mRNA_H-paniculata_contig2222.5905.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2222.5905.1
Unique NamemRNA_H-paniculata_contig2222.5905.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2222.5905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2222contigH-paniculata_contig2222:73..527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size447
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.7673879-UTR-H-paniculata_contig2222:72..801622929614.7673879-UTR-H-paniculata_contig2222:72..80Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2222 73..80 +
1691480936.2618387-UTR-H-paniculata_contig2222:72..801691480936.2618387-UTR-H-paniculata_contig2222:72..80Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2222 73..80 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.7790985-CDS-H-paniculata_contig2222:80..5271622929614.7790985-CDS-H-paniculata_contig2222:80..527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2222 81..527 +
1691480936.2710466-CDS-H-paniculata_contig2222:80..5271691480936.2710466-CDS-H-paniculata_contig2222:80..527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2222 81..527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2222.5905.1prot_H-paniculata_contig2222.5905.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2222 81..527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2222.5905.1

>prot_H-paniculata_contig2222.5905.1 ID=prot_H-paniculata_contig2222.5905.1|Name=mRNA_H-paniculata_contig2222.5905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MLRNLALAASVGSIPLNGSSGPGGLPAGGRLSSSDSKVVILALRTRLPTF
PCRRRETLPGASYRPRTSMFGVGSDPSSLRPPWTHATSPGGSTAAYCSAL
TPPCSADTRRVTPNKRTICALGRCARTRSPIGPDESAIICGSMPHILPT
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mRNA from alignment at H-paniculata_contig2222:73..527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2222.5905.1 ID=mRNA_H-paniculata_contig2222.5905.1|Name=mRNA_H-paniculata_contig2222.5905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=455bp|location=Sequence derived from alignment at H-paniculata_contig2222:73..527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCCGACATGCTGCGGAATCTCGCTTTAGCCGCGTCGGTCGGCTCCATC
CCTCTGAATGGGTCATCAGGGCCAGGTGGCCTACCGGCCGGGGGTAGGTT
GTCAAGCAGCGATAGCAAGGTCGTTATCTTGGCCTTGCGGACTAGATTAC
CGACCTTCCCTTGCAGACGACGGGAGACCCTCCCTGGTGCGTCGTACCGT
CCTAGAACGTCGATGTTCGGTGTAGGCAGCGATCCGTCTTCGCTCCGTCC
TCCGTGGACCCACGCGACCAGCCCGGGCGGCAGCACCGCAGCTTATTGTT
CGGCGCTAACTCCTCCCTGTTCTGCCGACACGCGGAGAGTCACCCCCAAT
AAGCGCACCATCTGTGCCCTGGGAAGATGTGCCCGCACCCGCTCCCCCAT
CGGTCCCGACGAGTCCGCAATTATCTGCGGCAGCATGCCGCACATACTCC
CCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig2222:73..527+

>mRNA_H-paniculata_contig2222.5905.1 ID=mRNA_H-paniculata_contig2222.5905.1|Name=mRNA_H-paniculata_contig2222.5905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig2222:73..527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCGGAATCTCGCTTTAGCCGCGTCGGTCGGCTCCATCCCTCTGAA
TGGGTCATCAGGGCCAGGTGGCCTACCGGCCGGGGGTAGGTTGTCAAGCA
GCGATAGCAAGGTCGTTATCTTGGCCTTGCGGACTAGATTACCGACCTTC
CCTTGCAGACGACGGGAGACCCTCCCTGGTGCGTCGTACCGTCCTAGAAC
GTCGATGTTCGGTGTAGGCAGCGATCCGTCTTCGCTCCGTCCTCCGTGGA
CCCACGCGACCAGCCCGGGCGGCAGCACCGCAGCTTATTGTTCGGCGCTA
ACTCCTCCCTGTTCTGCCGACACGCGGAGAGTCACCCCCAATAAGCGCAC
CATCTGTGCCCTGGGAAGATGTGCCCGCACCCGCTCCCCCATCGGTCCCG
ACGAGTCCGCAATTATCTGCGGCAGCATGCCGCACATACTCCCCACCATG
CTGCGGAATCTCGCTTTAGCCGCGTCGGTCGGCTCCATCCCTCTGAATGG
GTCATCAGGGCCAGGTGGCCTACCGGCCGGGGGTAGGTTGTCAAGCAGCG
ATAGCAAGGTCGTTATCTTGGCCTTGCGGACTAGATTACCGACCTTCCCT
TGCAGACGACGGGAGACCCTCCCTGGTGCGTCGTACCGTCCTAGAACGTC
GATGTTCGGTGTAGGCAGCGATCCGTCTTCGCTCCGTCCTCCGTGGACCC
ACGCGACCAGCCCGGGCGGCAGCACCGCAGCTTATTGTTCGGCGCTAACT
CCTCCCTGTTCTGCCGACACGCGGAGAGTCACCCCCAATAAGCGCACCAT
CTGTGCCCTGGGAAGATGTGCCCGCACCCGCTCCCCCATCGGTCCCGACG
AGTCCGCAATTATCTGCGGCAGCATGCCGCACATACTCCCCACC
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