mRNA_H-paniculata_contig2225.5912.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2225.5912.1
Unique NamemRNA_H-paniculata_contig2225.5912.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2225.5912.1 vs. uniprot
Match: A0A6H5L8G8_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8G8_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 1.050e-79
Identity = 131/222 (59.01%), Postives = 160/222 (72.07%), Query Frame = 2 
Query:  143 DTMPTGWDLDRHKVHARARRKMYLWFLAAGCMLV---WAGLAHHKKPA------CPKKFAGDSKVFSGSCWCGWDNYCMCTPSLAIDTVVEVVGSQTGKVESILVIRRKDNGKLACIGGFVEVGEKLEDTVRREVMEETGLAVTDIRMIPTVYDDPARDVRRHTVSIAFVVRATGKPRPGSEEEAIVKIPLDEVRHHLEEFAFDHSQILIDYLK-SDSSAST 778
            +TMP  WD DR +V ARA+RKM  W + + CM++   +  +  H+K        CP+++ G SK  +GSCWCGWD YCMCTPSLAIDTVVEV    TG+V S+LV+RRKDNGKLACIGGFVEVGE LE+  RREV EETGL VT ++M+P +YDDPARD RRHTVS+A+V R TG PR GS+  A+V IPL  +   + EFAFDH QI+ DYL    SSAST
Sbjct:    3 NTMPAEWDGDRQRVRARAQRKMGQWAILSMCMVILFLYLKVVTHRKALQSVTHDCPRQWHGASKTHAGSCWCGWDEYCMCTPSLAIDTVVEVSDPATGEVGSVLVVRRKDNGKLACIGGFVEVGETLEEATRREVREETGLEVTSLQMLPRMYDDPARDARRHTVSVAYVARTTGTPRAGSDAAAVVSIPLASLGETVGEFAFDHGQIMTDYLALGASSAST 224
[Close]
BLAST of mRNA_H-paniculata_contig2225.5912.1 vs. uniprot
Match: D7FNI6_ECTSI (MutT-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI6_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 7.030e-54
Identity = 94/143 (65.73%), Postives = 111/143 (77.62%), Query Frame = 2 
Query:  350 MCTPSLAIDTVVEVVGSQTGKVESILVIRRKDNGKLACIGGFVEVGEKLEDTVRREVMEETGLAVTDIRMIPTVYDDPARDVRRHTVSIAFVVRATGKPRPGSEEEAIVKIPLDEVRHHLEEFAFDHSQILIDYLKSDSSAST 778
            MCTPSLAIDTVVEV    TG+V S+LV+RRKDNGKLACIGGFVEVGE LE+  RREV EETGL VT ++M+P +YDDPARD RRHTVS+A+V R TG PR GS+  A+V IPL  +   + EFAFDH QI+ DYL   + AS+
Sbjct:    1 MCTPSLAIDTVVEVSDPATGEVGSVLVVRRKDNGKLACIGGFVEVGETLEEATRREVREETGLEVTSLQMLPQMYDDPARDARRHTVSVAYVARTTGTPRAGSDAAAVVSIPLASLGETVGEFAFDHGQIMTDYLALGARASS 143
[Close]
BLAST of mRNA_H-paniculata_contig2225.5912.1 vs. uniprot
Match: A0A835YUT6_9STRA (NUDIX hydrolase domain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUT6_9STRA)

HSP 1 Score: 182 bits (463), Expect = 9.830e-50
Identity = 88/174 (50.57%), Postives = 119/174 (68.39%), Query Frame = 2 
Query:  257 AHHKKPACPKKFAGDSKVFSGSCWCGWDNYCMCTPSLAIDTVVEVVGSQTGKVESILVIRRKDNGKLACIGGFVEVGEKLEDTVRREVMEETGLAVTDIRMIPTVYDDPARDVRRHTVSIAFVVRATGKPRPGSEEEAIVKIPLDEVRHHL-------EEFAFDHSQILIDYLK 757
            A  + PACP  FAG S  F GSCWCG D+YCMCTPSLAIDT+VE+V + +G ++ ++V+RRKD GK A +GGFV+VGE +E+ V REV EETGLAV D+R++P +Y DP+RDVRRHTVS+ +  R  G P  G +  ++  + L+  +          +   FDHS IL+DY +
Sbjct:   72 ALQQPPACPHWFAGGSPRFKGSCWCGKDDYCMCTPSLAIDTIVEMVDA-SGVIKGLVVVRRKDVGKYALVGGFVDVGETVEEAVHREVKEETGLAVWDLRLLPRIYSDPSRDVRRHTVSVVYAARTQGSPSAGDDAASVEILSLEAAKALALKGSAAPDGLHFDHSSILLDYFE 244
[Close]
BLAST of mRNA_H-paniculata_contig2225.5912.1 vs. uniprot
Match: A0A7S2CUW8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUW8_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.450e-36
Identity = 78/176 (44.32%), Postives = 100/176 (56.82%), Query Frame = 2 
Query:  230 GCMLVWAGLAHHKKPACPKKFAGDSKVFSGSCWCGWDNYCMCTPSLAIDTVVEVVGSQTGKVESILVIRRKDNGKLACIGGFVEVGEKLEDTVRREVMEETGLAVTDIRMIPTVYDDPARDVRRHTVSIAFVVRATGKPRPGSEEEAIVKIPLDEVRHHLEEFAFDHSQILIDYLK 757
            GC  VW G A    P              GSCWCG DNYCMCTPSLAID V+E   +      +++++ R DNG  A +GGFV+VGE +E  V RE+MEETGL +     +  V+ DP RD RRHTVS  FV    GK R G +   +  +PLD++      +AFDH  I+ DYL+
Sbjct:   30 GCPYVWNGGAPSDAPV-------------GSCWCGQDNYCMCTPSLAIDLVIE--STLPNGEPAVVLVERADNGLFATMGGFVDVGETVETAVARELMEETGLELASPPSLLGVWSDPRRDKRRHTVSAVFVAPGKGKIRAGDDARGVKALPLDQLMGL--HYAFDHDSIISDYLE 188
[Close]
BLAST of mRNA_H-paniculata_contig2225.5912.1 vs. uniprot
Match: A0A8J2S8F7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S8F7_9STRA)

HSP 1 Score: 144 bits (363), Expect = 4.550e-36
Identity = 83/187 (44.39%), Postives = 118/187 (63.10%), Query Frame = 2 
Query:  200 RKMYLWFLAAGCMLVWAGLAHHKKPACPKKFAGDSKVFS--GSCWCGWDNYCMCTPSLAIDTVVEVVGSQTGKVESILVIRRKDNGKLACIGGFVEVGEKLEDTVRREVMEETGLAVTDIRMIPTVYDDPARDVRRHTVSIAFVVRATGKPRPGSEEEAIVKIPLDEVRHHLEEFAFDHSQILIDYL 754
            R++  W +A+  +L+ A  A   +P CP  + G +      GSCW G D Y MCTPSLAID V+E     +G  ++++++RR DNGK A +GGFV+VGE   D V RE+ EET L +    ++  V+ DP RD RRHTVS  +V R  GKP PGS+  A+VK+P+ ++R    ++AFDH+ I+ DYL
Sbjct:   12 REVAGWIVAS--VLLIALFAQRTQP-CPYVWHGGAPSGEPRGSCWVGNDGYAMCTPSLAIDLVIE-----SGD-DAVVLVRRGDNGKYATMGGFVDVGEDPRDAVARELREETALELAAPPLLLGVFGDPRRDPRRHTVSAVYVARTVGKPHPGSDARAVVKVPVAKLRGL--DYAFDHAAIIEDYL 187
[Close]
BLAST of mRNA_H-paniculata_contig2225.5912.1 vs. uniprot
Match: F0Y7B7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7B7_AURAN)

HSP 1 Score: 143 bits (361), Expect = 3.020e-32
Identity = 81/188 (43.09%), Postives = 115/188 (61.17%), Query Frame = 2 
Query:  200 RKMYLWFLAAGCMLVWAGLAHHKKPACPKKFAGDSKVF--SGSCWCGWDNYCMCTPSLAIDTVVEVVGSQTGKVESILVIRRKDNGKLACIGGFVEVGEKLEDTVRREVMEETGLAVTDIRMIPTVYDDPARDVRRHTVSIAFVVRATGKPRPGSEEEAIVKIPLDEVRHHLEEFAFDHSQILIDYLK 757
            R+   W LAA  +L+W      ++PACP  + G +     +GSCW G D Y MCTPSLAID V+E     +G  + ++++RR DNGK A +GGFV+VGE   D V RE+ EET L +     +  V+ DP RD RRHTVS  +V R  G+P+ GS+  A+V +P+ ++     +FAFDH  I+ DY++
Sbjct:    8 REAVAWGLAAFLLLLWL-----RQPACPYVWHGGAPGGEPAGSCWAGPDGYAMCTPSLAIDLVIE-----SGD-DGVVLVRRGDNGKYATMGGFVDVGELPRDAVARELREETNLELVGEPELLGVFGDPRRDERRHTVSAVYVARTAGEPKVGSDARAVVVVPVGDLDGL--DFAFDHRAIIGDYVQ 182
[Close]
BLAST of mRNA_H-paniculata_contig2225.5912.1 vs. uniprot
Match: A0A1Z5JSC3_FISSO (Nudix hydrolase domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSC3_FISSO)

HSP 1 Score: 130 bits (328), Expect = 7.110e-31
Identity = 69/156 (44.23%), Postives = 97/156 (62.18%), Query Frame = 2 
Query:  302 SKVFSGSCWCG-WDNYCMCTPSLAIDTVVEVVGSQTGKVESILVIRRKDNGKLACIGGFVEVGEKLEDTVRREVMEETGLAVTDIR-MIPTVYDDPARDVRRHTVSIAFVVRATGKPRPGSEEEA--IVKIPLDEVRHHLEEFAFDHSQILIDYLK 757
            S   +GSCWCG  D YC+CTPSLAID VV      TG+ + + ++RRKD  +LA +GGFV++GE +E+ V RE+ EETG+     R  +  +Y DP RD RRHTVS+ + +   G   P + ++   ++KIP  EV +H   +  DH  IL+DY K
Sbjct:   65 SDAHAGSCWCGDTDGYCLCTPSLAIDLVV-----MTGR-DHVWLVRRKDTSQLATVGGFVQMGESVEEAVLRELAEETGIKTIPSRPRLIGIYSDPRRDNRRHTVSVTYAIHLDGTEHPEAADDVKEVIKIPFSEVENHT--YFADHKTILLDYRK 212
[Close]
BLAST of mRNA_H-paniculata_contig2225.5912.1 vs. uniprot
Match: A0A7S2A6G3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6G3_TRICV)

HSP 1 Score: 120 bits (300), Expect = 8.290e-28
Identity = 69/151 (45.70%), Postives = 88/151 (58.28%), Query Frame = 2 
Query:  323 CWCGWDNYCMCTPSLAIDTVVEVVGSQTGKVESILVIRRKDNGKLACIGGFVEVGEKLEDTVRREVMEETGLAVTDIRMIPT---VYDDPARDVRRHTVSIAFVVRATGK--PRPGSEEEAIVKIPLDEVRHHLEEFAFDHSQILIDYLKS 760
            CWC  D +CMCTPS+AID V+     ++G  E + ++RR D GKLA +GG +EVGE  ED V RE+ EE  L +      P    VY+DP RD RRHT SI +VV       PR G +  A++++ LDE     E F  DH  IL DY KS
Sbjct:    1 CWCSADQWCMCTPSMAIDVVL-----RSGP-EHVWLVRRADAGKLALMGGMIEVGETAEDAVLRELQEEMNLVLPPAAGRPRLFGVYNDPLRDARRHTASIVYVVDIPMDVTPRAGDDAVAVIRMRLDEALGGEEGFFVDHRTILADYRKS 145
[Close]
BLAST of mRNA_H-paniculata_contig2225.5912.1 vs. uniprot
Match: A0A7S4B2J2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2J2_CHRCT)

HSP 1 Score: 120 bits (302), Expect = 1.560e-27
Identity = 68/186 (36.56%), Postives = 107/186 (57.53%), Query Frame = 2 
Query:  272 PACPKKFAGDSKVFSGSCWCGWDNYCMCTPSLAIDTVVEVVGSQTGKVESILVIRRKDNGKLACIGGFVEVGEKLEDTVRREVMEETGLAVTDIRMIPTVYDDPARDVRRHTVSIAFV--VRATGKPRPGSEEEAIVKIPLDEVRHHLEEFAFDHSQILIDY----LKSDSSASTPNPPHDPNMLV 811
            P C + F        GSC CG   +C+CTPS+A+D ++E+  S   KV  +  + R+D   LA +GGF++VGE  E  +RREV+EETGL +  +R    ++  P RD RRHT S+ F+  V A      G + + I ++P++E+  H ++FAFDH  I+  Y    L++DS +    P  D ++++
Sbjct:   30 PLCQRDFIQAGAA--GSCLCGEGQFCLCTPSIAVDAIIEMCDSND-KVLRVAFVMRRDGRGLAIVGGFLKVGESAEAGIRREVLEETGLTLRSLRQW-CLFSSPERDSRRHTASLVFIAQVAADEAMAAGDDAKDIRQVPIEELLAHPQKFAFDHGVIVEAYVQRFLRADSHSKRRIPRVDGDVML 211
[Close]
BLAST of mRNA_H-paniculata_contig2225.5912.1 vs. uniprot
Match: A0A7R9ZQI1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZQI1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.620e-27
Identity = 67/152 (44.08%), Postives = 89/152 (58.55%), Query Frame = 2 
Query:  305 KVFSGSCWCGWDNYCMCTPSLAIDTVVEVVGSQTGK-VESILVIRRKDNGKLACIGGFVEVGEKLEDTVRREVMEETGLAVTDIRMIPTVYDDPARDVRRHTVSIAFVVRATGK--PRPGSEEEAIVKIPLDEVRHHLEEFAFDHSQILIDY 751
            K  SGSCWC   NYC+CTP+  ID +V      TGK  E + ++RR+D  +LA +GGFVE+ E  E TVRRE+ EE GL +T    +  V+ DP RD RR T S  FV +      P  G + +  V+I LDE+  H  ++  DH  IL+DY
Sbjct:   69 KTHSGSCWCSDTNYCLCTPNSTIDLIVA-----TGKHQEYVWLVRRQDTNQLATMGGFVELSENAETTVRRELQEEMGLTLTTSLSLLGVFSDPRRDDRRQTSSTVFVAQIAEDVTPHGGDDAKEAVRIHLDEIEDH--DYFSDHLTILMDY 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2225.5912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8G8_9PHAE1.050e-7959.01Nudix hydrolase domain-containing protein n=1 Tax=... [more]
D7FNI6_ECTSI7.030e-5465.73MutT-like protein n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835YUT6_9STRA9.830e-5050.57NUDIX hydrolase domain-like protein n=1 Tax=Tribon... [more]
A0A7S2CUW8_9STRA2.450e-3644.32Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8J2S8F7_9STRA4.550e-3644.39Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y7B7_AURAN3.020e-3243.09Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1Z5JSC3_FISSO7.110e-3144.23Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S2A6G3_TRICV8.290e-2845.70Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4B2J2_CHRCT1.560e-2736.56Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7R9ZQI1_9STRA3.620e-2744.08Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2225contigH-paniculata_contig2225:3379..8245 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score190.3
Seed ortholog evalue1e-45
Seed eggNOG ortholog2880.D7FNI6
KEGG koko:K03574
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.NUDIX domain
EggNOG OGs2S7PM@2759,COG1051@1
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Ec32 orthologEc-01_005300.1
EC3.6.1.55
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons4
Model size1820
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2225.5912.1prot_H-paniculata_contig2225.5912.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2225 4370..8097 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.509713-UTR-H-paniculata_contig2225:3378..43691622929615.509713-UTR-H-paniculata_contig2225:3378..4369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2225 3379..4369 -
1691480936.5412972-UTR-H-paniculata_contig2225:3378..43691691480936.5412972-UTR-H-paniculata_contig2225:3378..4369Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2225 3379..4369 -
1622929615.6002743-UTR-H-paniculata_contig2225:8097..82451622929615.6002743-UTR-H-paniculata_contig2225:8097..8245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2225 8098..8245 -
1691480936.5909004-UTR-H-paniculata_contig2225:8097..82451691480936.5909004-UTR-H-paniculata_contig2225:8097..8245Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2225 8098..8245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.5257745-CDS-H-paniculata_contig2225:4369..44621622929615.5257745-CDS-H-paniculata_contig2225:4369..4462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2225 4370..4462 -
1691480936.553532-CDS-H-paniculata_contig2225:4369..44621691480936.553532-CDS-H-paniculata_contig2225:4369..4462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2225 4370..4462 -
1622929615.5467262-CDS-H-paniculata_contig2225:5563..58871622929615.5467262-CDS-H-paniculata_contig2225:5563..5887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2225 5564..5887 -
1691480936.5643535-CDS-H-paniculata_contig2225:5563..58871691480936.5643535-CDS-H-paniculata_contig2225:5563..5887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2225 5564..5887 -
1622929615.5627966-CDS-H-paniculata_contig2225:6571..67151622929615.5627966-CDS-H-paniculata_contig2225:6571..6715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2225 6572..6715 -
1691480936.5737598-CDS-H-paniculata_contig2225:6571..67151691480936.5737598-CDS-H-paniculata_contig2225:6571..6715Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2225 6572..6715 -
1622929615.5819852-CDS-H-paniculata_contig2225:7977..80971622929615.5819852-CDS-H-paniculata_contig2225:7977..8097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2225 7978..8097 -
1691480936.583104-CDS-H-paniculata_contig2225:7977..80971691480936.583104-CDS-H-paniculata_contig2225:7977..8097Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2225 7978..8097 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2225.5912.1

>prot_H-paniculata_contig2225.5912.1 ID=prot_H-paniculata_contig2225.5912.1|Name=mRNA_H-paniculata_contig2225.5912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=227bp
MPTGWDLDRHKVHARARRKMYLWFLAAGCMLVWAGLAHHKKPACPKKFAG
DSKVFSGSCWCGWDNYCMCTPSLAIDTVVEVVGSQTGKVESILVIRRKDN
GKLACIGGFVEVGEKLEDTVRREVMEETGLAVTDIRMIPTVYDDPARDVR
RHTVSIAFVVRATGKPRPGSEEEAIVKIPLDEVRHHLEEFAFDHSQILID
YLKSDSSASTPNPPHDPNMLVAPPAT*
back to top

mRNA from alignment at H-paniculata_contig2225:3379..8245-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2225.5912.1 ID=mRNA_H-paniculata_contig2225.5912.1|Name=mRNA_H-paniculata_contig2225.5912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4867bp|location=Sequence derived from alignment at H-paniculata_contig2225:3379..8245- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGTGGTGGGTCGGTGCGTCTCACCCTTGCCCAACGTTCGGTAATGGAT
GAGAGGTAATTAATCTGCAGTAACACGTCTTGAAGATTCTCTAGTGCCAC
AACCTGGCTCTTGCTGCTGGGAGTGGGATTTAGAATCGCGAAGACACCAT
GCCAACCGGGTGGGATTTGGATCGACACAAGGTACACGCTCGAGCCAGGC
GGAAAATGTATCTGTGGTTTCTGGCAGCAGGGTGCATGCTGGTCTGGGCG
GGTCTGGCTCATCATAAGGTATGTGTCTATGGGCAATCCCAAGTAATGCA
TGGCAGACTTTCATGTTTGGCGCTTTTTCCTTGGGAAGACATCATCTGAA
TTATAAGTTAGGTTTAAAGTGCGGGATTGGATGGGTACACCAGATATTTA
TGTAATTTAGTGCTACCAACAATTCTTGACAGAAATTCATCCTGCGTTCT
GTCGGTTGAAATCCCCCACCCCCCTCTACCAAAACACCAAAAAGAAAAAT
GATATATATAGTTTTTCCGTGTGAACCCTAGTCTCTATTTACTGACTGTG
TTTCTGTATTGACATGTGTTTGTCTCTCTTGACACATATTGTCTCTCTTG
ACGTGTCCTTACGGTAGACTCACCCAGCAATTTCAATTCGATCGTACTAT
ATGGGCGTACAGCATTCGGTCAGACGATGCCTGAACGTTCTTGTGGAAAA
TAGGAATTGCTCCAACGTGAACACACTGTGGAATTACCGAACTCCGTACA
TCTACGCTAGCTCCCTGTTGGTCGCTTTTGTGCTTAGGAATTTACTCGTT
CAACTGGTCAATCGATCCTTACTTAGCACCAGTAGAAAGTTTTTGAGGAT
CATTGCAGGTTGAAAAAAAAAGTTGTGTAAGTGAGTAAACGGTTGTATGT
ACTTGGTCAGAACCCATGCCACGGCTGGAAATTGGTTGGTCCACGCGACC
AAAAGAGACCCCGTACGAAAGACGAACCCCGCGCACTATATGTCAGCTGC
ATTATCTGTTTAGGAATAGCGCCGCGCCCGAAAGGGAGAAAATCTTGATG
AATATAGCTCTAACTGTTACAAATGTTCCACCCCCCGGACAAATACGAAT
AATTGACGTGTTCGCCACGAATATTAGAAAGTATTCGCCTGAGTTTTGAA
TTGAGCGGACACACAATATGAAGTACCCACCCCTCTCCATTCCATTTACG
AGTATATTATTAGCTGTCGTGGATGGTCCGGGGCACATAAAGTATACCAG
CTCGTTCTGAAACTCAGGCGAATACCTTGTCATTTTCGTGGCGAATACAC
CAATTATTTGTATTTGTCAGGGGGGTGAAATGCACACACACACAACGTTT
TACTTAGTGTTCGCACGTCCGCTATGACAAACAGCACCCAAAGCACGACG
AAATTAAATCTAGCCTCGACCACCTTTGCTGTAGGATCTGTCCAATAGCA
CTGAGCATTCGAAGTCAGCGTTTTTAGCGTATCTGATTTCCTCACTGCCA
TCCTTGCCCTACACTGGCGCGGTGGTCCAGAAGCCTGCGTGTCCCAAGAA
ATTTGCGGGCGATTCAAAGGTATTCAGCGGCTCTTGCTGGTGCGGCTGGG
ACAACTACTGCATGTGCACGCCGAGCTTGGCCATCGATACAGTCGTAGAG
GTCGTAGGCTCGCAGACTGGGAAGGTGAGCACAGCAGGATGAACTCGCGG
TACAGACGATTTATCTTGCCGCAAAAGAGGGTTGATACATTGTCTATGCT
CTCACGAAGTACGTTGAAAACTTCGTGTTACATCATGACTGATCTCGATA
CCCGATGGCTACGCAACAAGATACGTAGGGTCGTGCCTCAAACTTTTCTC
AGAGACAACTTCTCCGAGCGGTACTAGGGATTTCTGTTGGAATTAACATC
GATCCCGAGATTTAACCCGGAGATGTGGTGCCCGGCACCTTTGACAACAT
TTGTGAGTTTTTTGGGCATAGTCCCATGGGGAATATGTTTTGGTTTTCGA
AGACTCTTTTTTGCTTGGTCACGGCACGCCGGCTTCGGTCGGTCCGCGGA
CCCATCTTGAAGCCACCACCCACACGCGCACCTTTGGGATTGTTCCTCGT
CGGTCAAACATACAACCCCAGTGCTCACATGATTGTAGACCCTTCCAACA
CACGCTTACAAGTAGTGTCGTCTGATGAAACTCATTCAAGCATACTCACA
CCACTTGTTCAAGATTTTCGTGTGATATTCGTTGATGAAAGAAAAAAAAT
GCCGTTATCAACTGTCCTCCCCTGCTTTATGTTTCGTTTTCGATGGGCGG
CGAAACAATATATCATGGCACCTGGCCCGTGAATCACCAATCAATATACC
CTTTAAAGGTGGAATCGATTCTGGTAATACGGCGGAAAGACAACGGAAAG
TTGGCCTGTATTGGTGGGTTTGTGGAGGTCGGGGAAAAATTGGAGGATAC
GGTGCGGCGAGAGGTAATGGAAGAGACAGGGTTGGCGGTGACTGATATAA
GGATGATCCCGACCGTTTACGACGATCCTGCGAGAGACGTTCGCAGGCAC
ACGGTGAGCATAGCGTTCGTGGTACGGGCAACGGGCAAGCCAAGGCCGGG
GAGCGAGGAGGAAGCGATCGTGAAAATACCGTTAGATGAAGTGCGGCATC
ATTTAGAAGAGTTCGCTTTTGACCATAGCCAGGTGAGGGGAAAAGCGAGG
GATGGGGGGGTAAGAGCGATATTAAATTAATTACATGTATTAATATATAT
ATATATATATATATATAAATACAAGATAAACAACTTACCCAATAAACGAT
AAATATTACTATGTATACACGCGTTACCGATGCAAAAATCGTATTGGATC
AAATATTCCACGGGTTCTTCCTGTACTTCTTTTTGTGTGTATTGAGCAAT
TGCGATCCATGCCTTCCACACGTCTAGCGCAAAATTAAGTGACCTCGCAG
ATTTTAGGTTTAGAGGGATACGACGTCACAAGGTGGCATCAAGGGTAGCC
GGAGCGATGCCGCTACGGGGATGATTGTATGATGGATTTGGTACCTGTGT
ATATCATGTGGAGATAAAGAACCGTGATTTGGCGAACCTTAGAAAAAACA
TTTTTTGTTTGTTTGTTTCAATATCCTCGACGTTTAGGTAAGAAATTTTT
GGCTCACCGTTTATATTATTGTTTTTCACACAGAAGCCCAATCCCCCAGA
CCCCGTCGGCGCAGGGTAAATGGTGAACCGGTGGAACTGTAACAGTATAA
TGTAACAAACGTAGTGGTAAAAAACGATGACAAAAGCAATATTTTGAACA
GGTAATCACATAGTATGACAGACATACCTTTTACCTCCACAATTTCGCCC
TTGTTGCCCGGTAACCCCTCAAGAGCTTCGCAGCGACGACAACATGTCGG
GGGTCTATTGTGCTTCTGCTGTATGGAGCTTACCTAGTAGTAGCTGTACA
GTAGTAACTCGTACCTCAAGGTTGCACCCGGACAGATATGAATAATTGGC
GTATTCGCCACGAAAATTCAAAGGTATTCGCCTGAATTTCATGATGAGCT
CATGTATTATATGTGCCCCCGACCATCCGCGAATGCTAAAAATACTCGTA
AATCGAATGGACAGCGGTGGGTACTTTTTTGTGTGTGTCCGCTCATTCTA
AAACTCACGTAAACTCTTTTTAATTTCGCGGCCAATACACCAATTATTCG
TGTTTGTCTGAGGGGTACAAGATTGCTCGCCCGCAGAACTCCCATTCCCA
ACACACTCGCTTCGCATCGTGTACCTGGCGCAGATCTTGATCGACTATTT
GAAAAGCGATTCATCAGCGTCGACACCAAACCCTCCGCATGATCCTAACA
TGCTTGTGGCGCCGCCGGCGACGTAAAGGAGAGTTACTAGCCGCTCGTGA
AGAAGCGCTTCTTCGCCATCATGTAGTGCACGATGTCTGATGTTTTTAGT
TTTTAGCGTTTGAAAAGCGATATGTTTCTCGACAAAAGGCACAGAGAGTG
GTGCTGTCAGTGAGAAGACCCCCCCCCCCCCTGGATTCAATCATTTTCCA
TGTTTTCAAAGGATGAGTACGTTTGGTTGGTCTATCGTAAGGCAGTACCA
ACCCTGTAAGGATAGACCGATTTAGCCAAACAAATAGACTGACTGATTGA
TCTAGGGTTGGCAGCAGACCAAACTGAACGTAGCTAAGGATTCAGTAGTC
CTTTTACAGGAGGAGTAAGGGCAAATGGCGTGGTACACACGGTCATCTAT
TTATGAATCGTTGGACTTCATCATTGACAATTTTTTATATGGCACTCTGC
ATTCTTCCCCTGTGCTCGTTGGGATTCTTGTTGCGGTGTTCGAGTCACAC
GTTAAGCCCCAGGTTTCAGGGACATTTTATATACCGGTTTGACTTCTTTT
TTTATTACGTATTGGGAATAATGTGTGACGACGGTCAGGGTGAGTCAAGT
TTGTTTTGGTAGTTTTGACCTTTTTACACCTTGGTGCGACTGTTAGGTTT
TTTGTTTCTCGTGTTTCTCGTGTGTTCCATCTGTTATGTTCAATATGTTT
CCTACGTTTCTGAGGCCTGTACGTTATACGGCACCAAAGAGCTAACGAAA
AGCTTTCCTTCATCGCTCTTGGTGTCGGTGTTGTGGGTGGTGGCAGTAGT
ACAGTGGTATTGGTGGTTGGAGCAGGGGTTGTGAGAGGGGATTTGGTTGA
AACACCGTGTTACATGCCACCCACTCACCGTTCCGTTGCGCATGTAAAAA
CACTGTTCAGTGTTTGCTTCTCAGATAGTGGGATAAAATAGTGCACGCTC
CTCATGTACGGTACTTGTGTGCGAACGACCGCATGGATTGAATAGTAGGC
GTGTGTATATTAAAAAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2225:3379..8245-

>mRNA_H-paniculata_contig2225.5912.1 ID=mRNA_H-paniculata_contig2225.5912.1|Name=mRNA_H-paniculata_contig2225.5912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at H-paniculata_contig2225:3379..8245- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAACCGGGTGGGATTTGGATCGACACAAGGTACACGCTCGAGCCAG
GCGGAAAATGTATCTGTGGTTTCTGGCAGCAGGGTGCATGCTGGTCTGGG
CGGGTCTGGCTCATCATAAGATGCCAACCGGGTGGGATTTGGATCGACAC
AAGGTACACGCTCGAGCCAGGCGGAAAATGTATCTGTGGTTTCTGGCAGC
AGGGTGCATGCTGGTCTGGGCGGGTCTGGCTCATCATAAGAAGCCTGCGT
GTCCCAAGAAATTTGCGGGCGATTCAAAGGTATTCAGCGGCTCTTGCTGG
TGCGGCTGGGACAACTACTGCATGTGCACGCCGAGCTTGGCCATCGATAC
AGTCGTAGAGGTCGTAGGCTCGCAGACTGGGAAGAAGCCTGCGTGTCCCA
AGAAATTTGCGGGCGATTCAAAGGTATTCAGCGGCTCTTGCTGGTGCGGC
TGGGACAACTACTGCATGTGCACGCCGAGCTTGGCCATCGATACAGTCGT
AGAGGTCGTAGGCTCGCAGACTGGGAAGGTGGAATCGATTCTGGTAATAC
GGCGGAAAGACAACGGAAAGTTGGCCTGTATTGGTGGGTTTGTGGAGGTC
GGGGAAAAATTGGAGGATACGGTGCGGCGAGAGGTAATGGAAGAGACAGG
GTTGGCGGTGACTGATATAAGGATGATCCCGACCGTTTACGACGATCCTG
CGAGAGACGTTCGCAGGCACACGGTGAGCATAGCGTTCGTGGTACGGGCA
ACGGGCAAGCCAAGGCCGGGGAGCGAGGAGGAAGCGATCGTGAAAATACC
GTTAGATGAAGTGCGGCATCATTTAGAAGAGTTCGCTTTTGACCATAGCC
AGGTGGAATCGATTCTGGTAATACGGCGGAAAGACAACGGAAAGTTGGCC
TGTATTGGTGGGTTTGTGGAGGTCGGGGAAAAATTGGAGGATACGGTGCG
GCGAGAGGTAATGGAAGAGACAGGGTTGGCGGTGACTGATATAAGGATGA
TCCCGACCGTTTACGACGATCCTGCGAGAGACGTTCGCAGGCACACGGTG
AGCATAGCGTTCGTGGTACGGGCAACGGGCAAGCCAAGGCCGGGGAGCGA
GGAGGAAGCGATCGTGAAAATACCGTTAGATGAAGTGCGGCATCATTTAG
AAGAGTTCGCTTTTGACCATAGCCAGATCTTGATCGACTATTTGAAAAGC
GATTCATCAGCGTCGACACCAAACCCTCCGCATGATCCTAACATGCTTGT
GGCGCCGCCGGCGACGTAAATCTTGATCGACTATTTGAAAAGCGATTCAT
CAGCGTCGACACCAAACCCTCCGCATGATCCTAACATGCTTGTGGCGCCG
CCGGCGACGTAA
back to top