mRNA_H-paniculata_contig22247.5911.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22247.5911.1
Unique NamemRNA_H-paniculata_contig22247.5911.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22247.5911.1 vs. uniprot
Match: A0A6H5KHQ5_9PHAE (FAD-binding PCMH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.230e-25
Identity = 49/63 (77.78%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    4 MSRVLSLDLVNGTAHVEAGIVGRHLSQQLASSGVTMGHEPDSLEFSTLGGWVATRASGMKRGR 192
            M RVL +D+ NGTAH++AG+VGR L+ +LA  GVTMGHEPDSLEFSTLGGWVATRASGMKRGR
Sbjct: 1702 MDRVLDVDVANGTAHIQAGVVGRKLAAELAERGVTMGHEPDSLEFSTLGGWVATRASGMKRGR 1764
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BLAST of mRNA_H-paniculata_contig22247.5911.1 vs. uniprot
Match: D7FUE9_ECTSI (Alkylglycerone-phosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE9_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 9.920e-24
Identity = 48/63 (76.19%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    4 MSRVLSLDLVNGTAHVEAGIVGRHLSQQLASSGVTMGHEPDSLEFSTLGGWVATRASGMKRGR 192
            M RVL +D  NGTAH++AG+VGR L+ +LA  GVT GHEPDSLEFSTLGGWVATRASGMKRGR
Sbjct: 2082 MDRVLDVDDANGTAHIQAGVVGRKLAAELAERGVTTGHEPDSLEFSTLGGWVATRASGMKRGR 2144
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BLAST of mRNA_H-paniculata_contig22247.5911.1 vs. uniprot
Match: A0A067QFW3_9AGAM (Alkylglycerone-phosphate synthase n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067QFW3_9AGAM)

HSP 1 Score: 93.6 bits (231), Expect = 9.200e-21
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 QMSRVLSLDLVNGTAHVEAGIVGRHLSQQLASSGVTMGHEPDSLEFSTLGGWVATRASGMKRGR 192
            +M+R+L LD  NG AHVEAG VGRHL + L   G T+GHEPDS+EFSTLGGWVAT ASGMK+ +
Sbjct:  250 RMNRILWLDTANGLAHVEAGAVGRHLEKALNGHGFTLGHEPDSMEFSTLGGWVATNASGMKKNK 313
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BLAST of mRNA_H-paniculata_contig22247.5911.1 vs. uniprot
Match: A0A511TFK2_MYXFU (Alkylglycerone-phosphate synthase n=5 Tax=Myxococcus TaxID=32 RepID=A0A511TFK2_MYXFU)

HSP 1 Score: 92.0 bits (227), Expect = 3.190e-20
Identity = 44/64 (68.75%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 QMSRVLSLDLVNGTAHVEAGIVGRHLSQQLASSGVTMGHEPDSLEFSTLGGWVATRASGMKRGR 192
            QM+RVL +D VN  A +EAG  GRHL  +LA  G TMGHEPDSLEFSTLGGW+AT ASGMK+ R
Sbjct:  215 QMNRVLWIDTVNRMACIEAGATGRHLMSELAKFGFTMGHEPDSLEFSTLGGWIATNASGMKKNR 278
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BLAST of mRNA_H-paniculata_contig22247.5911.1 vs. uniprot
Match: L7ULM0_MYXSD (Alkylglycerone-phosphate synthase n=2 Tax=Myxococcus TaxID=32 RepID=L7ULM0_MYXSD)

HSP 1 Score: 91.7 bits (226), Expect = 4.370e-20
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 QMSRVLSLDLVNGTAHVEAGIVGRHLSQQLASSGVTMGHEPDSLEFSTLGGWVATRASGMKRGR 192
            QM+R+L +D VN  A +EAG  GRHL  +LA  G+TMGHEPDSLEFSTLGGW+AT ASGMK+ R
Sbjct:  221 QMNRILWIDPVNRMACIEAGATGRHLMSELAKFGLTMGHEPDSLEFSTLGGWIATNASGMKKNR 284
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BLAST of mRNA_H-paniculata_contig22247.5911.1 vs. uniprot
Match: UPI000272FBE4 (FAD-binding oxidoreductase n=1 Tax=Myxococcus hansupus TaxID=1297742 RepID=UPI000272FBE4)

HSP 1 Score: 91.7 bits (226), Expect = 4.370e-20
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:    1 QMSRVLSLDLVNGTAHVEAGIVGRHLSQQLASSGVTMGHEPDSLEFSTLGGWVATRASGMKRGR 192
            QM+R+L +D VN  A +EAG  GRHL  +LA  G TMGHEPDSLEFSTLGGW+AT ASGMK+ R
Sbjct:  221 QMNRILWIDTVNRMACIEAGATGRHLMSELAKYGFTMGHEPDSLEFSTLGGWIATNASGMKKNR 284
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BLAST of mRNA_H-paniculata_contig22247.5911.1 vs. uniprot
Match: Q1DBP5_MYXXD (Alkylglycerone-phosphate synthase n=17 Tax=Myxococcaceae TaxID=31 RepID=Q1DBP5_MYXXD)

HSP 1 Score: 91.3 bits (225), Expect = 5.960e-20
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 QMSRVLSLDLVNGTAHVEAGIVGRHLSQQLASSGVTMGHEPDSLEFSTLGGWVATRASGMKRGR 192
            QM+R+L +D VN  A +EAG  GRHL ++LA  G TMGHEPDSLEFSTLGGW+AT ASGMK+ R
Sbjct:  221 QMNRILWVDPVNRMACIEAGATGRHLMEELAKFGFTMGHEPDSLEFSTLGGWIATNASGMKKNR 284
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BLAST of mRNA_H-paniculata_contig22247.5911.1 vs. uniprot
Match: UPI001CFC30C9 (alkyldihydroxyacetonephosphate synthase, peroxisomal n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFC30C9)

HSP 1 Score: 90.9 bits (224), Expect = 8.140e-20
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 QMSRVLSLDLVNGTAHVEAGIVGRHLSQQLASSGVTMGHEPDSLEFSTLGGWVATRASGMKR 186
            QM+R+L +D  N TAHVEAGI G++L +QLA SG   GHEPDS+EFSTLGGWVATRASGMK+
Sbjct:  232 QMNRILWIDEKNLTAHVEAGINGQNLEKQLAESGYCTGHEPDSMEFSTLGGWVATRASGMKK 293
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BLAST of mRNA_H-paniculata_contig22247.5911.1 vs. uniprot
Match: A0A8J6EZC1_ELECQ (Alkylglycerone-phosphate synthase n=2 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6EZC1_ELECQ)

HSP 1 Score: 90.5 bits (223), Expect = 9.970e-20
Identity = 44/62 (70.97%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 QMSRVLSLDLVNGTAHVEAGIVGRHLSQQLASSGVTMGHEPDSLEFSTLGGWVATRASGMKR 186
            QMSR+L +D  N TAHVEAGI G+ L +QL  SG   GHEPDS+EFSTLGGWVATRASGMK+
Sbjct:   99 QMSRILWIDEKNLTAHVEAGITGQDLEKQLLESGYCTGHEPDSMEFSTLGGWVATRASGMKK 160
[Close]
BLAST of mRNA_H-paniculata_contig22247.5911.1 vs. uniprot
Match: A0A6P7YIX7_9AMPH (Alkylglycerone-phosphate synthase n=3 Tax=Gymnophiona TaxID=8445 RepID=A0A6P7YIX7_9AMPH)

HSP 1 Score: 90.5 bits (223), Expect = 1.110e-19
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 QMSRVLSLDLVNGTAHVEAGIVGRHLSQQLASSGVTMGHEPDSLEFSTLGGWVATRASGMKR 186
            QM+R+L LD  N TAHVEAGI+G+ L +QL  SG   GHEPDS+EFST+GGWVATRASGMK+
Sbjct:  237 QMNRILWLDEKNLTAHVEAGIIGQDLERQLGESGYCTGHEPDSMEFSTVGGWVATRASGMKK 298
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22247.5911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KHQ5_9PHAE3.230e-2577.78FAD-binding PCMH-type domain-containing protein n=... [more]
D7FUE9_ECTSI9.920e-2476.19Alkylglycerone-phosphate synthase n=1 Tax=Ectocarp... [more]
A0A067QFW3_9AGAM9.200e-2167.19Alkylglycerone-phosphate synthase n=1 Tax=Jaapia a... [more]
A0A511TFK2_MYXFU3.190e-2068.75Alkylglycerone-phosphate synthase n=5 Tax=Myxococc... [more]
L7ULM0_MYXSD4.370e-2067.19Alkylglycerone-phosphate synthase n=2 Tax=Myxococc... [more]
UPI000272FBE44.370e-2067.19FAD-binding oxidoreductase n=1 Tax=Myxococcus hans... [more]
Q1DBP5_MYXXD5.960e-2067.19Alkylglycerone-phosphate synthase n=17 Tax=Myxococ... [more]
UPI001CFC30C98.140e-2070.97alkyldihydroxyacetonephosphate synthase, peroxisom... [more]
A0A8J6EZC1_ELECQ9.970e-2070.97Alkylglycerone-phosphate synthase n=2 Tax=Eleuther... [more]
A0A6P7YIX7_9AMPH1.110e-1969.35Alkylglycerone-phosphate synthase n=3 Tax=Gymnophi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22247contigH-paniculata_contig22247:3052..3246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue1e-19
Seed eggNOG ortholog2880.D7FUE9
Preferred nameAGPS
KEGG rclassRC00004,RC00020,RC02886
KEGG koko:K00803,ko:K13356
KEGG ReactionR04311,R09470
KEGG Pathwayko00073,ko00565,ko01100,ko04146,ko04212,map00073,map00565,map01100,map04146,map04212
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005777,GO:0005778,GO:0005782,GO:0005829,GO:0006605,GO:0006625,GO:0006629,GO:0006662,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0008609,GO:0008610,GO:0008611,GO:0009058,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016740,GO:0016765,GO:0018904,GO:0031090,GO:0031903,GO:0031907,GO:0031974,GO:0031981,GO:0033036,GO:0033365,GO:0034613,GO:0036094,GO:0042579,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043574,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046485,GO:0046504,GO:0046907,GO:0048037,GO:0050660,GO:0050662,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071949,GO:0072594,GO:0072662,GO:0072663,GO:0097159,GO:0097384,GO:0098588,GO:0098805,GO:1901265,GO:1901363,GO:1901503,GO:1901576
EggNOG free text desc.alkylglycerone-phosphate synthase activity
EggNOG OGsCOG0277@1,COG3320@1,KOG1221@2759,KOG1233@2759
EC1.2.1.84,2.5.1.26
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size195
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.4537525-CDS-H-paniculata_contig22247:3051..32431622929615.4537525-CDS-H-paniculata_contig22247:3051..3243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22247 3052..3243 -
1691480936.5198774-CDS-H-paniculata_contig22247:3051..32431691480936.5198774-CDS-H-paniculata_contig22247:3051..3243Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22247 3052..3243 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.469311-UTR-H-paniculata_contig22247:3243..32461622929615.469311-UTR-H-paniculata_contig22247:3243..3246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22247 3244..3246 -
1691480936.5312274-UTR-H-paniculata_contig22247:3243..32461691480936.5312274-UTR-H-paniculata_contig22247:3243..3246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22247 3244..3246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22247.5911.1prot_H-paniculata_contig22247.5911.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22247 3052..3243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22247.5911.1

>prot_H-paniculata_contig22247.5911.1 ID=prot_H-paniculata_contig22247.5911.1|Name=mRNA_H-paniculata_contig22247.5911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MSRVLSLDLVNGTAHVEAGIVGRHLSQQLASSGVTMGHEPDSLEFSTLGG
WVATRASGMKRGR*
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mRNA from alignment at H-paniculata_contig22247:3052..3246-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22247.5911.1 ID=mRNA_H-paniculata_contig22247.5911.1|Name=mRNA_H-paniculata_contig22247.5911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig22247:3052..3246- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATGTCTCGAGTCCTGTCGTTAGACTTGGTCAACGGTACTGCACACGT
GGAGGCAGGGATAGTAGGTCGACACCTGTCCCAGCAGCTAGCCTCCAGCG
GTGTCACCATGGGACACGAGCCAGACAGTCTCGAGTTCTCAACCTTGGGT
GGCTGGGTTGCCACACGGGCTTCAGGGATGAAACGCGGACGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig22247:3052..3246-

>mRNA_H-paniculata_contig22247.5911.1 ID=mRNA_H-paniculata_contig22247.5911.1|Name=mRNA_H-paniculata_contig22247.5911.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig22247:3052..3246- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCGAGTCCTGTCGTTAGACTTGGTCAACGGTACTGCACACGTGGA
GGCAGGGATAGTAGGTCGACACCTGTCCCAGCAGCTAGCCTCCAGCGGTG
TCACCATGGGACACGAGCCAGACAGTCTCGAGTTCTCAACCTTGGGTGGC
TGGGTTGCCACACGGGCTTCAGGGATGAAACGCGGACGGTGAATGTCTCG
AGTCCTGTCGTTAGACTTGGTCAACGGTACTGCACACGTGGAGGCAGGGA
TAGTAGGTCGACACCTGTCCCAGCAGCTAGCCTCCAGCGGTGTCACCATG
GGACACGAGCCAGACAGTCTCGAGTTCTCAACCTTGGGTGGCTGGGTTGC
CACACGGGCTTCAGGGATGAAACGCGGACGGTGA
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