mRNA_H-paniculata_contig22240.5910.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22240.5910.1
Unique NamemRNA_H-paniculata_contig22240.5910.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22240.5910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22240contigH-paniculata_contig22240:492..1688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size114
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929615.3606951-CDS-H-paniculata_contig22240:493..5411622929615.3606951-CDS-H-paniculata_contig22240:493..541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22240 494..541 -
1691480936.5028417-CDS-H-paniculata_contig22240:493..5411691480936.5028417-CDS-H-paniculata_contig22240:493..541Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22240 494..541 -
1622929615.3828115-CDS-H-paniculata_contig22240:1625..16881622929615.3828115-CDS-H-paniculata_contig22240:1625..1688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22240 1626..1688 -
1691480936.510902-CDS-H-paniculata_contig22240:1625..16881691480936.510902-CDS-H-paniculata_contig22240:1625..1688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22240 1626..1688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22240.5910.1prot_H-paniculata_contig22240.5910.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22240 494..1688 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22240.5910.1

>prot_H-paniculata_contig22240.5910.1 ID=prot_H-paniculata_contig22240.5910.1|Name=mRNA_H-paniculata_contig22240.5910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
CRGNPAGTLQAARTRRLQNMCNSFRILSARFILVKGE
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mRNA from alignment at H-paniculata_contig22240:492..1688-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22240.5910.1 ID=mRNA_H-paniculata_contig22240.5910.1|Name=mRNA_H-paniculata_contig22240.5910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1197bp|location=Sequence derived from alignment at H-paniculata_contig22240:492..1688- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCCGAGGAAATCCTGCCGGAACGCTGCAAGCAGCGCGAACCCGACGACT
ACAAAACATGTGTGTAAATGACACTCGGTGAGTGTCAATCAGTTTTCACG
CTGATTAGAACAGATACTACACATGATCTTAGCCAAAAGGCCGAGAAGCT
ACGCTTGCAAGCGTACGTCAAACGTTGCTGTTATACTAAAATGTTTTAAC
AACCACAAGGCCCGCAGTCTACAAATCATACACACTAGAGTATTCGGATA
CCGTAACCAACCAAACACACCATCACACCGATGTCAGTCACTACCAGTAA
CATGTTCTGTTCGGAATTCTGTACCGATAGATTTGTTCAGACTGACTCAG
ACACAAGGAAATTCCGCACGACATAAGTAGGAAGTAGCCACTGTATTATT
ACCACCGACACATGCATACGACCGACACTAGGTAATACAGGCCAACACCA
CCTGCGTTTGATTGCGTGCGCTACCATCTTGACGGGACAACGAAAGAAAA
AAGAAAGCACGTGACATATTATGCCATTTGTCCGACAAAGAGAAGAAGTA
GTAGTAATTCTGCTCGTTATATTTCTCCTTGTTGCGACAAATTGAGTGCC
GCTCAGGTGTATATAGCTCTTCAAATTTCTTGCTCCTGCGCCAAATTCTT
GGCAATATTGAACCTACACCCCAAAAGCATCATCGCCGCAGAAAGGAGTG
CCTTCGGGCAGCGCGCTCTTCCTCGGACTGCGTTCTTGCGTCCTGCTTAT
TTTATCACCACGAGGTGATGACATCGAGTGGCGCTATTTTCAGATAGGCT
GGATGCCGTAGTATAAGTACAGTCTGGCGGTGCTACAGTTAGCAAAAATG
TTGCCTGAATACCCCAAGATCAGACACGTACATACTGTACTTGGATAAAG
AGGTAATGCAAAACATCGGGATCAAATGGAGCAGCATTTTGCGTCACGTC
GATCAAATAAATGCATAGTAGTTCTAAATCCTGTCTGTCTTGTAGCTAGT
TCGATGTTGGCGGTCTGCTCATGGGATTTTTTAGAGTAGCGAGTACCATC
ATGTCATTATTGTCGTGAAGGGTATTGTGGCGCGTCCGCTTGTTGAGTTT
GTGGTTGTTATGCTGGTTACCCCACGAGTGGGGTCAAAAATCGTAAGAAC
TCCTTCAGGATCCTCTCCGCACGGTTTATCCTAGTAAAAGGCGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig22240:492..1688-

>mRNA_H-paniculata_contig22240.5910.1 ID=mRNA_H-paniculata_contig22240.5910.1|Name=mRNA_H-paniculata_contig22240.5910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig22240:492..1688- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCCGAGGAAATCCTGCCGGAACGCTGCAAGCAGCGCGAACCCGACGACT
ACAAAACATGTGTTGCCGAGGAAATCCTGCCGGAACGCTGCAAGCAGCGC
GAACCCGACGACTACAAAACATGTGTAACTCCTTCAGGATCCTCTCCGCA
CGGTTTATCCTAGTAAAAGGCGAGAACTCCTTCAGGATCCTCTCCGCACG
GTTTATCCTAGTAAAAGGCGAG
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