mRNA_H-paniculata_contig2221.5902.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2221.5902.1
Unique NamemRNA_H-paniculata_contig2221.5902.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2221.5902.1 vs. uniprot
Match: A0A6H5KPL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPL7_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.000e-12
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:  154 KDAPMTGLQTLQEYLCMDGNDSLQCSRRTVMTTLTRALLGTWEGSVNV 297
            K   +TGLQTLQEYLCM+G D++ C RRTV+ TLTRALLG+WEGS  +
Sbjct:   13 KAPKVTGLQTLQEYLCMNGRDTVDCGRRTVVATLTRALLGSWEGSATM 60
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BLAST of mRNA_H-paniculata_contig2221.5902.1 vs. uniprot
Match: D7FLH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLH9_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.120e-10
Identity = 31/51 (60.78%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:  202 MDGNDSLQCSRRTVMTTLTRALLGTWEGSVNVGRKLFDQCVLRQKDNSDAV 354
            M+G D++ C RRTV+ TLTRALL +WEGS  VGR+LFDQ VL+  D S  V
Sbjct:    1 MNGRDTVDCGRRTVVATLTRALLRSWEGSTTVGRELFDQSVLKTPDRSGPV 51
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2221.5902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPL7_9PHAE2.000e-1266.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLH9_ECTSI1.120e-1060.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2221contigH-paniculata_contig2221:7060..8171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size358
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2221.5902.1prot_H-paniculata_contig2221.5902.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2221 7060..8169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.3154116-CDS-H-paniculata_contig2221:7059..72151622929614.3154116-CDS-H-paniculata_contig2221:7059..7215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 7060..7215 +
1691480936.0634675-CDS-H-paniculata_contig2221:7059..72151691480936.0634675-CDS-H-paniculata_contig2221:7059..7215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 7060..7215 +
1622929614.3337805-CDS-H-paniculata_contig2221:7532..76731622929614.3337805-CDS-H-paniculata_contig2221:7532..7673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 7533..7673 +
1691480936.0718963-CDS-H-paniculata_contig2221:7532..76731691480936.0718963-CDS-H-paniculata_contig2221:7532..7673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 7533..7673 +
1622929614.3500316-CDS-H-paniculata_contig2221:8112..81691622929614.3500316-CDS-H-paniculata_contig2221:8112..8169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 8113..8169 +
1691480936.0797904-CDS-H-paniculata_contig2221:8112..81691691480936.0797904-CDS-H-paniculata_contig2221:8112..8169Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 8113..8169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2221.5902.1

>prot_H-paniculata_contig2221.5902.1 ID=prot_H-paniculata_contig2221.5902.1|Name=mRNA_H-paniculata_contig2221.5902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
DLEKFVICGSFYTAIQKLAKESPPMRHRGHTWKTHKERQTESFLTPALSV
HKDAPMTGLQTLQEYLCMDGNDSLQCSRRTVMTTLTRALLGTWEGSVNVG
RKLFDQCVLRQKDNSDAV
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mRNA from alignment at H-paniculata_contig2221:7060..8171+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2221.5902.1 ID=mRNA_H-paniculata_contig2221.5902.1|Name=mRNA_H-paniculata_contig2221.5902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1112bp|location=Sequence derived from alignment at H-paniculata_contig2221:7060..8171+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTCGAGAAGTTTGTCATCTGTGGAAGTTTCTACACAGCCATCCAAAA
ATTGGCCAAGGAATCGCCCCCCATGCGACATCGAGGCCACACCTGGAAGA
CTCACAAGGAAAGACAGACGGAGAGTTTTCTTACACCAGCTTTATCTGTT
CACAAGGTGACCGTGCGCTAGGCAAACTGCACTGGGAGTCACATGACTGT
TCCCGTTGTGGTTTGGTCCCTCGCCAGAGGCAACTCGCCCACTCTTCAGC
TAGACGGTGTTTGTAGTCGCGATATTTACGCCGCATGTACTGGCACTGGA
CTATCGGCAAACCCATGTTGGTAGCGCTCGTTCACACCAAGTTGAAATTT
TACTCCAAAACATGGGAACATGTGACTATTTTATGTATGAAAGAAAAAGG
CATAGCAGAACACATTTGTCCGGCGTAAATACGCCCCATGTTTCGACATG
CTCTCGCATCTCGTTTGCCATAGGATGCACCGATGACGGGACTCCAGACG
CTGCAGGAATACCTGTGCATGGATGGCAATGACTCGCTTCAATGCAGCCG
GCGCACCGTCATGACTACTCTTACCAGAGCTCTACTCGGTACTTGGGAGG
GGTCCGTCAACGTGGTACGGTAACATCAGATGTAGCAAGGAGGGGGTTCA
GTGTAGCGGGGTAGGATGGGCACGTGCATGTTATATCGTGACACTGTTAA
TAACGGTTCACACGTTTTAGACTTGAGAATAACGGAAGGCACAAGGTACA
GGTTCTAATCTTCAGGTCTATCGACACACCAAGCGCCGAATCCTCACTTT
GCCCGGTTACTAATACAAACCCAACAAGTACATTCACGGGAGTTCAGATA
TTCGAGTCTTGCCAATGATATCCAGGGCGAACTGCTTACCGCCCAACCAA
CCCTTTTGTAGCCCGCCCACTCAGATAAATCCTAGTCACGGAGAAATTGA
GACCTGCGAAGCAAGTCGACACGTTCGTATTCGGGCAGGTACATCATGAT
GGCCAATATGCGCCGCCTGAAGCTGCTACATTACTGCATTTCTTCAATCG
CAGGGGAGGAAGTTGTTTGACCAGTGCGTACTTAGACAGAAGGACAACTC
TGATGCCGTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2221:7060..8171+

>mRNA_H-paniculata_contig2221.5902.1 ID=mRNA_H-paniculata_contig2221.5902.1|Name=mRNA_H-paniculata_contig2221.5902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig2221:7060..8171+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCTCGAGAAGTTTGTCATCTGTGGAAGTTTCTACACAGCCATCCAAAA
ATTGGCCAAGGAATCGCCCCCCATGCGACATCGAGGCCACACCTGGAAGA
CTCACAAGGAAAGACAGACGGAGAGTTTTCTTACACCAGCTTTATCTGTT
CACAAGGACCTCGAGAAGTTTGTCATCTGTGGAAGTTTCTACACAGCCAT
CCAAAAATTGGCCAAGGAATCGCCCCCCATGCGACATCGAGGCCACACCT
GGAAGACTCACAAGGAAAGACAGACGGAGAGTTTTCTTACACCAGCTTTA
TCTGTTCACAAGGATGCACCGATGACGGGACTCCAGACGCTGCAGGAATA
CCTGTGCATGGATGGCAATGACTCGCTTCAATGCAGCCGGCGCACCGTCA
TGACTACTCTTACCAGAGCTCTACTCGGTACTTGGGAGGGGTCCGTCAAC
GTGGATGCACCGATGACGGGACTCCAGACGCTGCAGGAATACCTGTGCAT
GGATGGCAATGACTCGCTTCAATGCAGCCGGCGCACCGTCATGACTACTC
TTACCAGAGCTCTACTCGGTACTTGGGAGGGGTCCGTCAACGTGGGGAGG
AAGTTGTTTGACCAGTGCGTACTTAGACAGAAGGACAACTCTGATGCCGT
CGGGAGGAAGTTGTTTGACCAGTGCGTACTTAGACAGAAGGACAACTCTG
ATGCCGTC
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