mRNA_H-paniculata_contig2221.5900.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2221.5900.1
Unique NamemRNA_H-paniculata_contig2221.5900.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2221.5900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2221contigH-paniculata_contig2221:5346..5691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size347
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.3977668-UTR-H-paniculata_contig2221:5345..53761622929614.3977668-UTR-H-paniculata_contig2221:5345..5376Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2221 5346..5376 +
1691480936.0875423-UTR-H-paniculata_contig2221:5345..53761691480936.0875423-UTR-H-paniculata_contig2221:5345..5376Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2221 5346..5376 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.418414-CDS-H-paniculata_contig2221:5376..56911622929614.418414-CDS-H-paniculata_contig2221:5376..5691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 5377..5691 +
1691480936.0982866-CDS-H-paniculata_contig2221:5376..56911691480936.0982866-CDS-H-paniculata_contig2221:5376..5691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 5377..5691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2221.5900.1prot_H-paniculata_contig2221.5900.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2221 5377..5691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2221.5900.1

>prot_H-paniculata_contig2221.5900.1 ID=prot_H-paniculata_contig2221.5900.1|Name=mRNA_H-paniculata_contig2221.5900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MDFSNDGMNVVVPRRCNMTASNGSGNQMGSTNSEYIITISQNNVAPVSIK
SPNRGASTAPGSHQQTSSSASSAGDPALKKIQNKRRKRGSVESKDHAPPP
RHGGE
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mRNA from alignment at H-paniculata_contig2221:5346..5691+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2221.5900.1 ID=mRNA_H-paniculata_contig2221.5900.1|Name=mRNA_H-paniculata_contig2221.5900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=346bp|location=Sequence derived from alignment at H-paniculata_contig2221:5346..5691+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCACTTACGCGGTGTGGGTAGGATAGAGGATGGATTTCTCAAACGATG
GCATGAATGTGGTGGTGCCTCGCCGTTGCAATATGACCGCAAGTAACGGC
AGCGGCAATCAAATGGGCTCGACTAACAGCGAATACATAATCACAATTTC
GCAAAACAATGTTGCCCCTGTCTCGATCAAAAGTCCGAACAGAGGCGCTT
CGACTGCGCCAGGCTCTCACCAGCAGACGTCTTCTTCTGCATCTTCTGCT
GGTGACCCAGCTCTGAAAAAAATACAGAATAAGCGCAGGAAGAGAGGTAG
TGTCGAAAGTAAAGATCATGCACCACCACCACGACATGGTGGCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2221:5346..5691+

>mRNA_H-paniculata_contig2221.5900.1 ID=mRNA_H-paniculata_contig2221.5900.1|Name=mRNA_H-paniculata_contig2221.5900.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig2221:5346..5691+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTTCTCAAACGATGGCATGAATGTGGTGGTGCCTCGCCGTTGCAA
TATGACCGCAAGTAACGGCAGCGGCAATCAAATGGGCTCGACTAACAGCG
AATACATAATCACAATTTCGCAAAACAATGTTGCCCCTGTCTCGATCAAA
AGTCCGAACAGAGGCGCTTCGACTGCGCCAGGCTCTCACCAGCAGACGTC
TTCTTCTGCATCTTCTGCTGGTGACCCAGCTCTGAAAAAAATACAGAATA
AGCGCAGGAAGAGAGGTAGTGTCGAAAGTAAAGATCATGCACCACCACCA
CGACATGGTGGCGAAATGGATTTCTCAAACGATGGCATGAATGTGGTGGT
GCCTCGCCGTTGCAATATGACCGCAAGTAACGGCAGCGGCAATCAAATGG
GCTCGACTAACAGCGAATACATAATCACAATTTCGCAAAACAATGTTGCC
CCTGTCTCGATCAAAAGTCCGAACAGAGGCGCTTCGACTGCGCCAGGCTC
TCACCAGCAGACGTCTTCTTCTGCATCTTCTGCTGGTGACCCAGCTCTGA
AAAAAATACAGAATAAGCGCAGGAAGAGAGGTAGTGTCGAAAGTAAAGAT
CATGCACCACCACCACGACATGGTGGCGAA
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