mRNA_H-paniculata_contig2221.5901.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2221.5901.1
Unique NamemRNA_H-paniculata_contig2221.5901.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2221.5901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2221contigH-paniculata_contig2221:5713..7102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size284
Cds size282
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2221.5901.1prot_H-paniculata_contig2221.5901.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2221 5713..7101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929614.239094-CDS-H-paniculata_contig2221:5712..58351622929614.239094-CDS-H-paniculata_contig2221:5712..5835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 5713..5835 +
1691480936.034912-CDS-H-paniculata_contig2221:5712..58351691480936.034912-CDS-H-paniculata_contig2221:5712..5835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 5713..5835 +
1622929614.2540717-CDS-H-paniculata_contig2221:6388..65051622929614.2540717-CDS-H-paniculata_contig2221:6388..6505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 6389..6505 +
1691480936.0446053-CDS-H-paniculata_contig2221:6388..65051691480936.0446053-CDS-H-paniculata_contig2221:6388..6505Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 6389..6505 +
1622929614.264992-CDS-H-paniculata_contig2221:7059..71011622929614.264992-CDS-H-paniculata_contig2221:7059..7101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 7060..7101 +
1691480936.0554814-CDS-H-paniculata_contig2221:7059..71011691480936.0554814-CDS-H-paniculata_contig2221:7059..7101Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2221 7060..7101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2221.5901.1

>prot_H-paniculata_contig2221.5901.1 ID=prot_H-paniculata_contig2221.5901.1|Name=mRNA_H-paniculata_contig2221.5901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
KNFLNEAAKISNEELSVGGERPLLQRFRNLITSTRATGLIKEASPSFLGD
LMAQLTQLLPEVLESPDYASMFIGCMVPFEDLEKFVICGSFYTA
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mRNA from alignment at H-paniculata_contig2221:5713..7102+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2221.5901.1 ID=mRNA_H-paniculata_contig2221.5901.1|Name=mRNA_H-paniculata_contig2221.5901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1390bp|location=Sequence derived from alignment at H-paniculata_contig2221:5713..7102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAACTTCCTCAACGAAGCAGCTAAAATTTCAAACGAAGAACTCAGTGT
TGGTGGCGAGCGCCCGTTGTTGCAGAGGTTCCGCAACTTGATCACATCTA
CACGGGCCACGGGGCTCATCAAGGTAGGGTCAGAAAATTCTTCTTGTGCC
ACCCCCCCCCCTCTCTCTCCGCTTGTATTGTACATTCTGCCTTCAATTCC
ACCTACCTACAACATTATTTTGCGGAGTGGCTTTCATCGGTCTATCGACC
TTTCACTGCTGTGTGAAAATCAAAGCGAATCAATGGTTCTTGACATTGGT
GGTAGCAGTTTGTCATCCATAAGTCTTGCATCCTTACTTTACGCTCTTTC
TGTGATACATCGTTTTCTCACTTCATCCTTCATGATGCAGTGCGCATCAG
CGCATCAATACGTGGCGCAAAGTTGCTCATTGCCAACTGTAAGTATGTTG
GGGCCGTTTTCGCCCGTAGCGTGTTCGAGCTTTAGCAACAAGCTCGCTCT
CCACGCCCCCACGTTGGGATGTATGGTCGTTCGTTGGATGAAGCCGTTGT
GTGTGTTGTGAAGTTACAGTTCATAGCCTCTACATTTCCCGCACACAGCG
CCTGTGGGTGCCACCATCTCGTATCCCGTCCCGACGTAAGTTATCGTTGG
ACGACTAATTTACCTGAATTGAACAGGAAGCCTCACCATCTTTCCTCGGG
GATTTGATGGCCCAGCTGACGCAGCTGCTGCCAGAGGTCCTGGAATCGCC
TGACTACGCGTCAATGTTTATCGGTTGTATGGTCCCTTTCGAGGTAGGCG
CATTCGTACCTTTCGGGCGGGCACAGCAGTCCAGGGTTTCCGCGTTCGCT
CACGGTGTTGTGCTTGTTTTGGCGTTGTCAAACGTTAAGTTAGGACGAGT
GTCTGCCTTTCACTTCCCGTCTTGGGGCGCGAATTTTATTCCAAGAATGG
TTGGAATCCGCTGCACCAGGTCCATCGACGGACAGAGAGAGGAGACTGTG
TACGTCAGCTTTCTCTTGATGAGCACGAAGCCATCAGCTATCGATCAGCG
TTTGAATCTTGCCAAAAAGTGAGGGTGGCGCGAGATGTGTCACCCCCATA
CTTCAGTAAGCGCCAGTTTTTAATCTCTCCATGAGTCGGACGCGTACGCA
CAGTACAGTGTATACTTCAAAGGGAGCACAGGGCAGTCAGCATTGTGTGC
TTTTGCTGCACACTTGTGTAATTGTTCACCACCTTCGCTATACCTTGGCC
TCTCTTCTCCACGGACATTTGGCGAACAGGCTACTGTTTCCTCTGAAAAT
TATCTTCGGATCCACTCAATTTTCGCCCCTTGGCAAATCATCTCCAGGAC
CTCGAGAAGTTTGTCATCTGTGGAAGTTTCTACACAGCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig2221:5713..7102+

>mRNA_H-paniculata_contig2221.5901.1 ID=mRNA_H-paniculata_contig2221.5901.1|Name=mRNA_H-paniculata_contig2221.5901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig2221:5713..7102+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAACTTCCTCAACGAAGCAGCTAAAATTTCAAACGAAGAACTCAGTGT
TGGTGGCGAGCGCCCGTTGTTGCAGAGGTTCCGCAACTTGATCACATCTA
CACGGGCCACGGGGCTCATCAAGAAAAACTTCCTCAACGAAGCAGCTAAA
ATTTCAAACGAAGAACTCAGTGTTGGTGGCGAGCGCCCGTTGTTGCAGAG
GTTCCGCAACTTGATCACATCTACACGGGCCACGGGGCTCATCAAGGAAG
CCTCACCATCTTTCCTCGGGGATTTGATGGCCCAGCTGACGCAGCTGCTG
CCAGAGGTCCTGGAATCGCCTGACTACGCGTCAATGTTTATCGGTTGTAT
GGTCCCTTTCGAGGAAGCCTCACCATCTTTCCTCGGGGATTTGATGGCCC
AGCTGACGCAGCTGCTGCCAGAGGTCCTGGAATCGCCTGACTACGCGTCA
ATGTTTATCGGTTGTATGGTCCCTTTCGAGGACCTCGAGAAGTTTGTCAT
CTGTGGAAGTTTCTACACAGCCGACCTCGAGAAGTTTGTCATCTGTGGAA
GTTTCTACACAGCC
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