRGRRHGAGYMVSPN
GAQFEGWFRDGVPNGDGILTWPDGGKFIGKYVAGK
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mRNA from alignment at H-paniculata_contig22263:1108..3916+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22263.5919.1 ID=mRNA_H-paniculata_contig22263.5919.1|Name=mRNA_H-paniculata_contig22263.5919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2809bp|location=Sequence derived from alignment at H-paniculata_contig22263:1108..3916+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCGAACAATCCCGGTTCTTGTGAAGAGTGGTATCTCGGTGACGAGCA
GGATGGAATGCGACACGGAGTAGGTGCGGCCTTCTATACATCTGGTGACG
TGTATCACGGACAGGTGAGCTATAGCCGTATCATTATTTGTTATTACTAT
TGTATGCCGTAAAACGTGGACGTACAGTAGCTTTCGATATCATCAAGTTG
CGACCGCTTTTCGAACGCGTTGATTATGTCGAGAACTGCGGCGTTTATGT
TTCCGACAGTGAATATGATGGTATGCCATCGGAAACATCTTGCGTAGGAG
ATCTAGCTGTCAATTGGCAGTTTGTTTTCGACTGCGTGAGGTCTCCGTTC
CCGAGATTGTCACTTGCGTTTGAAAAATGTTCATACTCCGGTGCGATACC
TGCGGGTTTGTTCTACGGTATATCCGTATATTACTTGGTGTACGATGAAG
TTGTTGTCGCCGTGGATTCGGAACATATAGCTTAGTTCTGTAGTCAAGTA
ACTTCTGGAGAAAGGATCTTAGTGCGATCGCAGCGAGCCCGTGTGCGTGA
ATGGAGGACAAAGCAATGGAGTATGACTGCACGGGCGTGTACGCCCATGC
GGGTCTACTAGTAGTCAATCTTCACATGTCTTCCTGTGTTCTGGTCCTCT
TTTGCAAGAGGCTTTTGTGGATAACCAACCGGCTTCGACCCGACTGCCCG
TGGAGAAGCCTCCACATTATGGACAATCTTCAGTCTTTTTTGGGTGTGTG
TGGACAGCAGTCCAACCGATGACGCCATTGTGAAAAGAAGATTTCGTCTT
CCGGGAGCATGTTGTGTGTCGCCGTCGATTTGCAATATAAAATTGACACC
TTGATCCGAGCTGTAGAAAAATTAAAATTATTCGCCGGAAGGTTCAGCAT
GAGCACCTTCATTCTACGCGCCCCCAATCGACCATCTGTAACGAGGCTTG
TTTTTACCATCGTTGACTTAATTTTTAGTCGTAGGAACCGCTCACGGGCA
GATCTGCGAGCACCACAACTTACACCTAGTTAGCCCTTCGAGGGTTAAAT
CGGGCCCTGGTAGCTTCTAAAATTGCTCAAACGCTGCGCTGCTGTGCGGC
GTGGCGACAATTCTGGAGCCAGGCTGGAGGGGTCGGTTAGTACACCGCAG
TAAAACCTTGTACTGCGACAGTCATGGACTTTGCCACAGACGGTGGTAAA
GACTTCTGTCTGCAATTACTCGGAATAGAACAGGGTCAACACTTCCTCGT
TTGAGATAATACATGTATGTCAATATTCAAGTCTGTGCGGGGAGGTGATT
TTTTTTTTCTTTTCAAGTGCCCGCAGTTTCTGAACATTCAGACATGTATA
TATATATATATATATGTATATATTTTGTCATTTTTTCCCAGCGAATGCTT
GAGTATTCGTAAATCTTTTTCAATCATGGACACAAAAAAACTCCCTTGCA
TGCCCCCCCGGCTTTAGTGGTGTACCAGCAGTCAGGGTTTATATTAACGA
CTATACATCGAGCAGCCTTTCGTCTTGTCTCTTTTTCTTAATTATTTTTT
TTCATCGTGTGTGTATGTTTTTGTTTTATTACAAATGATAATGGATAATG
ACAGTGGCACAAGGGCGTCTGGCAAGGACGAGGTACGCTGACTTATATGT
CGGGGGCGAAATATTCCGGCAACTTCGAGAAAGGAGAGAAGCACGGCACG
GGGGAGTTTCTAGATGAGGATGGCGTTAGGTACCGACTACTGCTGACTTT
TTTGTACCTTTTTTTCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
CACCTGGCACAGTTGGTACCATGTTATCTTTATGCAGCTGACTTCAAACT
TGAGTCGTGTGCGCTTATCAAGCAGAATTCGATCAAGAAGGGGTGACGAC
TATTTAGATCGTCAGCAAAAGTAGGAATACTAAGGGATGTATTAGAGCTA
TTTTTGGGCTGTTGAAATTTCGTCAAATGTGCTGTTATCAAGAGATAATT
TTTTGCTATCCGGGTGTGTACAAGGGAGGCCATCGACTCCTCACTGCCTC
AGGGGTCAACGCCTTTAATAGCAAGCAAGAAATTTTTGGGTGGAAACAGT
GAATCGAGGAAGTTTGGAATTTTGGATGGGTGGAAGGTTTAAAACAGCCG
AATTTCAAATTCTGAAATTCAAAAATGGGGTCGAACCGAAATCTGCGCCA
TATGAAAAAAATCGACGCTTACGAAATTTGAAATCCGGGATATAAATATA
TATATTTTTTTATAATGTCCCACTCCAAATTCTTAGATTCTCAATTTTTT
TAATTTCTAATTTCTGCTCCAGAAATACGCTCTCTAGCAGTGGGTGACCC
TTGGAAGATTTTGCTCCTGGAGTCCTGTCTCACCTAACTTCGGCTCGGCT
ATTGTTAGTGAATGGCCCTTAACCGGAAGTAGTTTGGGTGAAGAAGTCCC
ACTGACGACGCTGTCGTGAAAGGAGGGCTGTGCTATCTACATATATTTGT
AGGATGTGTACCTTTTGTATAGGATACTGTCTTCGTGTCTTGTCTGTATG
TGTGTCTCTTCACATAGTCGCCTTTTTCACTCTTACTTATTTTTGTTGTT
TCCGTCAAGGTTTGTCTGACCGTTTTTTTACAAATTTTTGCAGTTATCGA
GGAGAATTTAGAAGGGGTCGTCGACATGGAGCTGGCTACATGGTCAGTCC
AAACGGCGCGCAATTCGAAGGCTGGTTTCGGGACGGTGTACCGAATGGTG
ATGGCATCTTGACCTGGCCAGACGGCGGAAAATTCATCGGAAAATATGTG
GCCGGAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig22263:1108..3916+

>mRNA_H-paniculata_contig22263.5919.1 ID=mRNA_H-paniculata_contig22263.5919.1|Name=mRNA_H-paniculata_contig22263.5919.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig22263:1108..3916+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGCGAACAATCCCGGTTCTTGTGAAGAGTGGTATCTCGGTGACGAGCA
GGATGGAATGCGACACGGAGTAGGTGCGGCCTTCTATACATCTGGTGACG
TGTATCACGGACAGGTGGCGAACAATCCCGGTTCTTGTGAAGAGTGGTAT
CTCGGTGACGAGCAGGATGGAATGCGACACGGAGTAGGTGCGGCCTTCTA
TACATCTGGTGACGTGTATCACGGACAGTGGCACAAGGGCGTCTGGCAAG
GACGAGGTACGCTGACTTATATGTCGGGGGCGAAATATTCCGGCAACTTC
GAGAAAGGAGAGAAGCACGGCACGGGGGAGTTTCTAGATGAGGATGGCGT
TAGTGGCACAAGGGCGTCTGGCAAGGACGAGGTACGCTGACTTATATGTC
GGGGGCGAAATATTCCGGCAACTTCGAGAAAGGAGAGAAGCACGGCACGG
GGGAGTTTCTAGATGAGGATGGCGTTAGTTATCGAGGAGAATTTAGAAGG
GGTCGTCGACATGGAGCTGGCTACATGGTCAGTCCAAACGGCGCGCAATT
CGAAGGCTGGTTTCGGGACGGTGTACCGAATGGTGATGGCATCTTGACCT
GGCCAGACGGCGGAAAATTCATCGGAAAATATGTGGCCGGAAAGTTATCG
AGGAGAATTTAGAAGGGGTCGTCGACATGGAGCTGGCTACATGGTCAGTC
CAAACGGCGCGCAATTCGAAGGCTGGTTTCGGGACGGTGTACCGAATGGT
GATGGCATCTTGACCTGGCCAGACGGCGGAAAATTCATCGGAAAATATGT
GGCCGGAAAG
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