mRNA_H-paniculata_contig22205.5898.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig22205.5898.1 vs. uniprot
Match: W8AXM4_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8AXM4_CERCA) HSP 1 Score: 102 bits (255), Expect = 1.190e-22 Identity = 64/171 (37.43%), Postives = 86/171 (50.29%), Query Frame = 1
Query: 1 WRAVMEEEWEALMENGRWESEDPGRLPAGRKAIRTKWIFRRNLKEDGSVACHKARLVAQRFSQVEGEDFFET---------IRSL------------HVDVTYCFQPGPT--------PQFSPSSRDIPFVRRLCKSMSGLKQSGRNWNNTLNDFLVQVGLDRSTTSSCLY 426
WR M+ E +ALM+NG WE D P G+ I +W+F DG++ HKARLVAQ Q EDFFET IR + H+DV + G PQ +++ + V +L KS+ GLKQ+GR+WNN ++ L Q+G R T SCLY
Sbjct: 712 WRNAMQTEHDALMKNGTWELVD---CPQGKNVIGCRWVFTTKYNSDGTIDKHKARLVAQGCGQRRFEDFFETYAPVARHSAIRLILALGAKHKLLINHIDVVAAYLHGELADDIYMRQPQMFVNTKFLERVCKLKKSIYGLKQAGRDWNNKIDVILSQIGFTRCKTDSCLY 879
BLAST of mRNA_H-paniculata_contig22205.5898.1 vs. uniprot
Match: A0A182GDL1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDL1_AEDAL) HSP 1 Score: 94.0 bits (232), Expect = 1.900e-20 Identity = 61/171 (35.67%), Postives = 88/171 (51.46%), Query Frame = 1
Query: 1 WRAVMEEEWEALMENGRWESEDPGRLPAGRKAIRTKWIFRRNLKEDGSVACHKARLVAQRFSQVEGEDFFE---------TIRSL------------HVDVTYCFQPGPTPQFSPSSRDIPFVRR--------LCKSMSGLKQSGRNWNNTLNDFLVQVGLDRSTTSSCLY 426
W+A M+EE+++LMENG W + LPAGRKAI +KW+F++ G+V KARLVAQ FSQ G D+ T+R+L H+DV + G + + FVRR L +S+ GLKQ + WN+T+ L ++G +S CL+
Sbjct: 24 WKAAMQEEYDSLMENGTWVLAE---LPAGRKAIGSKWVFKKKEDSAGNVCKFKARLVAQGFSQQFGVDYDSVFAPVAAQTTLRTLLSVAGKKKMKVRHLDVKSAYLHGQLKEELYMQQPKGFVRRGEEKLVCRLQRSLYGLKQGAKVWNDTICAILGEIGFHQSRADPCLF 191
BLAST of mRNA_H-paniculata_contig22205.5898.1 vs. uniprot
Match: Q45W64_PHACR (Polyprotein n=1 Tax=Phanerochaete chrysosporium (strain RP-78 / ATCC MYA-4764 / FGSC 9002) TaxID=273507 RepID=Q45W64_PHACR) HSP 1 Score: 96.3 bits (238), Expect = 2.340e-20 Identity = 63/174 (36.21%), Postives = 87/174 (50.00%), Query Frame = 1
Query: 1 WRAVMEEEWEALMENGRWESEDPGRLPAGRKAIRTKWIFRRNLKEDGSVACHKARLVAQRFSQVEGEDFFET---------------------IRSLHVDVTYCFQPGP---------TPQFSPSSRDIPFVRRLCKSMSGLKQSGRNWNNTLNDFLVQV-GLDRSTTSSCLYF 429
W+A M+ E L NG W+ G LP GRKAI +KW+F +DGS+ +KARLVAQ FSQ+ G+D+F+T + S +D+ + GP P + S + +V L K++ GLKQ+GR WN+ LN L + G RS CLYF
Sbjct: 847 WKAAMDAEMAQLEANGTWKK---GELPPGRKAIGSKWVFAIKRHQDGSIDKYKARLVAQGFSQIAGQDYFDTFSPVVRQETFRVATALAATENLDSDALDIVGAYLHGPLEEEIYMRQAPGYDDGSGQV-YV--LIKALYGLKQAGRVWNHLLNHVLTSLMGWTRSEADPCLYF 1014
BLAST of mRNA_H-paniculata_contig22205.5898.1 vs. uniprot
Match: Q8WRX5_ANOGA (Pol polyprotein (Fragment) n=2 Tax=Anopheles gambiae TaxID=7165 RepID=Q8WRX5_ANOGA) HSP 1 Score: 94.4 bits (233), Expect = 1.070e-19 Identity = 60/170 (35.29%), Postives = 85/170 (50.00%), Query Frame = 1
Query: 1 WRAVMEEEWEALMENGRWESEDPGRLPAGRKAIRTKWIFRRNLKEDGSVACHKARLVAQRFSQVEGEDF------------FETIRSL---------HVDVTYCFQPGPTPQF----SPSSRDIPFVRRLC---KSMSGLKQSGRNWNNTLNDFLVQVGLDRSTTSSCLY 426
W+ MEEE ++L EN WE LP RKA+ +KW+F+R + DG + +KARLVA+ FSQV G D+ F T+ S+ HVDV + G + P+ +I +C KS+ GLKQ+GR WN T+ + L +G S CL+
Sbjct: 444 WKRAMEEEIKSLHENATWEIAS---LPKDRKAVGSKWVFKRKMDGDGKIVQYKARLVAKGFSQVYGADYDEVFAPVAKQTTFRTLLSIAARRKLIVKHVDVKSAYLYGDLAETIYMKQPTGFEIGSKNDVCLLKKSLYGLKQAGRVWNQTITEVLRSLGFHSSEADPCLF 610
BLAST of mRNA_H-paniculata_contig22205.5898.1 vs. uniprot
Match: A0A4Z0ABW0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Z0ABW0_9AGAM) HSP 1 Score: 94.0 bits (232), Expect = 1.490e-19 Identity = 61/172 (35.47%), Postives = 87/172 (50.58%), Query Frame = 1
Query: 1 WRAVMEEEWEALMENGRWESEDPGRLPAGRKAIRTKWIFRRNLKEDGSVACHKARLVAQRFSQVEGEDF---------FETIRSL------------HVDVTYCFQPGPT--------PQFSPSSRDIPFVRRLCKSMSGLKQSGRNWNNTLNDFLVQVGLDRSTTSSCLYF 429
W + M+EE++ L++ G WE RLPAG KAI ++W ++ DG+ ++ARLVAQ FSQ G DF FE+ R + VDV + G P+ S +I V RL KS+ GLKQSGR WN L+ L+ +G +S + C+Y+
Sbjct: 1009 WESAMQEEYDVLLKTGTWEKV---RLPAGCKAIGSRWTYKVKHDADGNPVRYRARLVAQGFSQRPGVDFNETHSPVARFESFRLVFALVARFGWLFEQVDVKSAYLNGTLDEEIFMHQPEGFISPDEIDLVLRLLKSIYGLKQSGRVWNKVLDGELLNIGFKQSNSDPCVYY 1177
BLAST of mRNA_H-paniculata_contig22205.5898.1 vs. uniprot
Match: A0A5S6QBM2_TRIMR (Integrase catalytic domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QBM2_TRIMR) HSP 1 Score: 92.0 bits (227), Expect = 6.780e-19 Identity = 64/172 (37.21%), Postives = 83/172 (48.26%), Query Frame = 1
Query: 1 WRAVMEEEWEALMENGRWESEDPGRLPAGRKAIRTKWIFRRNLKEDGSVACHKARLVAQRFSQVEGEDFFET------------------IRSLHV---DVTYCFQPGPT---------PQFSPSSRDIPFVRRLCKSMSGLKQSGRNWNNTLNDFLVQVGLDRSTTSSCLY 426
W A +EE +L WE +LPAGRK I +KW+F+ K DG++ +KARLVA+ FSQ GED+ ET +RSLHV DV + G P F S + V RL +S+ GLKQS R WN + L +G DR+ CLY
Sbjct: 358 WIAAAKEEMASLKNRDVWELV---KLPAGRKVISSKWVFKIKRKADGAIDTYKARLVARGFSQRYGEDYDETFAPVVKHETIRMLLSIAAMRSLHVRHFDVKCAYLNGEIHEELYMEQPPGFVQSGNEN-LVLRLKRSIYGLKQSARAWNKKATEVLTSLGFDRANADLCLY 525
BLAST of mRNA_H-paniculata_contig22205.5898.1 vs. uniprot
Match: A0A2I0L3M3_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0L3M3_PUNGR) HSP 1 Score: 91.3 bits (225), Expect = 1.090e-18 Identity = 58/142 (40.85%), Postives = 83/142 (58.45%), Query Frame = 1
Query: 1 WRAVMEEEWEALMENGRWESEDPGRLPAGRKAIRTKWIFRRNLKEDGSVACHKARLVAQRFSQVEGEDFFETIRSLHVDVTYCFQPGPTPQFSPSSRDIPFVRRLCKSMSGLKQSGRNWNNTLNDFLVQVGLDRSTTSSCLY 426
WRA MEEE+ AL++N W+ P PA + + KW++R K DG++ +KARLVA+ F+Q EG D+ ET SL + + Y QP P F +SR +V RL +S+ GLKQ+ R W LN +L ++G S L+
Sbjct: 251 WRAAMEEEYLALLQNHTWDLVPPS--PA-QNVVGCKWVYRIKQKADGTIDHYKARLVAKGFNQREGVDYSETF-SLVIKLVYMSQP---PGFLDASRPN-YVCRLRRSLYGLKQAPRAWFQHLNTYLQRLGFSDSKLDPSLF 384
BLAST of mRNA_H-paniculata_contig22205.5898.1 vs. uniprot
Match: A0A182GGE6_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GGE6_AEDAL) HSP 1 Score: 90.9 bits (224), Expect = 1.770e-18 Identity = 60/169 (35.50%), Postives = 83/169 (49.11%), Query Frame = 1
Query: 1 WRAVMEEEWEALMENGRWESEDPGRLPAGRKAIRTKWIFRRNLKEDGSVACHKARLVAQRFSQVEGEDFFET---------IRSL------------HVDVTYCFQPGPTPQFSPSSRDIPFVR------RLCKSMSGLKQSGRNWNNTLNDFLVQVGLDRSTTSSCLY 426
W+ M+EE ++L NG W +LPAGR AI KWIF+ EDG +KARLVA+ FSQ G D+ ET +R++ +DV F G + + F R RL +S+ GLKQ+ R WN N+F+ ++G +RS CLY
Sbjct: 668 WQQAMKEEMDSLERNGTWTLT---KLPAGRSAISCKWIFKIKPGEDGQPTRYKARLVARGFSQKRGFDYSETYSPVARLDTLRTVLAMANREGMVVHKMDVKTVFLNGELTEEIYMEQPEGFTRKENLVCRLKRSLYGLKQASRQWNECFNEFVKRLGFERSVNDPCLY 833
BLAST of mRNA_H-paniculata_contig22205.5898.1 vs. uniprot
Match: A0A182H8E6_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H8E6_AEDAL) HSP 1 Score: 90.5 bits (223), Expect = 1.810e-18 Identity = 61/172 (35.47%), Postives = 83/172 (48.26%), Query Frame = 1
Query: 1 WRAVMEEEWEALMENGRWESEDPGRLPAGRKAIRTKWIFRRNLKEDGSVACHKARLVAQRFSQVEGEDFFE---------TIRSL------------HVDVTYCFQPGPT---------PQFSPSSRDIPFVRRLCKSMSGLKQSGRNWNNTLNDFLVQVGLDRSTTSSCLY 426
WRA M E ++ ENG WE + LPAGRK + +W+F+ G V HKARLVAQ FSQ GED+ E T+R L H D+ + G P ++ ++ V L +S+ GLKQS R WN L+ LV++G +S+ CLY
Sbjct: 289 WRAAMASELKSHAENGTWELAE---LPAGRKVVGCRWVFKLKRNAAGEVIKHKARLVAQGFSQQFGEDYDEVFAPVTSHTTLRMLLALASKKKMTLKHFDIKTAYLYGELDQDLFMRQPPGYAEKGKEH-LVCHLKRSIYGLKQSARCWNQKLHGVLVKMGFKQSSVDQCLY 456
BLAST of mRNA_H-paniculata_contig22205.5898.1 vs. uniprot
Match: A0A182G6D5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G6D5_AEDAL) HSP 1 Score: 88.6 bits (218), Expect = 3.140e-18 Identity = 58/171 (33.92%), Postives = 84/171 (49.12%), Query Frame = 1
Query: 1 WRAVMEEEWEALMENGRWESEDPGRLPAGRKAIRTKWIFRRNLKEDGSVACHKARLVAQRFSQVEGEDFF---------ETIRSL------------HVDVTYCFQPGPTPQFSPSSRDIPFVR--------RLCKSMSGLKQSGRNWNNTLNDFLVQVGLDRSTTSSCLY 426
W+ M+EE+++LM+NG W+ + LPAGR I KW+F+R G V KARLVAQ FSQ G D+ T+R L H+DV + G + + FV+ +L +S+ GLKQ+ + WN T+N L ++G +S CLY
Sbjct: 111 WKVAMKEEYDSLMQNGTWKLVE---LPAGRDPIGCKWVFKRKEDSVGKVTRFKARLVAQGFSQRPGVDYDAVFAPVASQNTLRVLFTVAGHKRMNVRHIDVKSAYLHGRLQEDIYMEQPRGFVQPGKEKLVCKLERSLYGLKQAAKVWNETINGILKELGFQQSHADPCLY 278 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig22205.5898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig22205.5898.1 >prot_H-paniculata_contig22205.5898.1 ID=prot_H-paniculata_contig22205.5898.1|Name=mRNA_H-paniculata_contig22205.5898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp MEEEWEALMENGRWESEDPGRLPAGRKAIRTKWIFRRNLKEDGSVACHKAback to top mRNA from alignment at H-paniculata_contig22205:3085..3597+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig22205.5898.1 ID=mRNA_H-paniculata_contig22205.5898.1|Name=mRNA_H-paniculata_contig22205.5898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=513bp|location=Sequence derived from alignment at H-paniculata_contig22205:3085..3597+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig22205:3085..3597+ >mRNA_H-paniculata_contig22205.5898.1 ID=mRNA_H-paniculata_contig22205.5898.1|Name=mRNA_H-paniculata_contig22205.5898.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig22205:3085..3597+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |