mRNA_H-paniculata_contig2222.5906.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2222.5906.1
Unique NamemRNA_H-paniculata_contig2222.5906.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2222.5906.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 4.150e-20
Identity = 53/120 (44.17%), Postives = 76/120 (63.33%), Query Frame = -2 
Query:    9 AQFSLHCTDLLYHEMSRHRT--PGAETPLSLLRAVKLNHVLPALLLSTDGQFPRRDSFLVVKRGDISVVLPWLMTCTEAAVSRRRSTVGSTSSAA*YRKAAAACRQKGGISNAARVLLSD 362
            A+   H  +L+  E++  R   P + TPLSLLRA+KL ++LPALL S DG+  R++ +  +KRGDIS  LPWLM   +AA SR R  V   +    +++A  ACR  GG+ +AAR LL++
Sbjct:  365 ARLQTHALNLVNKELAERRELPPRSGTPLSLLRAIKLWYLLPALLHSFDGRITRKERYKALKRGDISSTLPWLMEYAKAASSRSRGPVQEETQEDKFKRAEQACRHSGGVKDAARALLAE 484
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2222.5906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE4.150e-2044.17Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2222contigH-paniculata_contig2222:2004..2381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size379
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.8259513-CDS-H-paniculata_contig2222:2003..23811622929614.8259513-CDS-H-paniculata_contig2222:2003..2381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2222 2004..2381 +
1691480936.2794213-CDS-H-paniculata_contig2222:2003..23811691480936.2794213-CDS-H-paniculata_contig2222:2003..2381Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2222 2004..2381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2222.5906.1prot_H-paniculata_contig2222.5906.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2222 2004..2381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2222.5906.1

>prot_H-paniculata_contig2222.5906.1 ID=prot_H-paniculata_contig2222.5906.1|Name=mRNA_H-paniculata_contig2222.5906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
ATSSDNNTLAALEIPPFCLHAAAAFLYQAAEDVLPTVDRRRDTAASVHVM
SHGSTTLMSPLFTTRKLSLLGNCPSVDRSSAGRTWLSFTARNKDSGVSAP
GVRCRLISWYRRSVQCRENCARWHWR
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mRNA from alignment at H-paniculata_contig2222:2004..2381+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2222.5906.1 ID=mRNA_H-paniculata_contig2222.5906.1|Name=mRNA_H-paniculata_contig2222.5906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=378bp|location=Sequence derived from alignment at H-paniculata_contig2222:2004..2381+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGACTTCGTCCGACAACAACACTCTCGCCGCGTTAGAGATCCCCCCTTT
TTGTCTGCACGCAGCTGCCGCCTTCCTGTATCAGGCCGCCGAAGACGTAC
TCCCTACCGTCGACCGGCGGCGGGACACCGCGGCCTCTGTGCACGTCATG
AGCCACGGGAGCACGACGCTGATGTCTCCTCTCTTCACAACGAGGAAGCT
GTCCCTCCTGGGGAATTGTCCGTCGGTCGATAGAAGCAGCGCCGGGAGAA
CGTGGTTGAGCTTTACTGCTCGCAACAAGGATAGCGGCGTCTCCGCTCCC
GGCGTCCGGTGCCGGCTCATTTCGTGGTACAGGAGGTCCGTACAGTGCAG
AGAGAATTGTGCTAGGTGGCATTGGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig2222:2004..2381+

>mRNA_H-paniculata_contig2222.5906.1 ID=mRNA_H-paniculata_contig2222.5906.1|Name=mRNA_H-paniculata_contig2222.5906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig2222:2004..2381+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGACTTCGTCCGACAACAACACTCTCGCCGCGTTAGAGATCCCCCCTTT
TTGTCTGCACGCAGCTGCCGCCTTCCTGTATCAGGCCGCCGAAGACGTAC
TCCCTACCGTCGACCGGCGGCGGGACACCGCGGCCTCTGTGCACGTCATG
AGCCACGGGAGCACGACGCTGATGTCTCCTCTCTTCACAACGAGGAAGCT
GTCCCTCCTGGGGAATTGTCCGTCGGTCGATAGAAGCAGCGCCGGGAGAA
CGTGGTTGAGCTTTACTGCTCGCAACAAGGATAGCGGCGTCTCCGCTCCC
GGCGTCCGGTGCCGGCTCATTTCGTGGTACAGGAGGTCCGTACAGTGCAG
AGAGAATTGTGCTAGGTGGCATTGGAGAGCGACTTCGTCCGACAACAACA
CTCTCGCCGCGTTAGAGATCCCCCCTTTTTGTCTGCACGCAGCTGCCGCC
TTCCTGTATCAGGCCGCCGAAGACGTACTCCCTACCGTCGACCGGCGGCG
GGACACCGCGGCCTCTGTGCACGTCATGAGCCACGGGAGCACGACGCTGA
TGTCTCCTCTCTTCACAACGAGGAAGCTGTCCCTCCTGGGGAATTGTCCG
TCGGTCGATAGAAGCAGCGCCGGGAGAACGTGGTTGAGCTTTACTGCTCG
CAACAAGGATAGCGGCGTCTCCGCTCCCGGCGTCCGGTGCCGGCTCATTT
CGTGGTACAGGAGGTCCGTACAGTGCAGAGAGAATTGTGCTAGGTGGCAT
TGGAGA
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