mRNA_H-paniculata_contig22218.5904.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig22218.5904.1
Unique NamemRNA_H-paniculata_contig22218.5904.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig22218.5904.1 vs. uniprot
Match: D8LT02_ECTSI (Dimethylargininase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT02_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.360e-38
Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    4 MAAAVGRQTYKGVGVPDPVSANVVSVIAKGEWKGGIIQGGRCEESLRLIRGCFTEAEQARLLEVDYSEMIKPDAALTCCSVLLGGQPA 267
            MA+ VG   YK +GVPD  SANVVSVI KG+W+G +IQGGRCEES  LIR CFTE EQA++LE+DYSEMIKPDAALTCCSVLLGGQPA
Sbjct:  207 MASDVGETAYKAIGVPDQPSANVVSVIHKGQWRGALIQGGRCEESRWLIRKCFTEKEQAKVLEIDYSEMIKPDAALTCCSVLLGGQPA 294
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BLAST of mRNA_H-paniculata_contig22218.5904.1 vs. uniprot
Match: A0A835YN07_9STRA (Dimethylargininase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN07_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.290e-12
Identity = 39/90 (43.33%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:    1 RMAAAVGRQTYKGVGVPDPVSANVVSVIAKGEWKGGIIQGGRCEESLRLIRGCFTEAE------QARLLEVDYSEMIKPDAALTCCSVLL 252
            RMA AV    Y  V VPD  +ANVVS+ +   W+G ++QG RC +S+ L+R  F  +       Q  + E+D SE IK D +LTC SV+L
Sbjct:  206 RMAGAVDGVAYTSVAVPDEFAANVVSIHSD-TWRGALVQGNRCRDSVNLLRSAFASSASSSSSLQGAVHELDMSEFIKADGSLTCLSVIL 294
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22218.5904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT02_ECTSI1.360e-3876.14Dimethylargininase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835YN07_9STRA1.290e-1243.33Dimethylargininase n=1 Tax=Tribonema minus TaxID=3... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig22218contigH-paniculata_contig22218:1054..2072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.5
Seed ortholog evalue9.4e-32
Seed eggNOG ortholog2880.D8LT02
Preferred nameDDAH1
KEGG koko:K01482
Hectar predicted targeting categoryother localisation
GOsGO:0000052,GO:0001505,GO:0003008,GO:0003013,GO:0003018,GO:0003073,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006464,GO:0006520,GO:0006525,GO:0006527,GO:0006807,GO:0006809,GO:0007154,GO:0007165,GO:0007263,GO:0008015,GO:0008150,GO:0008152,GO:0008217,GO:0008270,GO:0008285,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0016054,GO:0016403,GO:0016597,GO:0016787,GO:0016810,GO:0016813,GO:0017014,GO:0017144,GO:0019222,GO:0019538,GO:0019752,GO:0019932,GO:0022603,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031406,GO:0032501,GO:0032768,GO:0034641,GO:0035556,GO:0036094,GO:0036211,GO:0042127,GO:0042133,GO:0042136,GO:0043114,GO:0043116,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043412,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0045428,GO:0045429,GO:0045765,GO:0045766,GO:0046209,GO:0046395,GO:0046872,GO:0046914,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0050999,GO:0051094,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051341,GO:0051716,GO:0065007,GO:0065008,GO:0065009,GO:0071704,GO:0072593,GO:0080134,GO:0080135,GO:1900037,GO:1900038,GO:1901342,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606,GO:1903409,GO:1903426,GO:1903428,GO:1904018,GO:1904407,GO:2000026,GO:2000377,GO:2000379,GO:2001057
EggNOG free text desc.dimethylargininase activity
EggNOG OGs2QWPA@2759,COG1834@1
EC3.5.3.18
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04147
Exons2
Model size405
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig22218.5904.1prot_H-paniculata_contig22218.5904.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig22218 1189..2069 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.6649897-UTR-H-paniculata_contig22218:1053..11881622929614.6649897-UTR-H-paniculata_contig22218:1053..1188Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22218 1054..1188 -
1691480936.213699-UTR-H-paniculata_contig22218:1053..11881691480936.213699-UTR-H-paniculata_contig22218:1053..1188Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22218 1054..1188 -
1622929614.7159076-UTR-H-paniculata_contig22218:2069..20721622929614.7159076-UTR-H-paniculata_contig22218:2069..2072Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22218 2070..2072 -
1691480936.2479222-UTR-H-paniculata_contig22218:2069..20721691480936.2479222-UTR-H-paniculata_contig22218:2069..2072Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig22218 2070..2072 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.6825304-CDS-H-paniculata_contig22218:1188..14011622929614.6825304-CDS-H-paniculata_contig22218:1188..1401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22218 1189..1401 -
1691480936.2297094-CDS-H-paniculata_contig22218:1188..14011691480936.2297094-CDS-H-paniculata_contig22218:1188..1401Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22218 1189..1401 -
1622929614.699009-CDS-H-paniculata_contig22218:2015..20691622929614.699009-CDS-H-paniculata_contig22218:2015..2069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22218 2016..2069 -
1691480936.2394764-CDS-H-paniculata_contig22218:2015..20691691480936.2394764-CDS-H-paniculata_contig22218:2015..2069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig22218 2016..2069 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig22218.5904.1

>prot_H-paniculata_contig22218.5904.1 ID=prot_H-paniculata_contig22218.5904.1|Name=mRNA_H-paniculata_contig22218.5904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MAAAVGRQTYKGVGVPDPVSANVVSVIAKGEWKGGIIQGGRCEESLRLIR
GCFTEAEQARLLEVDYSEMIKPDAALTCCSVLLGGQPA*
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mRNA from alignment at H-paniculata_contig22218:1054..2072-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig22218.5904.1 ID=mRNA_H-paniculata_contig22218.5904.1|Name=mRNA_H-paniculata_contig22218.5904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1019bp|location=Sequence derived from alignment at H-paniculata_contig22218:1054..2072- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGATGGCAGCTGCAGTTGGACGGCAGACGTACAAAGGTGTTGGGGTGCC
TGATCCGGTAAGGTGTCCGATTGCTATCCAGCAGTCATTGTATGATTTTT
CGTTTTTACTCGCATTAAAATCATCGGCGGTAACATCACGGCGTTCATAA
TGTAGTGGGAAACGCCGTAATGATCCATCCCTTACATTCTCGGTATACGT
TGTACACATCCATAGGTGTTTTGCCTTCTTCATCGGTTGATTTTTTTCGT
CCTGACTAGAAAACACATGGGCGGAACACATGGCGGAGAAAACCAGTGGA
TGGGTTGCGTTCCCCCCGTCTTTTTCGCAAGCTTGAACCTCCTGGCGAAA
CGTAGAGGGGGAGATAGGGAGGGAGAGAGAAAGAACGAAAATATATATAT
ATATATGACGGAATCAATTAATTTATTCATCATATAATAAAGGGAAGAGA
GAGAGAGAAAAAAAAAAGAAAAAACAGTTTTCGGCCAGGCATGCATGGCT
TTCTTGTCGCATGCTGAATTGTTCTTTCCTCGTGATGCCTGCCATTTTCC
TCCCAAATAAAAAACGTGGTCGAAGAAGAAATATTAAAAAAAAAAACAGC
GTTAAATTCAACGCCTCCCTCACGCATACCCGCATTACGTATACCCCACA
CGCGCGCGTACACATGCACAGGTGAGCGCAAACGTGGTATCAGTGATCGC
CAAAGGTGAGTGGAAGGGAGGCATTATCCAGGGGGGGCGGTGCGAGGAGA
GTCTGCGGCTCATCCGCGGCTGCTTCACAGAGGCAGAGCAGGCTCGACTG
CTAGAGGTAGACTACTCGGAGATGATTAAGCCCGACGCAGCGTTGACCTG
CTGCTCCGTGCTGCTCGGTGGACAGCCTGCTTGAACAAGAACGGCCAAAA
AGGCGAAATGAAGCAAACAAACAGATTCTGGCTGCACCTGTCAGGATCTT
CGTTATGTCATGTACCTGTAGCGCAGCCGCTGATTGTATGTTTACTGCAT
TCCTGTACCGATTTCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig22218:1054..2072-

>mRNA_H-paniculata_contig22218.5904.1 ID=mRNA_H-paniculata_contig22218.5904.1|Name=mRNA_H-paniculata_contig22218.5904.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig22218:1054..2072- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGCTGCAGTTGGACGGCAGACGTACAAAGGTGTTGGGGTGCCTGA
TCCGATGGCAGCTGCAGTTGGACGGCAGACGTACAAAGGTGTTGGGGTGC
CTGATCCGGTGAGCGCAAACGTGGTATCAGTGATCGCCAAAGGTGAGTGG
AAGGGAGGCATTATCCAGGGGGGGCGGTGCGAGGAGAGTCTGCGGCTCAT
CCGCGGCTGCTTCACAGAGGCAGAGCAGGCTCGACTGCTAGAGGTAGACT
ACTCGGAGATGATTAAGCCCGACGCAGCGTTGACCTGCTGCTCCGTGCTG
CTCGGTGGACAGCCTGCTTGAGTGAGCGCAAACGTGGTATCAGTGATCGC
CAAAGGTGAGTGGAAGGGAGGCATTATCCAGGGGGGGCGGTGCGAGGAGA
GTCTGCGGCTCATCCGCGGCTGCTTCACAGAGGCAGAGCAGGCTCGACTG
CTAGAGGTAGACTACTCGGAGATGATTAAGCCCGACGCAGCGTTGACCTG
CTGCTCCGTGCTGCTCGGTGGACAGCCTGCTTGA
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