mRNA_H-paniculata_contig2220.5895.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2220.5895.1
Unique NamemRNA_H-paniculata_contig2220.5895.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: D8LJZ1_ECTSI (Oxa1 or Cox18/Oxa2 homolog, mitochondrial integral inner membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJZ1_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 5.200e-63
Identity = 125/310 (40.32%), Postives = 186/310 (60.00%), Query Frame = 3
Query:  519 AVDGVTSAAXSAAGTAQQAQPMIEASVPSAVELGLY-PVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIP-VVPKEPPPGADGKELTWMAVLGAPNPFKAHKMMLDQQAANSHSIVGGG 1442
            A+ G   AA +AAGTA QAQ  +E + P   ++ LY P ++AM  +D + +TTGMPYW +IV ITV +R+A+LP+ ++  RN AR   MKPE D L+ A++ D  +   RK  RYR E+KALFQK+   L      P+VQ+P F+ F+  LRRM +  P +A+GG  WFQDLGA DPY + P ++ +  + M E G +G      S  ++  MRG+ LL+ P+T+ +  G F+YW TSN +S++Q++  K    +K F  P + P +       KE+ W+ VLG  +P K ++ M DQ+   +  + G G
Sbjct:   23 AMAGGADAAMAAAGTADQAQAALEVA-PETFKMALYTPPQVAMMAVDYVHATTGMPYWMTIVAITVGIRTAILPIGLLAARNGARTAAMKPEMDELQAAIKGDQQSSQPRKADRYRQETKALFQKHKASLVMNAALPIVQLPLFIGFFLGLRRMPDVVPEFATGGVLWFQDLGAPDPYMIFPVMTGVMMMAMAELGGEGGALAGSSVKMKAGMRGMALLVTPLTMYVSTGVFVYWTTSNFYSILQTLAFKSSGIKKFFDFPDLPPNKLKSNTAEKEIGWLDVLGGDHPIKEYRKMQDQREVQAWFVEGEG 331          
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A6H5J862_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J862_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 2.440e-61
Identity = 124/310 (40.00%), Postives = 187/310 (60.32%), Query Frame = 3
Query:  519 AVDGVTSAAXSAAGTAQQAQPMIEASVPSAVELGLY-PVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIP-VVPKEPPPGADGKELTWMAVLGAPNPFKAHKMMLDQQAANSHSIVGGG 1442
            A+ G   AA +AAGTA+QAQ  ++ + P   ++ LY P ++AM  +D + +TTGMPYW +I+ ITV +R+A+LP+ ++  RN AR   MKPE DAL+ A++ D  +   RK  RYR E+KALFQK+   L      P+VQ+P F+ F+  LRRM +  P +A+GG  WFQDLGA DPY + P ++ +  + M E G +G      S  ++  MRG+ LL+ P+T+ +  G F+YW TSN +S++Q++  K    +K F  P + P +       KE+ W  VLG  +P K ++ M DQ+   +  + G G
Sbjct:  198 AMAGSADAAMAAAGTAEQAQATLDVA-PETFKMALYTPPQLAMMAVDYVHATTGMPYWMTIIAITVGIRTAILPIGLLAARNGARTAAMKPEMDALQAAIKGDQQSSQPRKADRYRQETKALFQKHKASLVMNAALPIVQLPLFIGFFLGLRRMPDVVPEFATGGVLWFQDLGAPDPYMIFPVMTGVMMMAMAELGGEGGALAGSSVKMKAGMRGMALLVTPLTMYVSTGVFVYWTTSNFYSILQTLAFKSSAIKKFFDFPDLPPNKLKRDTAEKEIGWFDVLGGDHPIKEYRKMQDQREVQAWFVEGEG 506          
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A7S2RKG9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKG9_9STRA)

HSP 1 Score: 182 bits (463), Expect = 1.940e-47
Identity = 98/255 (38.43%), Postives = 154/255 (60.39%), Query Frame = 3
Query:  552 AAGTAQQAQPMIEASVPSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPVVPKEP 1316
            AAG    A     A+V +A +LG +P  + MQ ID I +T+GMP+W +I+ +T+ LR AMLP+ + T +N+ RM  +KPE + + E ++ D  +   ++   Y  + +ALFQKYD    R  +   +Q+P FMSF+F L+ M + +P    GG  WF DL AADP  + P ++  SF+ M+E G+DGM++   +  ++  MRG+ LL++P T  +P   F YW  +N  S+ Q++ LK+P+ R  FG+P  P+ P
Sbjct:   32 AAGAGDSAAGGAAAAVDAAAQLGYWPSHMVMQGIDLIHTTSGMPFWMTIMAVTISLRVAMLPVLLSTIKNARRMTQLKPELEIISERIKADPKSNDPQRQQMYSKQLQALFQKYDAHPIRSFYGIGIQLPVFMSFFFGLKSMGDFYPEIQQGGTLWFTDLAAADPTFIFPVVTTASFIFMIELGADGMDANQQA-TMKNVMRGLGLLMLPFTYQMPCAVFCYWSAANFMSVCQTLALKVPSVRDYFGVPPPPQPP 285          
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A482SHT9_9ARCH (YidC/Oxa1 family membrane protein insertase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHT9_9ARCH)

HSP 1 Score: 181 bits (460), Expect = 3.990e-47
Identity = 100/253 (39.53%), Postives = 153/253 (60.47%), Query Frame = 3
Query:  624 YPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPVVPKEPPPGADGKELTWMAVLGAPNPFK 1382
            Y V   M+ ID + +  G+PYW +IV  TV LR  +LP+ + TT++SAR+ + +PE   ++EA+ +D  T  +R  L+Y+ E  A+  K+ V   R L +P+ Q P F++F+ ALR M   FP + +GG  WF +L A D +  LP  +++SFLLM+E G+DGM +   +   R  MRG+ + +VP+T ++P G F+YW+T+N FSLVQ+++LK  + RK+  IP +P E  P            L   NPFK
Sbjct:   90 YVVGTVMKFIDYVHTLAGVPYWEAIVFTTVGLRFLLLPVVLKTTQSSARLAVARPEMQKVQEAMAKDTNTADSRVQLKYQKEMSAVLSKHKVNPVRALLWPVCQFPIFIAFFMALRDMGTYFPGFLTGGDFWFTNLSAPDSFYYLPIANSVSFLLMIELGADGMPTQQQA-TFRWVMRGLAVALVPLTSSMPQGLFVYWVTNNVFSLVQTMILKQESVRKALDIPKIPTENTPN-----------LKVVNPFK 330          
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A067C4W9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C4W9_SAPPC)

HSP 1 Score: 174 bits (441), Expect = 1.530e-44
Identity = 90/235 (38.30%), Postives = 144/235 (61.28%), Query Frame = 3
Query:  600 PSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPVV 1304
            P+  E+G    EIA++V+D    TTG+P+WA+I+  TV +RS   P++V++ RNSARM +MKP+ + L+E ++        +K   +RA +K LF++++V+       PL Q+P F+ F++ L+ +S   P YA  G  WFQDL A DP   LP +S+   +  +E G DG+    +S   ++ MR V L++VP+     +G  +YW+TSN F+L Q+++LK+P  R + GIP V
Sbjct:   79 PATAEMGYSLAEIAVRVLDVAHVTTGLPWWATIIATTVAVRSVFFPISVMSMRNSARMNIMKPKLEKLQEEIKSSQEAYDPKKMAEFRARAKNLFKEHEVRPFMSFLMPLSQLPIFLGFFWGLQEISTHIPEYAGEGTLWFQDLAAPDPLYALPVISSALMIASMEAGGDGLPKEYLS-QAKMGMRMVALIMVPVATTFQSGILVYWVTSNCFTLTQTMLLKVPAVRSALGIPSV 312          
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A024U946_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U946_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.380e-43
Identity = 92/265 (34.72%), Postives = 162/265 (61.13%), Query Frame = 3
Query:  591 ASVPSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPVVPKEPPPGADGKELTWMAVLGAPNPFKA 1385
            A  P  V++G    E+A++ +D + + +G+P+WA+I+  TV++RSA  P+++++ +NSARMG+++P+ + L+  ++         K   +RA ++ALF+++ V+       P+ Q+P F+ F++ L+ +S+  P YA+ GA WF++L A DP   LP +S+   +  LE G +GM    +    ++ MR V L+++P+ IN  +G  +YW+TSN F+L Q++VLK+P  + + GIP  P  PPP      L   +V   P+PF+A
Sbjct:   79 AVAPVTVDMGYSLAEMAIRTMDVVHAMSGLPWWATIIATTVIVRSAFFPISIMSMKNSARMGILQPKLEKLQNEIKNSPDAYDPAKMTEFRARAQALFKEHKVRPFMSFLMPISQLPIFLGFFWGLQDISKYIPGYATDGAFWFENLAAPDPTYALPVISSALMVASLEAGGEGMPPEYID-KAKMGMRAVALIMIPVAINFESGILLYWVTSNIFTLTQTLVLKIPGLKAALGIPS-PVAPPP------LMTASVSKFPSPFQA 335          
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A1V9ZCP9_9STRA (Mitochondrial inner membrane protein OXA1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCP9_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.330e-42
Identity = 87/233 (37.34%), Postives = 145/233 (62.23%), Query Frame = 3
Query:  600 PSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIP 1298
            P+  E+G    EIA++V+D + +TTG+P+WA+IV  TV +RS   P++V++ +NSARM +MKP+ D L+E +         +K   +RA ++ LF+++ V+       PL Q+P F+ F++ L+ +++  P YA+ G  WF++L   DP   LP LS+   +  +E G +GM    +S   ++ MR V L++VP+     +G  +YW+TSNTF+L Q+++LK+P  R + GIP
Sbjct:   83 PATAEMGYSLAEIAVRVLDVVHATTGLPWWATIVASTVAVRSMFFPISVMSMKNSARMNIMKPKLDKLQEEIRNAQDAHDPKKMAEFRARAQNLFKEHQVRPFLSFLMPLSQLPIFLGFFWGLQEITKFIPDYATDGTLWFENLAEPDPTYALPILSSALMIASMEAGGEGMPKEYLS-QAKMGMRLVALIMVPVATTFQSGVLVYWVTSNTFTLTQTLLLKVPAIRSALGIP 314          
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A1V9YQZ6_9STRA (Mitochondrial inner membrane protein OXA1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQZ6_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.430e-42
Identity = 91/247 (36.84%), Postives = 148/247 (59.92%), Query Frame = 3
Query:  600 PSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPA------------GTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPVV 1304
            P+  E+G    EIA++V+DG+  TTG+P+WA+I+  TV +RSA  P++V++ RNSARM +MKP+ + L++ +         +K   +RA ++ LF+++ V+       PL Q+P F+ F++ L+ +S   P+YAS GA WFQ+L + DP   LP LS+   +  +E G DG+    +S   ++ MR V L++VP+     +            G  +YW+TSN F+L Q+++LK+P  R + GIP V
Sbjct:   61 PATAEMGYSLAEIAIRVMDGVHMTTGLPWWATIIATTVAVRSAFFPISVMSMRNSARMNIMKPKLEKLQDEIRASQEAYDPKKMAEFRARAQNLFKEHQVRPFLSFLMPLSQLPIFLGFFWGLQEISTFIPSYASDGALWFQELASPDPLYALPVLSSALMIASMEAGGDGLPKEYVS-QAKMGMRMVALIMVPVATTFQSVAKASMELRALQGILVYWVTSNCFTLTQTMLLKVPAVRSALGIPSV 306          
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: W4FLF9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLF9_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.610e-42
Identity = 90/262 (34.35%), Postives = 160/262 (61.07%), Query Frame = 3
Query:  600 PSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPVVPKEPPPGADGKELTWMAVLGAPNPFKA 1385
            P   E+G    EIA++ +D + +T+G+P+WA+I+  T+++RSA  P+++++ RNSARMG+++P+   L++ ++         K   +RA ++ALF+++ V+       P+ Q+P F+ F++ L+ +++  P YA+ GA WF++L A DP   LP LS+   +  LE G +GM +  +    ++ MR V L+++P+ +N  +G  +YW++SN F+L Q++VLK+P  +K   IP  P  PPP      L    +   P+PF+A
Sbjct:   85 PVTAEMGYSLAEIAIRTLDVVHATSGLPWWATIIATTIVVRSAFFPISIMSMRNSARMGILQPKLQKLQDEIKSSPDAYDPAKMTEFRARAQALFKEHKVRPFMSFLMPISQLPIFLGFFWGLQDIAKYIPGYAADGAFWFENLAAPDPTYALPVLSSALMVASLEAGGEGMPAEYID-KAKMGMRIVALIMIPVAVNFESGILLYWVSSNIFTLTQTLVLKIPGVKKLLDIPT-PVTPPP------LATTNLSSFPSPFQA 338          
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Match: A0A6A3UNJ7_9STRA (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UNJ7_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.580e-40
Identity = 93/254 (36.61%), Postives = 154/254 (60.63%), Query Frame = 3
Query:  552 AAGTAQQAQPMIEAS----VPSAVELGLYPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARMGLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWFPLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSALSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWLTSNTFSLVQSVVLKMPTFRKSFGIPV 1301
            AA  A+ A   +EA+      S  +LG    ++A++ +D I STTG+P+WA+I+  TV +R+   P+ VV+ RN+A+M L +P+ + LK  ++  N T ++     ++ + KAL +K+ V   + +  P+ QIP F+ F++ L+ +S+ FP YA  G  W  DL AADPY VLP LS+   +  +E G D M +G M   ++  MR    ++VP+T+N  +G F+YW+TSN F++ QS +L++   +++  IPV
Sbjct:   71 AASPAEVADQALEAASTIDYASVSDLGFGLSDLAIRSLDVIHSTTGLPWWATIIATTVAVRTVFFPITVVSMRNAAKMKLFQPDMEKLKAEID-SNPTQNSETAQEFQKKYKALMKKHGVNPFKSVLTPMSQIPVFLGFFWGLQDISKYFPEYAHEGIGWVSDLSAADPYMVLPILSSALMIASVELGGDAM-AGEMKDKLKFGMRFFAAIMVPLTMNFQSGIFVYWVTSNAFTVAQSALLRVNLIKRALNIPV 322          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2220.5895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJZ1_ECTSI5.200e-6340.32Oxa1 or Cox18/Oxa2 homolog, mitochondrial integral... [more]
A0A6H5J862_9PHAE2.440e-6140.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2RKG9_9STRA1.940e-4738.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A482SHT9_9ARCH3.990e-4739.53YidC/Oxa1 family membrane protein insertase n=1 Ta... [more]
A0A067C4W9_SAPPC1.530e-4438.30Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A024U946_9STRA3.380e-4334.72Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9ZCP9_9STRA1.330e-4237.34Mitochondrial inner membrane protein OXA1 n=1 Tax=... [more]
A0A1V9YQZ6_9STRA1.430e-4236.84Mitochondrial inner membrane protein OXA1 n=1 Tax=... [more]
W4FLF9_9STRA1.610e-4234.35Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A6A3UNJ7_9STRA1.580e-4036.61Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2220contigH-paniculata_contig2220:9260..20201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.9
Seed ortholog evalue3.2e-42
Seed eggNOG ortholog112098.XP_008618881.1
KEGG koko:K03217
KEGG TC2.A.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.membrane insertase activity
EggNOG OGsCOG0706@1,KOG1239@2759
Ec32 ortholog descriptionOxa1 or Cox18/Oxa2 homolog, mitochondrial integral inner membrane protein
Ec32 orthologEc-06_007520.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044,ko03029
Exons6
Model size2435
Cds size1614
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2220.5895.1prot_H-paniculata_contig2220.5895.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2220 10058..20178 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.6738586-UTR-H-paniculata_contig2220:9259..100571622929613.6738586-UTR-H-paniculata_contig2220:9259..10057Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2220 9260..10057 -
1691480935.80358-UTR-H-paniculata_contig2220:9259..100571691480935.80358-UTR-H-paniculata_contig2220:9259..10057Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2220 9260..10057 -
1622929613.7900245-UTR-H-paniculata_contig2220:20178..202011622929613.7900245-UTR-H-paniculata_contig2220:20178..20201Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2220 20179..20201 -
1691480935.8688142-UTR-H-paniculata_contig2220:20178..202011691480935.8688142-UTR-H-paniculata_contig2220:20178..20201Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2220 20179..20201 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929613.6915197-CDS-H-paniculata_contig2220:10057..101831622929613.6915197-CDS-H-paniculata_contig2220:10057..10183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 10058..10183 -
1691480935.8158054-CDS-H-paniculata_contig2220:10057..101831691480935.8158054-CDS-H-paniculata_contig2220:10057..10183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 10058..10183 -
1622929613.712291-CDS-H-paniculata_contig2220:10553..107991622929613.712291-CDS-H-paniculata_contig2220:10553..10799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 10554..10799 -
1691480935.8233943-CDS-H-paniculata_contig2220:10553..107991691480935.8233943-CDS-H-paniculata_contig2220:10553..10799Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 10554..10799 -
1622929613.7287555-CDS-H-paniculata_contig2220:11336..115761622929613.7287555-CDS-H-paniculata_contig2220:11336..11576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 11337..11576 -
1691480935.8312526-CDS-H-paniculata_contig2220:11336..115761691480935.8312526-CDS-H-paniculata_contig2220:11336..11576Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 11337..11576 -
1622929613.7457707-CDS-H-paniculata_contig2220:12921..131281622929613.7457707-CDS-H-paniculata_contig2220:12921..13128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 12922..13128 -
1691480935.8405755-CDS-H-paniculata_contig2220:12921..131281691480935.8405755-CDS-H-paniculata_contig2220:12921..13128Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 12922..13128 -
1622929613.7651522-CDS-H-paniculata_contig2220:13727..139731622929613.7651522-CDS-H-paniculata_contig2220:13727..13973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 13728..13973 -
1691480935.8498602-CDS-H-paniculata_contig2220:13727..139731691480935.8498602-CDS-H-paniculata_contig2220:13727..13973Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 13728..13973 -
1622929613.7790434-CDS-H-paniculata_contig2220:19629..201781622929613.7790434-CDS-H-paniculata_contig2220:19629..20178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 19630..20178 -
1691480935.859362-CDS-H-paniculata_contig2220:19629..201781691480935.859362-CDS-H-paniculata_contig2220:19629..20178Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2220 19630..20178 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2220.5895.1

>prot_H-paniculata_contig2220.5895.1 ID=prot_H-paniculata_contig2220.5895.1|Name=mRNA_H-paniculata_contig2220.5895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=538bp
MLRAGQSSAARAVFYRAGAAHEGRSARFSVFARASSATRHSVPNNFNNAS
CGSSGSRPGRVGDLSVSNSRLGGRRVAVIAQRIRAVATTAGGRLAGGGAY
PLSCTPLNSSLPCAGFAYWRCAAFRSRGMSASASSAGGQATGSGGTGAAA
AAAAGGSTSSSGGSVAVDGVTSAASSAAGTAQQAQPMIEASVPSAVELGL
YPVEIAMQVIDGIASTTGMPYWASIVLITVMLRSAMLPLAVVTTRNSARM
GLMKPEQDALKEALERDNVTPSNRKHLRYRAESKALFQKYDVKLSRGLWF
PLVQIPFFMSFWFALRRMSEQFPAYASGGAAWFQDLGAADPYAVLPTLSA
LSFLLMLEKGSDGMNSGMMSPNIRLAMRGVTLLIVPITINLPAGTFMYWL
TSNTFSLVQSVVLKMPTFRKSFGIPVVPKEPPPGADGKELTWMAVLGAPN
PFKAHKMMLDQQAANSHSIVGGGDLGPVPKNAPLPPPPPVTRDMEAPKLK
TAAASGSMGKGGVVGQSSKPRKGGGNDFKRKKGKQRA*
back to top

mRNA from alignment at H-paniculata_contig2220:9260..20201-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2220.5895.1 ID=mRNA_H-paniculata_contig2220.5895.1|Name=mRNA_H-paniculata_contig2220.5895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10942bp|location=Sequence derived from alignment at H-paniculata_contig2220:9260..20201- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCCTCTTCTGTCATAGAAGCAATGCTTCGAGCTGGGCAATCCTCAGCC GCACGCGCCGTATTCTACCGAGCAGGGGCAGCGCATGAGGGGAGAAGTGC AAGGTTTTCAGTATTTGCTCGCGCTTCTTCTGCTACTCGTCATTCTGTCC CCAACAATTTCAACAATGCATCATGCGGTAGCAGTGGCTCGCGGCCGGGT AGAGTTGGCGACCTTTCAGTGAGCAACAGTAGGCTTGGAGGACGGAGAGT CGCCGTGATTGCGCAGCGAATAAGGGCGGTAGCAACAACAGCGGGAGGGA GGTTAGCAGGAGGGGGTGCTTACCCACTGTCCTGTACACCATTAAATTCG TCCTTGCCATGTGCTGGCTTTGCGTATTGGAGATGTGCAGCCTTTCGATC TCGAGGCATGTCTGCTTCTGCCTCGTCGGCCGGCGGCCAGGCGACAGGTT CTGGGGGGACGGGAGCTGCCGCTGCCGCGGCCGCTGGCGGAAGTACCAGT AGTAGCGGTGGATCGGTTGCTGTCGATGGTGTCACTAGTGCTGCATCATC TGCTGCGGGGACTGCACAGCAGGTTAGCATGTTATGGCAGCTATCAGCGT TTGTGTGCATGGTACCTTCTACCGAACCGAAGAGCAAGAGACAGTACGAA AGACGTATAGGATAATAAGTTGAGATAGCACAGGACTCAGGGGGAAGTGG TACGCGCTAGAATGTTGGTAAAGGCTAGGTTGGGCGCGCAAAGAATGACG AAAACAAAGCCGGAGCCAGAGTTGAACTTTCTCAATGAAGAAAATATCTA GACTTGCAACGAGTGTTTGCTCACCAATTAGCACCAGGTTGTTTCGAAAC AAAAACGCGTGTCACAACATGCCAGGCTCTTCGGTCGTGGTTCGTACAAC AATGTCAAACAACTGTGTGTACCTTATGTGCTGGTTGTAGTGTACTTGCT TTATTTATGGACAGCGATGGCGCCTTTGACGGGTTGTCGTGCGATCAGGG ACGTTTTTCCCTATTTCGAGGAAAGGATCGGGTGGAAACAGATGCTGAAT GGATTGACCGTTCGCGTTCGAACTTGTCCACCTCGAACAGACGAGAAGGG CTTGGGCATTGGTCAAACAGGGGTACCCCCCCTATACTTTGTGCAGAAAA GGTTACCATAGTTCACAGTTGGGAGGAGCTATCTGGGTGATCTCCGTCGA AGATCGTGATATATTGAAGAATAAAAAAACTTTCTGCGGTTCAACCCCAA TCGATCAATCGAATGCAGCCACAAGCGTGTTTGAATTCAAACGCTGGCGC TGTGTTTTTTTGCGATCCTTATATAGAATGGCCAGTAGTCATCACGTGAT TGCGGCAAGAACATGACAATAGACGCTGCCGCGTGGCGTAGCTGTGATAC CCACGAACACCCATAGACAGACAATACACACAACAGTCAGTAGTACAACC AACAGGGCCACGATAAGATGGAAGGTTCTTCCCCGTCAGGACCTGAACCA TTCCTGGTCACTCCTCCTGAGCTGGCAAGGCTTTCAGGACTGGCTCTTGT TGCCCTGCATCTTTAGTCAACCGTTTAAATTCACTATTTTGGGTCCTTGC TTGCCCATCCTAGAAAGAGTCCAACTTTTGTACTACCACGACGCCTCGAG CGCCTCGTGTGTCGTGCGCAAAAACCCCAGCTACGAAAGCCTTAGATCAG ATTTTTGAGCGCGGTGGGAGAAATTTGAGCGCAGGGGCACTCCTAGTGTA AAATCGACTTTTCACGAAAATTTCTTGACGCCCTCAAAATTCTGATATAA GGCTTTCCTAGCTCTGTCGTGTAGAAATGTAGTGGTATTAGTATCAACGC TGGAATCGTTGCCAGTCGAAAGATAGACTGTTTACAAAGAAAGGCATACT TATACCGGAACAACTCATTCTAAGTGGGCCTCGGCGTGATGCCAGGAAGA AACGGTGATTTGAAGAATGTTTTTTTTCTTTTTAGAATGCGGAATAACAA AAATCAGCCTAGATCGCTTCTCCCAACAGTGTGTACCACTCCCCCGGGGA TAACATTTTCGGGGCCGACACCTCATCACCGGGAGTGATATTCAGGGGGG TGGTATACAGCATTACCCCGTTGATAGTGTACGTGACGGATTTCGGGCAT GGGAGGGGGTGATATTAGAGAGGATGGTAGCGTGTCAAGCTTGATTATTG TGTCCCCATGTGCACATCATTCCAAGCTGCAGGGGGTGACAGTAGAGGAG GGTGGGAATGAGGTATGGTCATCATGTTAACACTGCCGTATTCCTCTCGC GATGCTCGACAGCAGTGGTGGTGATGAGCCACGGGGCGTCAAAATGTGTC ATGCTGATCGTTACGTGCGAACTCCAAGCCACATGTCGCCTGTGGTGAAC ATTTCGTCGCAATTACAGTAGTAGCTATCAGGGCGTGTCTGCACAAACTC AAAAATGATAACGAAAAATAAACAGGGCGATGAATGGTTTGCAGGAGTGA AACGCAGCAAAGTCATTTTTCTCTTCCGAGAAGTTTCATGAAAATCATCG GTTTCTCAAAACGAAAAGTTCGTTTAAAATAGCGAAAAGGCGGCGCAAAA AATGGCAAAAAAACAATCAGTGCCCTTTTTATTACCACCTCATATCTGTT CATGGTTGTGACATGGGTGCGTTGTGCAACGAGTGCCTGCGCTTTCATCT CGCACAGCACCACCCAGAGACACCACGCTAAGTAGATGCCCAGCACCTCT ACGCATAACCACAGCCCACCAGGGCATGGAATGCTTTGACTTGGTGTCAT TGATTCAGTATTGGTAGAGCAGCAATGATTGCCTTGAAAATTTGAGCACA TTTTTTCTAGAAACCATGGAGGTTGTCACCATTTTTGCTGTCTGTTATTG TCACACACACGCATGAACGTAAGCTGCTGTACTTGCTGGTATTTGAGAGC GAAGGTCACACCAACTATTTCCAATTCAGCAGTACGCAGCGGCAGTCGGT CTCACTCCCCACCCCCGGTGCATCGTAGTGTGTACAGTCTACATATTTCT CTCCGAGTTTTCTATTTGCTAAATGGAGGTAAGAAACCAGGTCGTGGAGG TCCGACGCAGTCCTTCCGTAGGAAGATCCATCGTGTAATGGGTGTTACAG TAGCCGCCACTCTCACGAGAGATTGGTGTTGTGCATACTCGAAACCTCTT ATAAGTAGGAAGCTATCGTATCAGCAAACGTAACTTAAGAGAGTGCACGC GAATCGAATTCAATGAGCAAGCCAAGCACTAAGGACCCCGATTTCTTCGG CGAAAAACCTTGAAGCATTTCGCGTGCGACGGACACAACATACGCTCGCC ATTTCAACGCTGCCCCCAGCTTGCGCTCCTGGTGTAAATTGTGAAGGTCA GCCTATGATTCAATTAAGAAAAGCATGGTCACGTGACAGCAACAGCCGTC CGAGCGGTATCATGTCTATTGCGAGGAGTCATGAAATTGGGCGGCAGTTC TCTACCAACACAAGCTAGCTAATTTTCCATACCAGGCAAACGTCATACAT GAAAAACGCAACTGTCAATACTCTGCTTGTCCAGGAGATCACGAGTCTGA GAATTCCGGCACACCGCCATGAACATCATCATCCGCCTCCTACCAGTCAA TGGGGTCATATGGTCCGCTGCGTAACTTGTCACGGCAAGCAGTAGTCCCC AGACACGCAAATTGCACATTCTTCGGGTTTTTCTCGTGCTGTATTTTCAC TCCCGATCTCCAGGTAATAGACGTGGCACCTCACGGTTGCTTGCACTTCT TTGACGCCCCTGGGAGCCACAAACGTGGCGATCGCCTCTGTAACCGCAGG CTGAATGAAATACAGAGTAAGTCCACGTGTCTAATAAAGGCAGGGCAGGT CTGCTGATTTCGGTGTGCTGTTGTATGACGGATGGGGGGTGGTCTACACA ACGCGCACGTCTGCTACTCCTGTTGTTGCCGAGCTAGAGCTTGTGCCCCA TCTCCTCTGCTCACGGGCGGCTTTCTGATTTTGACTTATCCTCGTTGGCT CTTCTCCTTCTCTCCTTCTGGTGCCGTGAGGTCCACCGCTCTGTCGGCTC GGTTGGGCGTTGTAAGATGGTCTACACCCGGGTCGGTATCCCCACCGTGG TGTGGCCCTCCGCCACTGCCAGCTTCATCCGCCATGACGTTCGCCCTGGA CGCCGATCAGCTGACTTTGTGATTTTTAGTTGTGCGCTGGTCGGGCTAGC TGTTGTAGATGAAAAAACATTTATAATTACTTTGTAAATGAGCTTGTTGG CCCCGGCAATCAGTCGTCAGCAGGGTCAAGAGATGGGTTGTCCGGCTCGA TTTGGTACAAGTACTTCTGTTTCAAGTGCCCTGGCCAAAACTAGGGCAAA TCATTTGCCGGGAAACCAGTGCTCGGCGAGGAACTCGCGCAAGTTCTTTG TCATAAACAAGTGCCTTTGCCAGAACTAGGGCAAATAGTTTACCCGGAAA CAATTGCTCCATAAGAAAGTCCCGCAAGTATTTTCTCACTTGCCTGAACG ATTGTTTGCAAGTCAAGTCAAGCATTTGAGTACTCTCGTACCCGACTTAC ATTTGTCTGGGGTGTGAAAATTTTATTTCAGAGAAAAAAGGGTGAGCGAC AGGTCAAGAGGACGTCCAAATCCGTGGTAAAAACGTTCACCCGAAACAAG TCATTCATGAAAAAAAATGAACGATTTTCAAAGTTTTTGGAAAAAAAAAC TCGCGACCGGCTAAAGACACGCATTTCCAAGGTTTTTTCGAATTTTCAAA CGGACTCCCCTACCCAATATATCATGTCGGATATTTGGGACTTTAGGGGT TGGATGGACCATAATATGATACAGATATCACGTGTCTCTTGGACAAAAAG ATGAAAGTGACATATATTGTCCACACAAGTTTATCAATATTTTTTTCATC ACATTAGATTTGTACTTCGACGAAACCCGTCGATCAAAAGTTATCCGTCG GATCTTGTCATTATCCAAAACATGGGGGGGTGAATACAAAGTGACCCCGG TGATAAGTAGAAGAGCTTGAGGAAAGAGCAAAAATTACCATCAGGGGGTA GATACGGAGAGGGGGGATATGATATACACCGTGAGCTACGGTACAGCGGT CCACCCACGCCGAAATAGGTACCAAGATGCATGTGTGGTGGGTATCACCC CTGAACATTGGCACGTCATGTGCGCAGGCACCACTCACTCTCCAGTAAGC GAGCCTTGATGAATGACCGAAATAACCGCTGACAGGTAGTTCAACGTGTA GAAATACTACTGACTACCTCCCCGTCTTGCGACATGACTATGTAGGCCTT CTTGACACAAGGACAGCATAACCAGAGCGTACATCATGGGATTCATTCGC AGCATTTGTTTAGATGACTCTCAGTGCATTCAGTATCACAGAACCAGGGC ATCGCGATATGAGCTAGTTATTGCGTACGCGTGCATGTTTGCGTCCAATT GGTGGCATGATCGACTCCATCAATTCACCTCACTCTGTATGGGGTGTCGA CAAAAAATTGCCCACTGTCTGTATTGTGCTCTTACCTTCGTAACATATGC AGCTATATCAAGTCAGTCACGCATATAATGCTGTTGGTCGATTCTGCGGG TGTGCTCTCAGCGTTTACACTGGTGATGAAAGGCAGCCGATTCTGAAAAT CGATGATGGATGGGCTGTCCTGAAGCTCTACTGCTGTTTTGAGGTCATGT CAGGATTCCGCAAGGGTACGAGAAGACAACCTCTCGTAGCGCTCGCTTGC CGTGTCATTCTCTAGGGTGGGCGAAACGATAGGTATCCTACTATCTGTAG TTAACACGTTTCGGAAGCGGTTTAAATTTCAACTCTGCTTCCTTCTGTTG TACACGAGATGGGTTCTTGTGAATTTGCCACAGAAAACTGATGTCATACA TACGGCCCTTGTTGATGGAAAGGTTGAGGGTTTGTGATCACGATTGGTTC ACCGTTCTCCTTTTATGTTTCCTCTTTCCAATGGACCTTGAATGAGGGTG TAACTCCCTGTCGTTGTCAAAATATTAAGATTTTATTACTCGCCATGCTC GATCAAACAGCTCAATTCATCGTGAGAACAAGCATATTTATGAAATTGAA GCCTTCCTCGAGGCGTTTCTGGCGCGGCTTAATGCTCAAGCACTTGTCTC TGTTTGCGTGTGTTTTTTTCGTCGTCAGGCACAACCGATGATCGAAGCAT CTGTACCCTCGGCTGTGGAGCTAGGTTTGTATCCCGTCGAAATCGCCATG CAGGTGATCGATGGGATCGCAAGCACAACCGGCATGCCATACTGGGCGAG CATCGTTTTGATCACTGTGATGCTTCGTTCCGCGATGCTTCCCCTGGCGG TCGTGACCACGAGGAACTCGGCGAGAATGGGGCTCATGAAGCCTGAGCAG GACGCGCTTAAGGAGGCGCTGGAGGTATATTTTCATGCTGCGTAATGCGT TCACGCATTCAGTGCCTGACTGTAATTTTGTGTTTCAGCTCGATTCGATT CTATGTTTTGCTTTCGTTGGGTTGGGGTGTCGTCCCGATGCAACTTAGTG GAGTATCGTGGTTTGTACGTACGTACCATGGTAGCAACAAAAGATGAGGA TACAATAGCCCGTTACAGTCTCGAACGTTCTCCTGCCTCCTTAAAAGCTA TATCTCCAGGCCCTGGGTTAATTTTCGATGCTATGTATAATGATAGAACA CATGTTGCATGAGCTTGGGTTCCGATGAAGAAATAAGCGTTAGTTTGGGC TTTGTGTGAATAATCGTAGCAGGAATATGCTGTTTCGTTCGAATTTTTTC CTGCAGTTGTGTGGTGGTGTTATTGTCTGTGAGAAGACCGCTCCTTTGTA TGTTGTTTTTGGATTGTCTCGTCTTGATGACTTCGCCCCCCCTTCCCCGA ATCTCCTTCGGGTTTCGCAAACGTGTGTGCCTTCCTTTCCTCCTCGCCCC TCTACGGTATGCATGCGCCTCCACCAAATTGCGCGGGGTGACGTTCGGGA ACAACGCTACATGTCAAGTACAGCGCGACAACGTAACCCCCAGCAACAGG AAACACCTACGTTACCGAGCGGAGAGCAAGGCCTTGTTTCAGAAGTACGA CGTGAAGCTCTCCAGGGGCTTGTGGTTCCCGTTAGTACAGATACCGTTCT TTATGTCTTTCTGGTTTGCACTCCGCAGAATGAGCGAGCAGTTTCCTGCT TACGCGTCGGGCGGGGCTGCGTGGTTTCAGGTGCGTGCGTGCCGTTGGAT AGTGAGACTAATGCACAGAGAGTTTAGCTTTTAAGTGAATACAGTGCATA TGTTTTTTGCTACGTGATTATACTCTACCCTTCATTACTTGCAGAAAAGT CACAAATACTGTCTCCAGGCAATCTCTATATCGTACCGCATGAAGTATCT GTCCACAACACATTCATTACGATTGCTCTCCTCCCGACCCCCAGCAGGGA GCATGAGTACTTCAGTTTGCGCACCCAGTGTGCCATCGCACCCCCTTGCT GCAGATGTGTTTTATTCGCTTTTGCACTCACACACACACACCTTTGATTG GCAATTTGCTTGGCCATCGGAAATCGCTCTGATAGAAAGCCCCGTCCTCC CGGGGACGCGTGGTCAATGGTCAACAACAGCGGTATGCTAAACACGTGTA TCCCTCCCCTCCCCCCCCTTGATTTTTCGCACTGTCCTCCATTCAATACC TTCGTACCCTTCACTATCAAACTGTGCGATCTGTCGCGAACGAGTTTAAT TTTGCTTCTTACCCGATACAATATTAACTATCGGGTATATCATTTCGAAA CGCCATCACATCTATGCAAAAAAAAAAACACTGGATAATAACGAAATGCA GGCTCCTATGGACATGGAAACCTGTAACTATCTCTGAGAAAAGCTGCAGC TGCTGTTGACCACTGCATCGAGCGTTGAACTGGACATCCAGCGAGAGTGA CATGTCAGCTTGGGATACGTTTGAAAGAGCTGCGAACTGCTATGCTTTGT TCGAGAATGCGTGACATGTTTTGCACTGTGGAAGGATATAGCGAACATCA AAATTGATGCTGGTACAGAGCCAGCACATATCTTCCCCCATATGTAACCC CTTAGTAAAGTTGGGTAGCTTCTGCAGGGGTTTCCTGTAGGCCCCCAAAG CCTGCACGCCATCTTACCAAGTGTAAATATGTATGGATGATGACCTCCGC CCCCTAATTACTACGCGAAAAATGCGTAGTAAAAGGCTTATTTATTTATT TTTGTTGATTTCCTCACACTAGATCGGTATTGTTTCAAGTCCCTGCGATT AAAACTGTTTGTATTCCATATTTTTTGCCCAGATGTAGGGTGCTCTAGTC CCGAAAGGGTTGAAGGATACGACGGTACTTCTTTCTGTGCCGGCTTGGGC GTGCTACTCTATTTTGTTTTTGTTCTCTTCCACGGTATGGCAAGCCCCAA ATCGCCAGGACATCCAGAAAAAAGAATGATATTCGCTTCCAGTTTCCTGA AAAAGACCGCTGAATGGACCTTGAATAAGCAGAACCCCCCTCTTCCCCCC CCCCCGATCACCTACTCTCTCACAGGATCTCGGCGCCGCGGACCCCTACG CGGTCTTGCCTACTTTGTCTGCGTTATCGTTCCTTTTAATGCTGGAAAAG GGATCGGACGGCATGAACTCCGGAATGATGTCTCCAAACATCCGACTTGC GATGCGCGGGGTAACCTTGTTGATCGTGCCGATCACAATCAACCTGCCGG CGGGAACTTTCATGTACTGGCTGACGTCCAATACCTTTTCTCTCGTGCAG TCGGTCGTGCTCAAGGTACGTTCAGGTTTCCGCGTGGAGTGTTGTTTTGG TTGCCTTGATGATATCGCGAGCGATGTGTGCATTTGTTCGATCCTGGTCT TTCGACGTCATCAAAGCTAGCAAAACAAGAGGTTCACAACCTAGCTCAAA ATTCAAACGGATGGCTTGTGCCCTTTGCGTGTGTATAGTTCTTTGTGAAT TGCTGAGCACGACCGTTTCGCCGTCCTCTCGTGGCTACCAGAATGTCTCA CACACTAATACGACGGTCCTCGTCTCCCACGGCATGTGTCATGCTCTACC AAGAGACACGTTATCGACACAAACGGTGCATGATGAAAAGTGTTGAAACA GGCGATGATGAAAACAAAGTATGAGTACATACACGTTTTCCCCCCAAAAT TGAACGGTATCAATCCGTTGTTATAAGTCGCGTTTCTGCTCCTTGCTTCT CGCTTCCTCTCTCCCTCCTTCCCTCCGCTCCTGCTACCTTGTTCTTACTG TGTCTTGTCCGAAACATTATTTTCGTTTGTTGGGCGGGTGGGGGGAGGAC AGATGCCAACATTCAGGAAATCGTTCGGCATTCCCGTGGTACCCAAAGAG CCGCCACCGGGGGCTGACGGGAAAGAGTTAACGTGGATGGCCGTCCTGGG GGCGCCGAACCCATTCAAGGCGCACAAGATGATGTTGGATCAACAGGCGG CAAATTCACACAGCATTGTAGGGGGCGGTGATTTGGGTCCGGTGCCCAAG AACGCTCCCCTTCCCCCCCCCCCTCCTGTGACACGCGACATGGAGGCGGT GAGTGATGTGTAGGAAATAATGCTTGCGAAATCAAATTGCAGGTGGTTTT TGTCTTGTGACATCGGATGGAGGGAAAAATTCATGATCGTGTTGTTGCAT AATGGCCAAGAGCGCCATGGATGGATACAGTACGAGTGGTTGACTCATCT GCCACTGTTCAACACTCGTGCCCATGATTAAAATCAAATTTAATCCCACC ACAACAGCTAACCTCGGACTGTTGAAAAATTGCAAGTTTACTCGGTTTTG TTGTGATGAGTCTATCCTTCGGGAGCAGGTCATGGGAGAAGAGCCAGCGA GGCGGAGATGCTTTTTTTTACATTTTTTTTCCTGTCCGTATCCTTGTATC GCTGACCCCTGTGTGCAGCCCAAGCTGAAGACCGCAGCGGCGAGTGGATC AATGGGCAAAGGAGGGGTGGTGGGGCAGAGTTCGAAACCAAGGAAGGGAG GGGGCAATGACTTCAAAAGAAAGAAGGGGAAGCAACGAGCGTAGCAGGGT AGATATATTTTCCGCTCCTGTTGTTACAATTGTGACAAGAGTGGGGTTGC TGTTTTCCACTGTTTTAGCTGTAGGACCCGGTCGTACCTCTTTCTGCCTT CTGTGGATGTATAGTCACGGTGGGTGCTATTTTTCCCTTTCCTGTAGTAC TATTTTTGCGTATTTTTTTTCAACTGGTAACTTGTTCACTGTTATGACCG ATAACATCGTTCACAACTCTTACCGCTCATTTTGCACCGATATTTCGTTA TACCGATACACCGTATCGATCCATACATGGTTTTCATGTCTATTCCGTAC GAGCATGCGAACACTGATATTGGTTGACGTGAATCCATGAAAAAAATCAT CTCAAAATTGACAGTAGGATTGGTCTCTTCAATGGTGGATAGAACACATC AAATATCTCACAGCTTGTACTAATCATTTTACAACCATACGAGGCGCTAA TGGTACACAGTTTCGATCCGCACATGAATTTCACCTGTGAACGGTACTTT GCAGCCAGGTATCACACATTTTTCCTTAGCTTGTCCACACCAGACGACCC GTACTGTTATGTATGATATTATTTTAAGTTGTCGCTTCCTGAGATACTCA CCCTTCAGACAAAATTTATCGTCTATTTCACGACCTCAATTCTCTCCTTT CTTTCGCTCAAAATTGCTTACGTGGCGTCTTTTTTTTGTAAATTCTTCAT ATATGTGACTACCGTGCAGATTCTGCAACGACGATACAACGGACGCAAAT TCACGGTAATCATATCCTGAATGTTGGAACCATGTACTGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2220:9260..20201-

>mRNA_H-paniculata_contig2220.5895.1 ID=mRNA_H-paniculata_contig2220.5895.1|Name=mRNA_H-paniculata_contig2220.5895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3228bp|location=Sequence derived from alignment at H-paniculata_contig2220:9260..20201- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTCGAGCTGGGCAATCCTCAGCCGCACGCGCCGTATTCTACCGAGC
AGGGGCAGCGCATGAGGGGAGAAGTGCAAGGTTTTCAGTATTTGCTCGCG
CTTCTTCTGCTACTCGTCATTCTGTCCCCAACAATTTCAACAATGCATCA
TGCGGTAGCAGTGGCTCGCGGCCGGGTAGAGTTGGCGACCTTTCAGTGAG
CAACAGTAGGCTTGGAGGACGGAGAGTCGCCGTGATTGCGCAGCGAATAA
GGGCGGTAGCAACAACAGCGGGAGGGAGGTTAGCAGGAGGGGGTGCTTAC
CCACTGTCCTGTACACCATTAAATTCGTCCTTGCCATGTGCTGGCTTTGC
GTATTGGAGATGTGCAGCCTTTCGATCTCGAGGCATGTCTGCTTCTGCCT
CGTCGGCCGGCGGCCAGGCGACAGGTTCTGGGGGGACGGGAGCTGCCGCT
GCCGCGGCCGCTGGCGGAAGTACCAGTAGTAGCGGTGGATCGGTTGCTGT
CGATGGTGTCACTAGTGCTGCATCATCTGCTGCGGGGACTGCACAGCAGA
TGCTTCGAGCTGGGCAATCCTCAGCCGCACGCGCCGTATTCTACCGAGCA
GGGGCAGCGCATGAGGGGAGAAGTGCAAGGTTTTCAGTATTTGCTCGCGC
TTCTTCTGCTACTCGTCATTCTGTCCCCAACAATTTCAACAATGCATCAT
GCGGTAGCAGTGGCTCGCGGCCGGGTAGAGTTGGCGACCTTTCAGTGAGC
AACAGTAGGCTTGGAGGACGGAGAGTCGCCGTGATTGCGCAGCGAATAAG
GGCGGTAGCAACAACAGCGGGAGGGAGGTTAGCAGGAGGGGGTGCTTACC
CACTGTCCTGTACACCATTAAATTCGTCCTTGCCATGTGCTGGCTTTGCG
TATTGGAGATGTGCAGCCTTTCGATCTCGAGGCATGTCTGCTTCTGCCTC
GTCGGCCGGCGGCCAGGCGACAGGTTCTGGGGGGACGGGAGCTGCCGCTG
CCGCGGCCGCTGGCGGAAGTACCAGTAGTAGCGGTGGATCGGTTGCTGTC
GATGGTGTCACTAGTGCTGCATCATCTGCTGCGGGGACTGCACAGCAGGC
ACAACCGATGATCGAAGCATCTGTACCCTCGGCTGTGGAGCTAGGTTTGT
ATCCCGTCGAAATCGCCATGCAGGTGATCGATGGGATCGCAAGCACAACC
GGCATGCCATACTGGGCGAGCATCGTTTTGATCACTGTGATGCTTCGTTC
CGCGATGCTTCCCCTGGCGGTCGTGACCACGAGGAACTCGGCGAGAATGG
GGCTCATGAAGCCTGAGCAGGACGCGCTTAAGGAGGCGCTGGAGGCACAA
CCGATGATCGAAGCATCTGTACCCTCGGCTGTGGAGCTAGGTTTGTATCC
CGTCGAAATCGCCATGCAGGTGATCGATGGGATCGCAAGCACAACCGGCA
TGCCATACTGGGCGAGCATCGTTTTGATCACTGTGATGCTTCGTTCCGCG
ATGCTTCCCCTGGCGGTCGTGACCACGAGGAACTCGGCGAGAATGGGGCT
CATGAAGCCTGAGCAGGACGCGCTTAAGGAGGCGCTGGAGCGCGACAACG
TAACCCCCAGCAACAGGAAACACCTACGTTACCGAGCGGAGAGCAAGGCC
TTGTTTCAGAAGTACGACGTGAAGCTCTCCAGGGGCTTGTGGTTCCCGTT
AGTACAGATACCGTTCTTTATGTCTTTCTGGTTTGCACTCCGCAGAATGA
GCGAGCAGTTTCCTGCTTACGCGTCGGGCGGGGCTGCGTGGTTTCAGCGC
GACAACGTAACCCCCAGCAACAGGAAACACCTACGTTACCGAGCGGAGAG
CAAGGCCTTGTTTCAGAAGTACGACGTGAAGCTCTCCAGGGGCTTGTGGT
TCCCGTTAGTACAGATACCGTTCTTTATGTCTTTCTGGTTTGCACTCCGC
AGAATGAGCGAGCAGTTTCCTGCTTACGCGTCGGGCGGGGCTGCGTGGTT
TCAGGATCTCGGCGCCGCGGACCCCTACGCGGTCTTGCCTACTTTGTCTG
CGTTATCGTTCCTTTTAATGCTGGAAAAGGGATCGGACGGCATGAACTCC
GGAATGATGTCTCCAAACATCCGACTTGCGATGCGCGGGGTAACCTTGTT
GATCGTGCCGATCACAATCAACCTGCCGGCGGGAACTTTCATGTACTGGC
TGACGTCCAATACCTTTTCTCTCGTGCAGTCGGTCGTGCTCAAGGATCTC
GGCGCCGCGGACCCCTACGCGGTCTTGCCTACTTTGTCTGCGTTATCGTT
CCTTTTAATGCTGGAAAAGGGATCGGACGGCATGAACTCCGGAATGATGT
CTCCAAACATCCGACTTGCGATGCGCGGGGTAACCTTGTTGATCGTGCCG
ATCACAATCAACCTGCCGGCGGGAACTTTCATGTACTGGCTGACGTCCAA
TACCTTTTCTCTCGTGCAGTCGGTCGTGCTCAAGATGCCAACATTCAGGA
AATCGTTCGGCATTCCCGTGGTACCCAAAGAGCCGCCACCGGGGGCTGAC
GGGAAAGAGTTAACGTGGATGGCCGTCCTGGGGGCGCCGAACCCATTCAA
GGCGCACAAGATGATGTTGGATCAACAGGCGGCAAATTCACACAGCATTG
TAGGGGGCGGTGATTTGGGTCCGGTGCCCAAGAACGCTCCCCTTCCCCCC
CCCCCTCCTGTGACACGCGACATGGAGGCGATGCCAACATTCAGGAAATC
GTTCGGCATTCCCGTGGTACCCAAAGAGCCGCCACCGGGGGCTGACGGGA
AAGAGTTAACGTGGATGGCCGTCCTGGGGGCGCCGAACCCATTCAAGGCG
CACAAGATGATGTTGGATCAACAGGCGGCAAATTCACACAGCATTGTAGG
GGGCGGTGATTTGGGTCCGGTGCCCAAGAACGCTCCCCTTCCCCCCCCCC
CTCCTGTGACACGCGACATGGAGGCGCCCAAGCTGAAGACCGCAGCGGCG
AGTGGATCAATGGGCAAAGGAGGGGTGGTGGGGCAGAGTTCGAAACCAAG
GAAGGGAGGGGGCAATGACTTCAAAAGAAAGAAGGGGAAGCAACGAGCGT
AGCCCAAGCTGAAGACCGCAGCGGCGAGTGGATCAATGGGCAAAGGAGGG
GTGGTGGGGCAGAGTTCGAAACCAAGGAAGGGAGGGGGCAATGACTTCAA
AAGAAAGAAGGGGAAGCAACGAGCGTAG
back to top